Wall clock time and date at job start Wed Apr 1 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46788 * 2 1 4 4 C 1.50700 * 109.47189 * 119.99483 * 2 1 3 5 5 N 1.34777 * 120.00218 * 300.00327 * 4 2 1 6 6 O 1.21276 * 120.00309 * 120.00388 * 4 2 1 7 7 N 1.46892 * 109.47515 * 239.99749 * 2 1 3 8 8 C 1.47314 * 110.99929 * 298.33337 * 7 2 1 9 9 C 1.54263 * 106.33092 * 140.74832 * 8 7 2 10 10 H 1.08997 * 110.47798 * 212.69079 * 9 8 7 11 11 C 1.52530 * 109.19794 * 91.06760 * 9 8 7 12 12 C 1.53291 * 108.84461 * 188.25232 * 11 9 8 13 13 C 1.52962 * 108.00624 * 68.20235 * 12 11 9 14 14 N 1.45175 * 110.60228 * 308.97635 * 13 12 11 15 15 C 1.34778 * 116.73730 * 208.14047 * 14 13 12 16 16 O 1.21285 * 119.99746 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99862 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.46885 * 179.97438 * 17 15 14 19 19 C 1.76190 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00193 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47055 * 89.99817 * 23 21 19 25 25 H 1.48489 * 109.47255 * 210.00015 * 23 21 19 26 26 H 1.48501 * 109.46741 * 329.99899 * 23 21 19 27 27 C 1.43880 * 126.54831 * 28.16202 * 14 13 12 28 28 H 1.08996 * 108.23799 * 220.11135 * 27 14 13 29 29 C 1.47230 * 111.00071 * 59.87083 * 7 2 1 30 30 H 1.09000 * 109.47211 * 60.00624 * 1 2 3 31 31 H 1.09001 * 109.46563 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47280 * 300.00418 * 1 2 3 33 33 H 0.97006 * 119.99958 * 359.97438 * 5 4 2 34 34 H 0.96994 * 120.00643 * 179.97438 * 5 4 2 35 35 H 1.09004 * 110.07803 * 259.95965 * 8 7 2 36 36 H 1.08996 * 110.08326 * 21.52161 * 8 7 2 37 37 H 1.08994 * 109.57490 * 308.06285 * 11 9 8 38 38 H 1.09003 * 109.57139 * 68.44616 * 11 9 8 39 39 H 1.09001 * 109.75245 * 187.82637 * 12 11 9 40 40 H 1.09002 * 109.75596 * 308.51989 * 12 11 9 41 41 H 1.08996 * 109.25672 * 69.27187 * 13 12 11 42 42 H 1.09007 * 109.24603 * 188.73185 * 13 12 11 43 43 H 1.08997 * 109.46981 * 299.99776 * 17 15 14 44 44 H 1.08997 * 109.47245 * 60.00386 * 17 15 14 45 45 H 0.97001 * 120.00083 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.83879 * 356.02538 * 29 7 2 47 47 H 1.09000 * 109.83870 * 116.92651 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7068 -0.2498 2.4546 6 8 2.7297 -1.6963 1.1194 7 7 2.0198 -0.6925 -1.1993 8 6 1.5804 -2.0985 -1.2135 9 6 1.2143 -2.4239 -2.6763 10 1 0.3976 -3.1446 -2.7137 11 6 2.4441 -2.9757 -3.3902 12 6 2.1334 -3.1016 -4.8860 13 6 1.9890 -1.6908 -5.4593 14 7 1.0629 -0.9076 -4.6616 15 6 0.3936 0.0737 -5.2986 16 8 -0.3947 0.7647 -4.6887 17 6 0.6248 0.3120 -6.7685 18 16 -0.4129 1.6857 -7.3275 19 6 0.0463 1.7440 -9.0275 20 1 0.7748 1.0468 -9.4143 21 6 -0.5275 2.6866 -9.8694 22 7 -1.4142 3.5374 -9.3977 23 14 -0.0412 2.7480 -11.6720 24 1 -0.9395 1.8642 -12.4574 25 1 -0.1597 4.1421 -12.1695 26 1 1.3623 2.2865 -11.8220 27 6 0.7878 -1.0731 -3.2591 28 1 -0.2830 -0.9422 -3.1037 29 6 1.5452 -0.0267 -2.4238 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1493 0.5391 2.5436 34 1 2.0297 -0.7071 3.2466 35 1 2.3895 -2.7468 -0.8771 36 1 0.7080 -2.2245 -0.5723 37 1 3.2846 -2.2966 -3.2477 38 1 2.6921 -3.9568 -2.9849 39 1 2.9484 -3.6220 -5.3890 40 1 1.2034 -3.6532 -5.0240 41 1 2.9634 -1.2023 -5.4617 42 1 1.6166 -1.7548 -6.4818 43 1 1.6736 0.5568 -6.9363 44 1 0.3677 -0.5877 -7.3274 45 1 -1.8154 4.1959 -9.9861 46 1 0.8762 0.7934 -2.1633 47 1 2.3947 0.3546 -2.9904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754871145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:53 Heat of formation + Delta-G solvation = -58.440989 kcal Electronic energy + Delta-G solvation = -28512.871515 eV Core-core repulsion = 24628.868930 eV Total energy + Delta-G solvation = -3884.002585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23814 -39.91473 -38.22757 -36.39868 -34.23232 -33.37430 -32.44521 -32.38987 -29.89018 -29.13389 -27.72913 -25.70096 -25.49327 -24.43047 -22.54237 -21.86320 -20.57380 -19.95271 -18.54940 -17.91207 -17.61784 -16.88837 -16.85888 -16.09893 -15.91511 -15.56276 -15.21278 -14.80930 -14.65716 -14.24112 -14.15893 -14.11211 -13.81799 -13.49211 -13.36606 -13.05691 -12.84881 -12.59826 -12.51365 -12.32849 -12.19326 -11.87003 -11.79063 -11.54292 -11.28970 -11.06625 -11.02763 -10.88295 -10.75947 -10.68933 -10.41186 -10.02459 -9.95245 -9.80364 -9.35411 -9.06933 -8.65679 -8.28357 -8.22426 -6.50554 -6.22154 -3.92546 2.36801 2.90327 3.01129 3.09747 3.22055 3.26326 3.30272 3.58997 3.83304 4.19882 4.29755 4.45984 4.51702 4.61852 4.68946 4.78248 4.83056 4.88586 5.00715 5.13086 5.16434 5.18472 5.22708 5.30573 5.40805 5.44203 5.49982 5.56747 5.63799 5.71044 5.77075 5.84930 5.88337 5.91834 5.95628 6.03588 6.08710 6.13477 6.25469 6.43054 6.72477 6.77337 6.89268 7.03830 7.48954 7.59390 7.97990 8.34854 8.54568 9.23362 10.85272 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002547 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.961629 B =10990.700122 C =11962.447047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.111 0.889 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.526 6.526 7 N -0.504 5.504 8 C 0.055 3.945 9 C -0.104 4.104 10 H 0.084 0.916 11 C -0.108 4.108 12 C -0.132 4.132 13 C 0.111 3.889 14 N -0.600 5.600 15 C 0.525 3.475 16 O -0.515 6.515 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.145 3.855 28 H 0.083 0.917 29 C 0.032 3.968 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.401 0.599 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.071 0.929 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 -11.806 20.331 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.056 4.056 3 H 0.129 0.871 4 C 0.308 3.692 5 N -0.423 5.423 6 O -0.400 6.400 7 N -0.228 5.228 8 C -0.072 4.072 9 C -0.123 4.123 10 H 0.102 0.898 11 C -0.146 4.146 12 C -0.170 4.170 13 C -0.012 4.012 14 N -0.335 5.335 15 C 0.312 3.688 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C 0.039 3.961 28 H 0.101 0.899 29 C -0.096 4.096 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.396 -11.269 20.951 24.634 hybrid contribution 0.170 -0.455 -1.469 1.547 sum 6.566 -11.724 19.482 23.666 Atomic orbital electron populations 1.22525 0.94943 1.03390 1.03997 1.21876 0.94390 0.99485 0.89868 0.87143 1.20468 0.79550 0.84310 0.84867 1.43866 1.56356 1.34030 1.08004 1.90734 1.36822 1.25923 1.86558 1.63258 1.57227 1.02129 1.00149 1.22957 0.99948 0.89817 0.94489 1.22023 0.98869 0.96153 0.95283 0.89777 1.21471 0.97432 1.01296 0.94404 1.21860 1.02520 0.96198 0.96385 1.21355 0.93308 0.91505 0.95070 1.46815 1.43640 1.34954 1.08090 1.20491 0.79631 0.79376 0.89252 1.90674 1.34512 1.45909 1.67854 1.23593 1.06110 1.06330 0.94066 1.85363 1.53021 1.36305 1.08887 1.22855 1.29439 1.21615 0.94318 0.90942 1.24988 0.94628 0.94605 0.99354 1.70015 1.26291 1.18016 1.36010 0.86176 0.78945 0.77575 0.82865 1.20279 1.20762 1.19671 1.20836 1.00127 0.94226 0.80945 0.89859 1.23235 0.99268 0.97080 0.90046 0.90138 0.91540 0.91446 0.77099 0.76823 0.88599 0.93427 0.90706 0.91424 0.90284 0.91307 0.91958 0.89783 0.89180 0.89209 0.92205 0.91108 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.54 37.16 0.32 -1.17 16 2 C 0.06 0.51 2.68 -68.87 -0.18 0.32 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.52 4.93 7.04 -10.99 -0.08 4.86 16 5 N -0.86 -4.54 8.77 31.22 0.27 -4.26 16 6 O -0.53 -7.00 15.18 5.56 0.08 -6.91 16 7 N -0.50 -5.68 4.99 -226.06 -1.13 -6.81 16 8 C 0.06 0.59 4.45 -2.94 -0.01 0.58 16 9 C -0.10 -1.08 3.11 -90.11 -0.28 -1.36 16 10 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -1.03 5.01 -26.82 -0.13 -1.17 16 12 C -0.13 -1.21 6.13 -26.60 -0.16 -1.37 16 13 C 0.11 1.27 5.71 -4.77 -0.03 1.25 16 14 N -0.60 -8.55 2.78 -168.46 -0.47 -9.02 16 15 C 0.52 9.76 7.41 -10.98 -0.08 9.68 16 16 O -0.52 -11.27 15.09 5.55 0.08 -11.19 16 17 C -0.15 -3.02 4.59 36.01 0.17 -2.85 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.09 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 23 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.14 1.86 2.61 -68.80 -0.18 1.68 16 28 H 0.08 1.21 7.41 -51.93 -0.38 0.83 16 29 C 0.03 0.41 5.77 -3.21 -0.02 0.39 16 30 H 0.08 0.76 6.32 -51.93 -0.33 0.43 16 31 H 0.07 0.55 6.12 -51.93 -0.32 0.24 16 32 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 33 H 0.40 1.05 8.25 -40.82 -0.34 0.72 16 34 H 0.40 1.75 8.93 -40.82 -0.36 1.39 16 35 H 0.10 1.16 6.91 -51.93 -0.36 0.80 16 36 H 0.05 0.49 5.50 -51.93 -0.29 0.21 16 37 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.97 6.05 -51.93 -0.31 0.66 16 43 H 0.09 1.69 8.01 -51.92 -0.42 1.27 16 44 H 0.09 1.67 7.18 -51.92 -0.37 1.30 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 47 H 0.08 1.15 8.02 -51.93 -0.42 0.74 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -35.62 374.83 -9.59 -45.21 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.10 Total: 2.22 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.48 Total: -1.98 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.59 Total: -45.39 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.17 Total: -18.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.62 -9.59 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754871145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.232 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds