Wall clock time and date at job start Wed Apr 1 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46788 * 2 1 4 4 C 1.50700 * 109.47189 * 119.99483 * 2 1 3 5 5 N 1.34777 * 120.00218 * 300.00327 * 4 2 1 6 6 O 1.21276 * 120.00309 * 120.00388 * 4 2 1 7 7 N 1.46892 * 109.47515 * 239.99749 * 2 1 3 8 8 C 1.47314 * 110.99929 * 298.33337 * 7 2 1 9 9 C 1.54263 * 106.33092 * 140.74832 * 8 7 2 10 10 H 1.08997 * 110.47798 * 212.69079 * 9 8 7 11 11 C 1.52530 * 109.19794 * 91.06760 * 9 8 7 12 12 C 1.53291 * 108.84461 * 188.25232 * 11 9 8 13 13 C 1.52962 * 108.00624 * 68.20235 * 12 11 9 14 14 N 1.45175 * 110.60228 * 308.97635 * 13 12 11 15 15 C 1.34778 * 116.73730 * 208.14047 * 14 13 12 16 16 O 1.21285 * 119.99746 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99862 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.46885 * 179.97438 * 17 15 14 19 19 C 1.76190 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00193 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47055 * 89.99817 * 23 21 19 25 25 H 1.48489 * 109.47255 * 210.00015 * 23 21 19 26 26 H 1.48501 * 109.46741 * 329.99899 * 23 21 19 27 27 C 1.43880 * 126.54831 * 28.16202 * 14 13 12 28 28 H 1.08996 * 108.23799 * 220.11135 * 27 14 13 29 29 C 1.47230 * 111.00071 * 59.87083 * 7 2 1 30 30 H 1.09000 * 109.47211 * 60.00624 * 1 2 3 31 31 H 1.09001 * 109.46563 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47280 * 300.00418 * 1 2 3 33 33 H 0.97006 * 119.99958 * 359.97438 * 5 4 2 34 34 H 0.96994 * 120.00643 * 179.97438 * 5 4 2 35 35 H 1.09004 * 110.07803 * 259.95965 * 8 7 2 36 36 H 1.08996 * 110.08326 * 21.52161 * 8 7 2 37 37 H 1.08994 * 109.57490 * 308.06285 * 11 9 8 38 38 H 1.09003 * 109.57139 * 68.44616 * 11 9 8 39 39 H 1.09001 * 109.75245 * 187.82637 * 12 11 9 40 40 H 1.09002 * 109.75596 * 308.51989 * 12 11 9 41 41 H 1.08996 * 109.25672 * 69.27187 * 13 12 11 42 42 H 1.09007 * 109.24603 * 188.73185 * 13 12 11 43 43 H 1.08997 * 109.46981 * 299.99776 * 17 15 14 44 44 H 1.08997 * 109.47245 * 60.00386 * 17 15 14 45 45 H 0.97001 * 120.00083 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.83879 * 356.02538 * 29 7 2 47 47 H 1.09000 * 109.83870 * 116.92651 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7068 -0.2498 2.4546 6 8 2.7297 -1.6963 1.1194 7 7 2.0198 -0.6925 -1.1993 8 6 1.5804 -2.0985 -1.2135 9 6 1.2143 -2.4239 -2.6763 10 1 0.3976 -3.1446 -2.7137 11 6 2.4441 -2.9757 -3.3902 12 6 2.1334 -3.1016 -4.8860 13 6 1.9890 -1.6908 -5.4593 14 7 1.0629 -0.9076 -4.6616 15 6 0.3936 0.0737 -5.2986 16 8 -0.3947 0.7647 -4.6887 17 6 0.6248 0.3120 -6.7685 18 16 -0.4129 1.6857 -7.3275 19 6 0.0463 1.7440 -9.0275 20 1 0.7748 1.0468 -9.4143 21 6 -0.5275 2.6866 -9.8694 22 7 -1.4142 3.5374 -9.3977 23 14 -0.0412 2.7480 -11.6720 24 1 -0.9395 1.8642 -12.4574 25 1 -0.1597 4.1421 -12.1695 26 1 1.3623 2.2865 -11.8220 27 6 0.7878 -1.0731 -3.2591 28 1 -0.2830 -0.9422 -3.1037 29 6 1.5452 -0.0267 -2.4238 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1493 0.5391 2.5436 34 1 2.0297 -0.7071 3.2466 35 1 2.3895 -2.7468 -0.8771 36 1 0.7080 -2.2245 -0.5723 37 1 3.2846 -2.2966 -3.2477 38 1 2.6921 -3.9568 -2.9849 39 1 2.9484 -3.6220 -5.3890 40 1 1.2034 -3.6532 -5.0240 41 1 2.9634 -1.2023 -5.4617 42 1 1.6166 -1.7548 -6.4818 43 1 1.6736 0.5568 -6.9363 44 1 0.3677 -0.5877 -7.3274 45 1 -1.8154 4.1959 -9.9861 46 1 0.8762 0.7934 -2.1633 47 1 2.3947 0.3546 -2.9904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754871145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:53 Heat of formation + Delta-G solvation = -86.464920 kcal Electronic energy + Delta-G solvation = -28514.086723 eV Core-core repulsion = 24628.868930 eV Total energy + Delta-G solvation = -3885.217793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25692 -40.89406 -39.35174 -37.43418 -35.01111 -34.58236 -34.35457 -33.27791 -31.21599 -30.01566 -28.89450 -27.63940 -26.55225 -25.33681 -23.46010 -22.79180 -21.70905 -20.74102 -19.94824 -19.27114 -18.62909 -18.17475 -17.63018 -17.06506 -17.01163 -16.87202 -16.76929 -16.05763 -16.05527 -15.45550 -15.11665 -15.05907 -14.81508 -14.66825 -14.54164 -14.39770 -13.89886 -13.86041 -13.52655 -13.40069 -13.18107 -13.13202 -12.99445 -12.88495 -12.68672 -12.55025 -12.40071 -12.13512 -11.74366 -11.71247 -11.59351 -11.28991 -11.13642 -10.84554 -10.79555 -10.60254 -10.25546 -9.77888 -9.25644 -8.66176 -8.34160 -6.11884 1.26086 1.42785 1.46176 1.53348 1.56870 1.63649 2.05827 2.27811 2.42079 3.00010 3.00203 3.21770 3.41633 3.55335 3.73893 3.81789 3.89514 3.94104 3.97610 4.01819 4.11767 4.19063 4.24043 4.35654 4.39612 4.44893 4.57045 4.59344 4.63726 4.66001 4.76552 4.83071 4.95833 5.00652 5.06696 5.13786 5.17280 5.22562 5.42635 5.44735 5.69526 5.82481 5.90377 5.98608 6.20093 6.22664 6.48046 7.07349 7.12879 7.36678 8.75021 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002547 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.961629 B =10990.700122 C =11962.447047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 H 0.120 0.880 4 C 0.525 3.475 5 N -0.836 5.836 6 O -0.569 6.569 7 N -0.513 5.513 8 C 0.063 3.937 9 C -0.097 4.097 10 H 0.095 0.905 11 C -0.105 4.105 12 C -0.122 4.122 13 C 0.098 3.902 14 N -0.584 5.584 15 C 0.523 3.477 16 O -0.557 6.557 17 C -0.124 4.124 18 S -0.149 6.149 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 C 0.143 3.857 28 H 0.064 0.936 29 C 0.043 3.957 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.416 0.584 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.060 0.940 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -13.498 20.367 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.059 4.059 3 H 0.138 0.862 4 C 0.309 3.691 5 N -0.401 5.401 6 O -0.447 6.447 7 N -0.237 5.237 8 C -0.064 4.064 9 C -0.116 4.116 10 H 0.114 0.886 11 C -0.142 4.142 12 C -0.160 4.160 13 C -0.023 4.023 14 N -0.317 5.317 15 C 0.311 3.689 16 O -0.434 6.434 17 C -0.275 4.275 18 S 0.078 5.922 19 C -0.692 4.692 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 C 0.037 3.963 28 H 0.082 0.918 29 C -0.086 4.086 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.247 0.753 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.738 -12.975 21.039 25.901 hybrid contribution -0.209 0.041 -1.323 1.340 sum 7.530 -12.933 19.716 24.753 Atomic orbital electron populations 1.22453 0.93917 1.03237 1.04488 1.21964 0.95175 0.99684 0.89077 0.86241 1.20459 0.79109 0.83746 0.85797 1.43667 1.55352 1.34059 1.07001 1.90719 1.38973 1.27796 1.87210 1.63195 1.57642 1.02509 1.00329 1.22856 0.99647 0.89312 0.94586 1.22033 0.99839 0.94816 0.94916 0.88634 1.21455 0.96245 1.01846 0.94685 1.21845 1.03690 0.94492 0.95980 1.21677 0.92885 0.92841 0.94945 1.46802 1.42664 1.33535 1.08660 1.20302 0.79825 0.80126 0.88676 1.90660 1.36627 1.47797 1.68365 1.23418 1.05088 1.03740 0.95252 1.85528 1.55974 1.40684 1.10000 1.23188 1.29626 1.21982 0.94443 0.89952 1.26112 0.94347 0.93953 1.04696 1.70178 1.27687 1.18923 1.37993 0.84971 0.79223 0.77792 0.76118 1.19298 1.20342 1.18186 1.20904 0.99140 0.96072 0.80137 0.91795 1.23013 0.98154 0.96805 0.90621 0.91995 0.91948 0.88582 0.75271 0.75869 0.89484 0.93100 0.91859 0.89599 0.87760 0.90982 0.91023 0.89508 0.87597 0.87363 0.92014 0.92155 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 8.54 71.98 0.61 -2.11 16 2 C 0.05 0.93 2.68 44.17 0.12 1.04 16 3 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.52 9.27 7.04 87.66 0.62 9.88 16 5 N -0.84 -7.19 8.77 -173.54 -1.52 -8.71 16 6 O -0.57 -14.77 15.18 -3.02 -0.05 -14.82 16 7 N -0.51 -11.45 4.99 -869.12 -4.34 -15.79 16 8 C 0.06 1.32 4.45 86.65 0.39 1.70 16 9 C -0.10 -1.90 3.11 -10.46 -0.03 -1.93 16 10 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 11 C -0.10 -1.76 5.01 30.54 0.15 -1.61 16 12 C -0.12 -1.89 6.13 30.68 0.19 -1.70 16 13 C 0.10 2.07 5.71 86.62 0.49 2.57 16 14 N -0.58 -16.34 2.78 -805.28 -2.24 -18.58 16 15 C 0.52 19.70 7.41 87.66 0.65 20.35 16 16 O -0.56 -25.33 15.09 -3.05 -0.05 -25.38 16 17 C -0.12 -4.96 4.59 71.24 0.33 -4.63 16 18 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 19 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.80 13.22 21.65 0.29 -55.52 16 23 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 27 C 0.14 3.68 2.61 45.81 0.12 3.80 16 28 H 0.06 1.92 7.41 -2.39 -0.02 1.90 16 29 C 0.04 1.11 5.77 86.52 0.50 1.61 16 30 H 0.06 1.19 6.32 -2.39 -0.02 1.18 16 31 H 0.06 0.99 6.12 -2.39 -0.01 0.98 16 32 H 0.10 0.84 7.56 -2.39 -0.02 0.83 16 33 H 0.42 1.14 8.25 -92.70 -0.76 0.37 16 34 H 0.41 2.75 8.93 -92.71 -0.83 1.93 16 35 H 0.09 2.03 6.91 -2.38 -0.02 2.01 16 36 H 0.05 1.01 5.50 -2.39 -0.01 1.00 16 37 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 1.81 6.05 -2.38 -0.01 1.79 16 43 H 0.11 3.89 8.01 -2.40 -0.02 3.87 16 44 H 0.11 3.92 7.18 -2.40 -0.02 3.90 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.06 1.66 5.98 -2.39 -0.01 1.65 16 47 H 0.07 1.91 8.02 -2.39 -0.02 1.89 16 Total: -1.00 -80.11 374.83 -2.38 -82.49 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.58 Total: 20.36 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.25 Total: -0.09 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -7.81 Total: -98.59 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.09 Total: -40.19 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -80.11 -2.38 -82.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754871145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.977 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds