Wall clock time and date at job start Wed Apr 1 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48538 * 110.99924 * 2 1 4 4 C 1.54940 * 103.22456 * 159.71586 * 3 2 1 5 5 C 1.54592 * 102.92392 * 322.58870 * 4 3 2 6 6 C 1.47900 * 111.00094 * 117.39450 * 2 1 3 7 7 H 1.09005 * 110.08051 * 333.60630 * 6 2 1 8 8 C 1.50699 * 109.91769 * 94.80463 * 6 2 1 9 9 O 1.21284 * 119.99580 * 17.58908 * 8 6 2 10 10 N 1.34780 * 120.00291 * 197.59305 * 8 6 2 11 11 C 1.47579 * 134.49304 * 180.02562 * 10 8 6 12 12 C 1.53941 * 86.11493 * 155.35934 * 11 10 8 13 13 C 1.53000 * 113.74266 * 137.95721 * 12 11 10 14 14 N 1.46501 * 109.47422 * 176.92213 * 13 12 11 15 15 C 1.34770 * 120.00184 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99926 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00162 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99922 * 359.72196 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72275 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72122 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72158 * 23 21 19 27 27 C 1.47811 * 134.45325 * 359.86824 * 10 8 6 28 28 H 1.08999 * 109.47456 * 302.60400 * 1 2 3 29 29 H 1.09004 * 109.46855 * 62.60382 * 1 2 3 30 30 H 1.09002 * 109.46783 * 182.59916 * 1 2 3 31 31 H 1.09005 * 110.66557 * 41.28523 * 3 2 1 32 32 H 1.08995 * 110.67049 * 278.15305 * 3 2 1 33 33 H 1.09000 * 110.71920 * 204.22761 * 4 3 2 34 34 H 1.08997 * 110.87222 * 81.01998 * 4 3 2 35 35 H 1.08999 * 110.30542 * 263.03974 * 5 4 3 36 36 H 1.08999 * 110.30811 * 140.87623 * 5 4 3 37 37 H 1.08995 * 113.77141 * 41.04972 * 11 10 8 38 38 H 1.09005 * 113.86532 * 269.67357 * 11 10 8 39 39 H 1.09001 * 113.73973 * 269.15023 * 12 11 10 40 40 H 1.08998 * 109.47408 * 56.91977 * 13 12 11 41 41 H 1.09009 * 109.46801 * 296.91720 * 13 12 11 42 42 H 0.97002 * 119.99442 * 359.97438 * 14 13 12 43 43 H 1.09002 * 109.47425 * 60.00091 * 17 15 14 44 44 H 1.08997 * 109.47387 * 299.99843 * 17 15 14 45 45 H 0.97000 * 120.00258 * 0.27534 * 22 21 19 46 46 H 1.08998 * 113.77081 * 90.38166 * 27 10 8 47 47 H 1.09000 * 113.83684 * 318.91093 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5229 5 6 3.2982 0.1054 1.5931 6 6 1.9990 -0.6353 1.2259 7 1 1.2770 -0.5432 2.0373 8 6 2.2938 -2.0898 0.9641 9 8 2.3970 -2.4920 -0.1755 10 7 2.4427 -2.9437 1.9962 11 6 2.7281 -4.3871 2.1115 12 6 3.2867 -4.0584 3.5078 13 6 2.8879 -5.0696 4.5845 14 7 3.5263 -4.7096 5.8530 15 6 3.3170 -5.4633 6.9505 16 8 2.6005 -6.4398 6.8880 17 6 3.9741 -5.0933 8.2552 18 16 3.5010 -6.2885 9.5294 19 6 4.3834 -5.6331 10.9066 20 1 4.9843 -4.7435 10.7890 21 6 4.3061 -6.2601 12.1424 22 7 3.5693 -7.3413 12.2870 23 14 5.2410 -5.5649 13.6026 24 1 6.5930 -6.1765 13.6614 25 1 5.3695 -4.0931 13.4528 26 1 4.5037 -5.8725 14.8544 27 6 2.3884 -2.8091 3.4671 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4729 -0.9125 30 1 -0.3633 -1.0266 0.0466 31 1 1.4237 2.0205 0.6729 32 1 2.0041 1.7978 -1.0095 33 1 3.8121 2.1352 0.9717 34 1 4.1140 0.8848 -0.2770 35 1 3.2135 0.5486 2.5853 36 1 4.1469 -0.5774 1.5542 37 1 3.4817 -4.7434 1.4093 38 1 1.8357 -5.0128 2.1314 39 1 4.3530 -3.8320 3.5117 40 1 3.2117 -6.0663 4.2848 41 1 1.8048 -5.0610 4.7076 42 1 4.0996 -3.9287 5.9030 43 1 3.6511 -4.0963 8.5549 44 1 5.0571 -5.1025 8.1321 45 1 3.0835 -7.7021 11.5289 46 1 1.3951 -2.9685 3.8865 47 1 2.8716 -1.9082 3.8452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745949959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:27 Heat of formation + Delta-G solvation = -60.711317 kcal Electronic energy + Delta-G solvation = -26542.727347 eV Core-core repulsion = 22658.626313 eV Total energy + Delta-G solvation = -3884.101033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68921 -40.67511 -39.85517 -38.31316 -35.72199 -34.72068 -33.26754 -32.32689 -31.11100 -29.73204 -27.23770 -27.18501 -26.76839 -26.39213 -23.02943 -22.16483 -21.95989 -21.42979 -20.36566 -19.86880 -18.40206 -17.88306 -17.68137 -17.38302 -17.01328 -16.69343 -16.51251 -15.93258 -15.68191 -15.57503 -15.22440 -15.14070 -14.80610 -14.67882 -14.47360 -14.34007 -14.14598 -13.83271 -13.63548 -13.56255 -13.48043 -13.01867 -12.92421 -12.72693 -12.57882 -12.43476 -12.32822 -12.06457 -11.92527 -11.89135 -11.74714 -11.51940 -11.08362 -11.04533 -10.76814 -10.28593 -10.13016 -9.77819 -9.46406 -8.89710 -8.83430 -6.24627 1.24567 1.51065 1.54229 1.57376 1.63221 1.70836 1.81109 2.21219 2.37062 2.92127 3.04933 3.15126 3.28801 3.34929 3.55543 3.76523 3.79295 3.88187 3.94004 4.06151 4.16019 4.20697 4.23592 4.35331 4.40934 4.41088 4.44249 4.50700 4.53538 4.57133 4.64375 4.72165 4.79193 4.80209 4.83903 4.89110 4.95826 5.05825 5.18064 5.19419 5.41178 5.67644 5.75865 5.94127 6.17722 6.48447 6.62685 7.08936 7.14660 7.22145 8.53832 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.001703 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.603628 B =16441.348794 C =17232.794052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.115 4.115 6 C 0.055 3.945 7 H 0.089 0.911 8 C 0.537 3.463 9 O -0.572 6.572 10 N -0.651 5.651 11 C 0.110 3.890 12 C -0.112 4.112 13 C 0.132 3.868 14 N -0.706 5.706 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.110 4.110 18 S -0.200 6.200 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.915 5.915 23 Si 1.138 2.862 24 H -0.269 1.269 25 H -0.261 1.261 26 H -0.281 1.281 27 C 0.107 3.893 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.419 0.581 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.261 0.739 46 H 0.097 0.903 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 21.901 -23.193 31.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.153 4.153 6 C -0.057 4.057 7 H 0.107 0.893 8 C 0.326 3.674 9 O -0.450 6.450 10 N -0.387 5.387 11 C -0.013 4.013 12 C -0.131 4.131 13 C 0.008 3.992 14 N -0.361 5.361 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.261 4.261 18 S 0.026 5.974 19 C -0.759 4.759 20 H 0.095 0.905 21 C -0.224 4.224 22 N -0.550 5.550 23 Si 0.956 3.044 24 H -0.194 1.194 25 H -0.185 1.185 26 H -0.207 1.207 27 C -0.015 4.015 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.257 0.743 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.035 19.716 -23.023 30.329 hybrid contribution 0.062 1.329 -1.019 1.676 sum -0.973 21.045 -24.042 31.966 Atomic orbital electron populations 1.22511 0.86635 1.01516 1.02214 1.64267 1.09166 1.16333 1.35983 1.23338 0.95388 0.88093 1.02234 1.22509 0.96222 0.99194 0.98042 1.22376 0.94451 0.97440 1.01058 1.22334 0.99677 0.90552 0.93140 0.89345 1.20704 0.75313 0.88146 0.83189 1.90676 1.51846 1.79318 1.23167 1.50165 1.70992 1.10086 1.07500 1.23204 1.00496 0.82366 0.95233 1.23234 1.02221 0.94943 0.92689 1.21310 0.97924 0.98449 0.81534 1.45627 1.51356 1.30871 1.08228 1.19970 0.80368 0.82483 0.85291 1.90711 1.39406 1.28914 1.85565 1.23235 1.04738 1.03688 0.94466 1.85102 1.66612 1.39979 1.05681 1.24058 1.36525 1.17844 0.97482 0.90535 1.27807 0.96907 0.94202 1.03451 1.70892 1.28166 1.21727 1.34252 0.82689 0.74823 0.75924 0.70936 1.19430 1.18506 1.20660 1.23642 1.00725 0.99603 0.77524 0.93534 0.90172 0.93065 0.91713 0.89484 0.88116 0.91917 0.87615 0.91394 0.90096 0.88931 0.85433 0.91590 0.91302 0.74294 0.86726 0.86962 0.92825 0.88463 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.40 127.69 1.20 1.47 16 2 N -0.53 -8.92 4.75 -888.42 -4.22 -13.15 16 3 C 0.04 0.39 6.56 86.65 0.57 0.96 16 4 C -0.12 -1.14 7.06 31.80 0.22 -0.92 16 5 C -0.11 -1.11 6.56 31.47 0.21 -0.90 16 6 C 0.05 0.79 2.62 44.31 0.12 0.91 16 7 H 0.09 0.97 7.74 -2.38 -0.02 0.95 16 8 C 0.54 11.21 7.10 87.66 0.62 11.83 16 9 O -0.57 -17.79 17.28 -3.04 -0.05 -17.84 16 10 N -0.65 -9.78 3.61 -836.07 -3.02 -12.80 16 11 C 0.11 1.47 8.41 86.48 0.73 2.20 16 12 C -0.11 -1.02 3.93 -10.14 -0.04 -1.06 16 13 C 0.13 2.05 5.51 86.38 0.48 2.52 16 14 N -0.71 -13.23 5.56 -463.06 -2.57 -15.80 16 15 C 0.53 17.19 7.85 87.66 0.69 17.87 16 16 O -0.57 -24.14 15.86 -3.04 -0.05 -24.19 16 17 C -0.11 -3.94 6.16 71.23 0.44 -3.51 16 18 S -0.20 -10.62 19.60 -56.49 -1.11 -11.73 16 19 C -0.61 -34.18 9.50 67.95 0.65 -33.53 16 20 H 0.08 3.98 7.80 -2.91 -0.02 3.96 16 21 C -0.02 -1.17 5.49 84.86 0.47 -0.71 16 22 N -0.91 -57.28 13.67 21.65 0.30 -56.98 16 23 Si 1.14 48.12 29.92 68.60 2.05 50.17 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.11 0.85 8.18 86.43 0.71 1.56 16 28 H 0.05 0.46 8.01 -2.39 -0.02 0.44 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.48 7.96 -2.38 -0.02 0.46 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.19 8.10 -2.38 -0.02 1.18 16 39 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.19 7.88 -2.38 -0.02 1.17 16 42 H 0.42 4.66 8.47 -92.71 -0.79 3.88 16 43 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 45 H 0.26 16.98 7.13 -92.71 -0.66 16.32 16 46 H 0.10 0.73 7.92 -2.39 -0.02 0.72 16 47 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -87.56 402.28 -1.34 -88.91 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.29 Total: 14.72 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 7.05 Total: -1.30 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -9.52 Total: -98.74 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.10 Total: -42.03 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -1.11 Total: -11.73 kcal Total: -87.56 -1.34 -88.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745949959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.194 kcal (2) G-P(sol) polarization free energy of solvation -87.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds