Wall clock time and date at job start Wed Apr 1 2020 01:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48538 * 110.99924 * 2 1 4 4 C 1.54940 * 103.22456 * 159.71586 * 3 2 1 5 5 C 1.54592 * 102.92392 * 322.58870 * 4 3 2 6 6 C 1.47900 * 111.00094 * 117.39450 * 2 1 3 7 7 H 1.09005 * 110.08051 * 333.60630 * 6 2 1 8 8 C 1.50699 * 109.91769 * 94.80463 * 6 2 1 9 9 O 1.21284 * 119.99580 * 17.58908 * 8 6 2 10 10 N 1.34780 * 120.00291 * 197.59305 * 8 6 2 11 11 C 1.47579 * 134.49304 * 180.02562 * 10 8 6 12 12 C 1.53941 * 86.11493 * 155.35934 * 11 10 8 13 13 C 1.53000 * 113.74266 * 137.95721 * 12 11 10 14 14 N 1.46501 * 109.47422 * 176.92213 * 13 12 11 15 15 C 1.34770 * 120.00184 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99926 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00162 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99922 * 359.72196 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72275 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72122 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72158 * 23 21 19 27 27 C 1.47811 * 134.45325 * 359.86824 * 10 8 6 28 28 H 1.08999 * 109.47456 * 302.60400 * 1 2 3 29 29 H 1.09004 * 109.46855 * 62.60382 * 1 2 3 30 30 H 1.09002 * 109.46783 * 182.59916 * 1 2 3 31 31 H 1.09005 * 110.66557 * 41.28523 * 3 2 1 32 32 H 1.08995 * 110.67049 * 278.15305 * 3 2 1 33 33 H 1.09000 * 110.71920 * 204.22761 * 4 3 2 34 34 H 1.08997 * 110.87222 * 81.01998 * 4 3 2 35 35 H 1.08999 * 110.30542 * 263.03974 * 5 4 3 36 36 H 1.08999 * 110.30811 * 140.87623 * 5 4 3 37 37 H 1.08995 * 113.77141 * 41.04972 * 11 10 8 38 38 H 1.09005 * 113.86532 * 269.67357 * 11 10 8 39 39 H 1.09001 * 113.73973 * 269.15023 * 12 11 10 40 40 H 1.08998 * 109.47408 * 56.91977 * 13 12 11 41 41 H 1.09009 * 109.46801 * 296.91720 * 13 12 11 42 42 H 0.97002 * 119.99442 * 359.97438 * 14 13 12 43 43 H 1.09002 * 109.47425 * 60.00091 * 17 15 14 44 44 H 1.08997 * 109.47387 * 299.99843 * 17 15 14 45 45 H 0.97000 * 120.00258 * 0.27534 * 22 21 19 46 46 H 1.08998 * 113.77081 * 90.38166 * 27 10 8 47 47 H 1.09000 * 113.83684 * 318.91093 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5229 5 6 3.2982 0.1054 1.5931 6 6 1.9990 -0.6353 1.2259 7 1 1.2770 -0.5432 2.0373 8 6 2.2938 -2.0898 0.9641 9 8 2.3970 -2.4920 -0.1755 10 7 2.4427 -2.9437 1.9962 11 6 2.7281 -4.3871 2.1115 12 6 3.2867 -4.0584 3.5078 13 6 2.8879 -5.0696 4.5845 14 7 3.5263 -4.7096 5.8530 15 6 3.3170 -5.4633 6.9505 16 8 2.6005 -6.4398 6.8880 17 6 3.9741 -5.0933 8.2552 18 16 3.5010 -6.2885 9.5294 19 6 4.3834 -5.6331 10.9066 20 1 4.9843 -4.7435 10.7890 21 6 4.3061 -6.2601 12.1424 22 7 3.5693 -7.3413 12.2870 23 14 5.2410 -5.5649 13.6026 24 1 6.5930 -6.1765 13.6614 25 1 5.3695 -4.0931 13.4528 26 1 4.5037 -5.8725 14.8544 27 6 2.3884 -2.8091 3.4671 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4729 -0.9125 30 1 -0.3633 -1.0266 0.0466 31 1 1.4237 2.0205 0.6729 32 1 2.0041 1.7978 -1.0095 33 1 3.8121 2.1352 0.9717 34 1 4.1140 0.8848 -0.2770 35 1 3.2135 0.5486 2.5853 36 1 4.1469 -0.5774 1.5542 37 1 3.4817 -4.7434 1.4093 38 1 1.8357 -5.0128 2.1314 39 1 4.3530 -3.8320 3.5117 40 1 3.2117 -6.0663 4.2848 41 1 1.8048 -5.0610 4.7076 42 1 4.0996 -3.9287 5.9030 43 1 3.6511 -4.0963 8.5549 44 1 5.0571 -5.1025 8.1321 45 1 3.0835 -7.7021 11.5289 46 1 1.3951 -2.9685 3.8865 47 1 2.8716 -1.9082 3.8452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745949959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:28 Heat of formation + Delta-G solvation = -31.437199 kcal Electronic energy + Delta-G solvation = -26541.457926 eV Core-core repulsion = 22658.626313 eV Total energy + Delta-G solvation = -3882.831612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01686 -39.70126 -38.96778 -37.51829 -34.61315 -32.75748 -32.56295 -31.42708 -30.10640 -28.84828 -26.69949 -26.24577 -25.75207 -24.80518 -22.39986 -21.71017 -21.08827 -20.37964 -19.25186 -18.38925 -17.67839 -16.92030 -16.68182 -16.48702 -16.34704 -15.56537 -15.31687 -14.91531 -14.67787 -14.46746 -14.26501 -14.17335 -13.87880 -13.59465 -13.48107 -13.25572 -13.10624 -12.98620 -12.54982 -12.42797 -12.41480 -12.04686 -12.02308 -11.89045 -11.85477 -11.70934 -11.57814 -11.30183 -11.26167 -10.93901 -10.22057 -10.03120 -9.63526 -9.57917 -9.10360 -9.08425 -9.02007 -8.92116 -8.26308 -6.71201 -6.65576 -4.03937 2.20340 2.38086 2.83613 2.92326 3.31309 3.36326 3.41283 3.46883 3.53745 3.90824 3.91353 4.04803 4.21473 4.26079 4.38259 4.38404 4.58721 4.65868 4.73950 4.86493 4.88596 4.92335 4.95597 4.99680 5.00854 5.09287 5.18750 5.19222 5.22211 5.31685 5.34831 5.38724 5.42719 5.46361 5.50983 5.57406 5.63002 5.71597 5.79149 5.95967 6.25720 6.42466 6.43919 7.28982 7.52256 7.88657 7.89703 8.43324 8.46709 9.23453 10.78365 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.001703 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.603628 B =16441.348794 C =17232.794052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.501 5.501 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.119 4.119 6 C 0.053 3.947 7 H 0.073 0.927 8 C 0.544 3.456 9 O -0.515 6.515 10 N -0.651 5.651 11 C 0.120 3.880 12 C -0.134 4.134 13 C 0.130 3.870 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.517 6.517 17 C -0.131 4.131 18 S -0.116 6.116 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.280 1.280 27 C 0.104 3.896 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.091 0.909 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 18.714 -23.686 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.225 5.225 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.157 4.157 6 C -0.059 4.059 7 H 0.091 0.909 8 C 0.332 3.668 9 O -0.388 6.388 10 N -0.388 5.388 11 C -0.003 4.003 12 C -0.153 4.153 13 C 0.006 3.994 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.391 6.391 17 C -0.282 4.282 18 S 0.110 5.890 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.019 4.019 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.366 16.474 -23.494 28.792 hybrid contribution 0.483 2.302 -0.701 2.454 sum -1.883 18.776 -24.195 30.684 Atomic orbital electron populations 1.22547 0.87069 1.02322 1.01216 1.64322 1.08410 1.14707 1.35021 1.23286 0.95005 0.89116 1.01736 1.22493 0.96812 0.98319 0.98447 1.22335 0.95947 0.97753 0.99678 1.22284 0.98345 0.92264 0.92982 0.90870 1.20094 0.76269 0.86817 0.83637 1.90712 1.49036 1.78194 1.20900 1.50070 1.72303 1.09936 1.06540 1.23085 1.00241 0.82430 0.94569 1.23415 1.01247 0.95721 0.94915 1.21228 0.98237 0.97851 0.82125 1.45938 1.52386 1.31612 1.09299 1.20289 0.80863 0.82548 0.84644 1.90716 1.36996 1.26516 1.84860 1.23314 1.03463 1.05432 0.96028 1.84843 1.65664 1.35932 1.02580 1.23725 1.37035 1.17868 0.96976 0.91561 1.26059 0.96885 0.94705 0.99901 1.70772 1.26281 1.19902 1.34846 0.83287 0.75683 0.75060 0.74659 1.21044 1.21304 1.20501 1.23438 1.00205 0.98842 0.79445 0.95174 0.90617 0.91330 0.93339 0.89378 0.90396 0.90278 0.90266 0.90470 0.89553 0.89202 0.87146 0.90745 0.90985 0.76705 0.88944 0.88926 0.90947 0.89100 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.69 16 2 N -0.50 -4.41 4.75 -232.16 -1.10 -5.51 16 3 C 0.04 0.22 6.56 -1.89 -0.01 0.21 16 4 C -0.12 -0.70 7.06 -24.87 -0.18 -0.88 16 5 C -0.12 -0.73 6.56 -25.38 -0.17 -0.90 16 6 C 0.05 0.43 2.62 -67.80 -0.18 0.25 16 7 H 0.07 0.50 7.74 -51.93 -0.40 0.10 16 8 C 0.54 5.84 7.10 -10.98 -0.08 5.76 16 9 O -0.51 -7.76 17.28 5.55 0.10 -7.67 16 10 N -0.65 -5.41 3.61 -178.19 -0.64 -6.06 16 11 C 0.12 0.87 8.41 -2.97 -0.02 0.85 16 12 C -0.13 -0.81 3.93 -89.71 -0.35 -1.16 16 13 C 0.13 1.16 5.51 -4.04 -0.02 1.14 16 14 N -0.74 -8.06 5.56 -60.29 -0.33 -8.40 16 15 C 0.53 9.00 7.85 -10.99 -0.09 8.92 16 16 O -0.52 -10.99 15.86 5.56 0.09 -10.90 16 17 C -0.13 -2.49 6.16 36.00 0.22 -2.27 16 18 S -0.12 -3.05 19.60 -107.50 -2.11 -5.16 16 19 C -0.61 -17.15 9.50 30.94 0.29 -16.86 16 20 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 21 C 0.04 1.00 5.49 -17.43 -0.10 0.91 16 22 N -0.88 -27.14 13.67 55.49 0.76 -26.38 16 23 Si 1.09 24.52 29.92 -169.99 -5.09 19.44 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.10 0.59 8.18 -2.85 -0.02 0.57 16 28 H 0.03 0.18 8.01 -51.93 -0.42 -0.24 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.25 7.96 -51.93 -0.41 -0.16 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.69 7.88 -51.92 -0.41 0.28 16 42 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.28 8.72 7.13 -40.82 -0.29 8.43 16 46 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -38.22 402.28 -10.19 -48.41 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.79 Total: -1.07 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.14 Total: -2.77 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.32 Total: -46.34 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.09 Total: 19.44 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.22 -10.19 -48.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745949959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.972 kcal (2) G-P(sol) polarization free energy of solvation -38.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds