Wall clock time and date at job start Wed Apr 1 2020 00:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 N 1.34773 * 120.00081 * 59.72378 * 4 2 1 6 6 O 1.21283 * 119.99503 * 239.99651 * 4 2 1 7 7 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 8 8 C 1.47384 * 111.00045 * 191.39770 * 7 2 1 9 9 C 1.54065 * 106.11025 * 219.21274 * 8 7 2 10 10 H 1.08999 * 110.29050 * 270.98558 * 9 8 7 11 11 C 1.52077 * 110.11848 * 149.55712 * 9 8 7 12 12 C 1.53315 * 109.16731 * 299.46989 * 11 9 8 13 13 C 1.53038 * 107.65529 * 291.56826 * 12 11 9 14 14 N 1.44336 * 110.06705 * 52.24314 * 13 12 11 15 15 C 1.34773 * 116.00170 * 152.77978 * 14 13 12 16 16 O 1.21285 * 119.99673 * 179.56177 * 15 14 13 17 17 C 1.50693 * 119.99921 * 359.56251 * 15 14 13 18 18 S 1.81005 * 109.47227 * 179.97438 * 17 15 14 19 19 C 1.76191 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00710 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99757 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46953 * 89.99856 * 23 21 19 25 25 H 1.48492 * 109.47126 * 209.99875 * 23 21 19 26 26 H 1.48498 * 109.47182 * 330.00408 * 23 21 19 27 27 C 1.44277 * 127.37696 * 332.28696 * 14 13 12 28 28 H 1.08998 * 109.31210 * 251.49147 * 27 14 13 29 29 C 1.47234 * 111.00319 * 69.87344 * 7 2 1 30 30 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 31 31 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 32 32 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99521 * 180.02562 * 5 4 2 35 35 H 1.08997 * 110.12462 * 338.37420 * 8 7 2 36 36 H 1.09005 * 110.12730 * 100.05752 * 8 7 2 37 37 H 1.09002 * 109.52314 * 59.37050 * 11 9 8 38 38 H 1.09003 * 109.52311 * 179.56130 * 11 9 8 39 39 H 1.08997 * 109.82572 * 51.10441 * 12 11 9 40 40 H 1.08996 * 109.82351 * 171.96885 * 12 11 9 41 41 H 1.08998 * 109.31188 * 172.32963 * 13 12 11 42 42 H 1.09002 * 109.31005 * 291.74287 * 13 12 11 43 43 H 1.08998 * 109.47507 * 299.99905 * 17 15 14 44 44 H 1.09001 * 109.47555 * 60.00354 * 17 15 14 45 45 H 0.96995 * 119.99765 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.84376 * 242.34904 * 29 7 2 47 47 H 1.09006 * 109.84595 * 3.26293 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 1.7021 -0.2529 -2.4546 6 8 2.7296 -1.6963 -1.1194 7 7 2.0197 -0.6926 1.1993 8 6 3.4675 -0.4813 1.3771 9 6 4.0388 -1.8258 1.8663 10 1 4.0025 -1.8785 2.9544 11 6 5.4733 -1.9895 1.3884 12 6 5.4987 -1.9682 -0.1444 13 6 4.8135 -3.2446 -0.6377 14 7 3.5160 -3.3805 -0.0202 15 6 2.5967 -4.0716 -0.7228 16 8 1.4844 -4.2366 -0.2683 17 6 2.9508 -4.6392 -2.0731 18 16 1.5172 -5.5064 -2.7579 19 6 2.1935 -6.0529 -4.2903 20 1 3.2161 -5.8163 -4.5444 21 6 1.4116 -6.7868 -5.1716 22 7 0.1647 -7.0740 -4.8627 23 14 2.1283 -7.3657 -6.7966 24 1 2.7438 -8.7052 -6.6170 25 1 1.0482 -7.4494 -7.8122 26 1 3.1629 -6.4028 -7.2523 27 6 3.0990 -2.8699 1.2632 28 1 2.9862 -3.6990 1.9617 29 6 1.7497 -2.1379 1.1212 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1408 0.5332 -2.5436 34 1 2.0251 -0.7103 -3.2467 35 1 3.9251 -0.2024 0.4279 36 1 3.6446 0.2946 2.1219 37 1 6.0813 -1.1712 1.7741 38 1 5.8703 -2.9395 1.7462 39 1 4.9603 -1.0943 -0.5110 40 1 6.5299 -1.9415 -0.4966 41 1 4.6943 -3.1945 -1.7200 42 1 5.4317 -4.1062 -0.3855 43 1 3.2402 -3.8296 -2.7431 44 1 3.7810 -5.3376 -1.9674 45 1 -0.3816 -7.5872 -5.4783 46 1 1.0814 -2.4336 1.9299 47 1 1.2959 -2.3782 0.1597 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754871144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:50 Heat of formation + Delta-G solvation = -50.775295 kcal Electronic energy + Delta-G solvation = -30583.488360 eV Core-core repulsion = 26699.818184 eV Total energy + Delta-G solvation = -3883.670175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53620 -40.44119 -38.94583 -37.09619 -34.81134 -34.60379 -34.37508 -33.21346 -31.21387 -29.86774 -28.65840 -27.64443 -26.03655 -25.10186 -23.76236 -23.00162 -21.11211 -20.74038 -19.69079 -19.43127 -18.37560 -18.04120 -17.64530 -17.28563 -16.90590 -16.87986 -16.29338 -16.10566 -15.83292 -15.45913 -15.09678 -14.76324 -14.69763 -14.48889 -14.42949 -14.12685 -13.92281 -13.52557 -13.26271 -13.16106 -13.12099 -12.93647 -12.89848 -12.66585 -12.53244 -12.42740 -12.18160 -12.11208 -11.70522 -11.56905 -11.52870 -11.35286 -11.15428 -10.94754 -10.48890 -10.35671 -10.23673 -9.24784 -9.08639 -8.65220 -8.35359 -6.12516 1.27379 1.39530 1.46311 1.58247 1.65255 1.98607 2.25747 2.40226 2.74931 2.97965 2.99372 3.29490 3.49498 3.60970 3.85182 3.99002 4.05737 4.09978 4.12838 4.17800 4.22559 4.28979 4.41363 4.47156 4.53025 4.58137 4.62025 4.71768 4.82590 4.84306 4.90622 4.98253 5.06120 5.15858 5.16579 5.21132 5.22280 5.26613 5.39079 5.48385 5.90144 6.00020 6.05814 6.08750 6.18254 6.54384 6.61237 7.05263 7.44816 7.51509 8.73856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.003896 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.480239 B = 7185.427541 C = 7796.529104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.062 3.938 3 H 0.131 0.869 4 C 0.463 3.537 5 N -0.845 5.845 6 O -0.539 6.539 7 N -0.505 5.505 8 C 0.050 3.950 9 C -0.090 4.090 10 H 0.101 0.899 11 C -0.104 4.104 12 C -0.119 4.119 13 C 0.121 3.879 14 N -0.543 5.543 15 C 0.544 3.456 16 O -0.573 6.573 17 C -0.111 4.111 18 S -0.145 6.145 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.259 1.259 27 C 0.152 3.848 28 H 0.046 0.954 29 C 0.038 3.962 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.410 0.590 34 H 0.397 0.603 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.271 0.729 46 H 0.054 0.946 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 20.911 11.050 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 H 0.149 0.851 4 C 0.247 3.753 5 N -0.409 5.409 6 O -0.416 6.416 7 N -0.228 5.228 8 C -0.077 4.077 9 C -0.109 4.109 10 H 0.119 0.881 11 C -0.142 4.142 12 C -0.156 4.156 13 C -0.002 4.002 14 N -0.273 5.273 15 C 0.332 3.668 16 O -0.454 6.454 17 C -0.263 4.263 18 S 0.082 5.918 19 C -0.694 4.694 20 H 0.093 0.907 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.183 1.183 27 C 0.047 3.953 28 H 0.064 0.936 29 C -0.090 4.090 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.241 0.759 34 H 0.226 0.774 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.505 20.255 12.436 25.598 hybrid contribution 1.233 -0.840 -2.721 3.104 sum 10.739 19.415 9.715 24.220 Atomic orbital electron populations 1.21743 0.91875 1.01522 1.04107 1.22113 0.97722 0.99526 0.85693 0.85107 1.22414 0.80665 0.85267 0.86968 1.43954 1.55195 1.33982 1.07736 1.91016 1.38521 1.25432 1.86669 1.63677 1.15939 1.09649 1.33504 1.23022 0.86237 0.97369 1.01113 1.21748 0.95086 0.93152 1.00901 0.88092 1.21303 0.94469 1.03314 0.95089 1.21858 1.00743 0.96687 0.96346 1.21124 0.82828 0.98751 0.97545 1.46114 1.11914 1.51541 1.17758 1.19681 0.84448 0.77415 0.85273 1.90585 1.23181 1.60707 1.70935 1.23301 1.02831 1.02308 0.97818 1.85430 1.17168 1.68152 1.21014 1.23159 1.01248 1.40610 1.04371 0.90702 1.26092 0.94923 0.95078 1.02770 1.70187 1.08459 1.37872 1.38195 0.84984 0.78097 0.78836 0.76238 1.19337 1.19969 1.18336 1.20904 0.94941 0.95900 0.83508 0.93620 1.23135 0.96871 0.86599 1.02401 0.89609 0.89847 0.95329 0.75938 0.77354 0.92531 0.88390 0.88761 0.91442 0.91277 0.89143 0.91925 0.92719 0.88889 0.89690 0.92003 0.92796 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.12 71.98 0.66 -1.95 16 2 C 0.06 1.22 2.61 44.17 0.12 1.33 16 3 H 0.13 1.74 8.06 -2.39 -0.02 1.72 16 4 C 0.46 11.28 6.07 87.66 0.53 11.82 16 5 N -0.84 -16.19 8.76 -173.53 -1.52 -17.71 16 6 O -0.54 -16.37 6.29 -3.03 -0.02 -16.39 16 7 N -0.50 -11.49 5.09 -868.63 -4.42 -15.91 16 8 C 0.05 0.90 5.51 86.57 0.48 1.38 16 9 C -0.09 -1.74 3.22 -10.78 -0.03 -1.78 16 10 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 11 C -0.10 -1.63 5.45 30.40 0.17 -1.46 16 12 C -0.12 -2.21 5.79 30.71 0.18 -2.04 16 13 C 0.12 3.18 4.60 86.80 0.40 3.58 16 14 N -0.54 -17.51 1.60 -806.21 -1.29 -18.80 16 15 C 0.54 23.13 5.00 87.66 0.44 23.57 16 16 O -0.57 -28.72 13.12 -3.04 -0.04 -28.76 16 17 C -0.11 -5.07 4.56 71.23 0.33 -4.75 16 18 S -0.14 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -32.53 9.50 67.96 0.65 -31.89 16 20 H 0.07 4.22 7.80 -2.91 -0.02 4.20 16 21 C 0.02 0.94 5.49 84.86 0.47 1.41 16 22 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 23 Si 1.00 44.65 29.55 68.60 2.03 46.68 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 C 0.15 4.45 2.92 45.76 0.13 4.58 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 C 0.04 1.19 4.29 86.63 0.37 1.56 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.20 7.55 -2.39 -0.02 1.18 16 32 H 0.03 0.77 7.13 -2.39 -0.02 0.75 16 33 H 0.41 4.97 8.23 -92.71 -0.76 4.20 16 34 H 0.40 8.52 8.93 -92.71 -0.83 7.69 16 35 H 0.06 1.07 4.36 -2.39 -0.01 1.05 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.07 1.43 4.78 -2.39 -0.01 1.42 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.85 5.87 -2.39 -0.01 1.83 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 4.08 7.15 -2.40 -0.02 4.06 16 44 H 0.08 3.69 7.98 -2.40 -0.02 3.67 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.08 2.93 2.80 -2.38 -0.01 2.93 16 Total: -1.00 -80.37 355.85 -1.84 -82.21 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.57 Total: 29.80 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 4.87 Total: 5.36 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -6.95 Total: -109.24 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.06 Total: -45.15 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.37 -1.84 -82.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754871144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.434 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds