Wall clock time and date at job start Wed Apr 1 2020 00:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46504 * 109.47393 * 240.00179 * 2 1 3 5 5 C 1.34772 * 119.99764 * 84.99512 * 4 2 1 6 6 O 1.21280 * 120.00434 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99796 * 180.02562 * 5 4 2 8 8 S 1.80999 * 109.47265 * 180.02562 * 7 5 4 9 9 C 1.76202 * 99.99815 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00061 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99663 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47308 * 60.00117 * 13 11 9 15 15 H 1.48499 * 109.47056 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47218 * 299.99793 * 13 11 9 17 17 C 1.53000 * 109.47070 * 119.99957 * 2 1 3 18 18 C 1.53508 * 114.17117 * 300.00082 * 17 2 1 19 19 N 1.47482 * 87.93417 * 220.32866 * 18 17 2 20 20 C 1.46896 * 110.99974 * 138.70132 * 19 18 17 21 21 C 1.50703 * 109.47254 * 170.00220 * 20 19 18 22 22 O 1.21283 * 119.99488 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00290 * 180.02562 * 21 20 19 24 24 C 1.46498 * 119.99828 * 180.27728 * 23 21 20 25 25 C 1.52996 * 117.49788 * 223.46917 * 24 23 21 26 26 C 1.53005 * 117.50003 * 154.80791 * 24 23 21 27 27 C 1.47484 * 87.83244 * 27.00957 * 19 18 17 28 28 H 1.08999 * 109.47249 * 299.99999 * 1 2 3 29 29 H 1.09008 * 109.47050 * 59.99893 * 1 2 3 30 30 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99819 * 265.00677 * 4 2 1 32 32 H 1.09001 * 109.47041 * 300.00892 * 7 5 4 33 33 H 1.08998 * 109.46937 * 60.00044 * 7 5 4 34 34 H 0.97008 * 119.99790 * 180.02562 * 12 11 9 35 35 H 1.08999 * 113.38370 * 73.08238 * 17 2 1 36 36 H 1.08998 * 113.47545 * 105.56057 * 18 17 2 37 37 H 1.09003 * 113.47546 * 335.09274 * 18 17 2 38 38 H 1.08998 * 109.47322 * 50.00222 * 20 19 18 39 39 H 1.09002 * 109.47668 * 290.00419 * 20 19 18 40 40 H 0.97001 * 119.99727 * 359.97438 * 23 21 20 41 41 H 1.09004 * 115.55144 * 9.13400 * 24 23 21 42 42 H 1.09004 * 117.49811 * 0.02562 * 25 24 23 43 43 H 1.08995 * 117.50167 * 145.01896 * 25 24 23 44 44 H 1.08995 * 117.50170 * 214.97748 * 26 24 23 45 45 H 1.09004 * 117.49249 * 359.97438 * 26 24 23 46 46 H 1.09004 * 113.47420 * 87.75816 * 27 19 18 47 47 H 1.08997 * 113.47610 * 218.21872 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 16 2.7106 0.4345 -4.9731 9 6 3.3123 -0.6311 -6.2408 10 1 3.5210 -1.6677 -6.0209 11 6 3.5190 -0.1380 -7.5217 12 7 3.2650 1.1254 -7.7895 13 14 4.1575 -1.2676 -8.8655 14 1 3.2055 -2.3901 -9.0625 15 1 4.2906 -0.5040 -10.1322 16 1 5.4836 -1.8067 -8.4703 17 6 2.0400 -0.7212 1.2492 18 6 1.5893 -0.0839 2.5710 19 7 2.9423 -0.3452 3.0966 20 6 3.4288 0.7932 3.8873 21 6 4.6941 0.4014 4.6061 22 8 5.1457 -0.7163 4.4731 23 7 5.3232 1.2927 5.3975 24 6 6.5565 0.9137 6.0914 25 6 6.7018 1.3356 7.5549 26 6 7.5265 2.0344 6.4710 27 6 3.4347 -0.2733 1.7083 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 3.6480 -1.1213 -3.3986 33 1 1.9760 -1.5505 -3.8326 34 1 3.4091 1.4699 -8.6848 35 1 1.9097 -1.8026 1.2079 36 1 0.8087 -0.6482 3.0813 37 1 1.3548 0.9770 2.4838 38 1 2.6707 1.0798 4.6162 39 1 3.6327 1.6348 3.2254 40 1 4.9617 2.1865 5.5041 41 1 6.9847 -0.0451 5.7992 42 1 5.8796 1.8948 8.0015 43 1 7.2260 0.6546 8.2253 44 1 8.5929 1.8128 6.4288 45 1 7.2472 3.0537 6.2040 46 1 3.6926 0.7371 1.3908 47 1 4.2182 -0.9981 1.4874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:47 Heat of formation + Delta-G solvation = -8.152787 kcal Electronic energy + Delta-G solvation = -26242.706978 eV Core-core repulsion = 22360.885053 eV Total energy + Delta-G solvation = -3881.821925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05981 -39.81109 -38.93848 -37.38827 -35.19692 -33.31431 -32.42163 -31.84405 -30.15198 -28.48176 -26.42308 -25.64170 -25.46476 -22.95346 -22.90574 -21.80029 -20.91007 -20.43332 -19.81405 -17.88937 -17.57512 -17.08458 -16.59603 -16.39075 -15.98908 -15.69744 -15.01424 -14.92389 -14.81320 -14.79488 -14.46007 -14.04810 -13.86640 -13.36394 -13.17749 -13.13108 -13.03596 -12.75542 -12.62256 -12.24911 -12.10659 -11.97486 -11.84813 -11.74457 -11.26451 -11.04452 -11.03347 -11.02753 -10.97458 -10.78185 -10.72946 -10.17244 -9.81402 -9.40613 -9.28716 -9.19729 -9.05318 -8.84283 -8.23351 -6.49102 -6.20849 -3.91289 2.24027 2.51641 3.02775 3.10641 3.24410 3.28148 3.31545 3.41098 3.63255 3.68271 4.07381 4.21592 4.25799 4.30604 4.40095 4.42894 4.48140 4.63496 4.78007 4.87193 4.93064 5.03278 5.10578 5.14306 5.18087 5.23599 5.27817 5.29718 5.37826 5.43441 5.53844 5.54548 5.59093 5.69321 5.77422 5.84683 5.90900 6.04020 6.04780 6.16122 6.20655 6.53105 6.68889 7.05909 7.60269 7.73924 7.88120 8.35953 8.63267 9.24498 10.86497 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.001778 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.840366 B =15745.823776 C =16874.687546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.520 6.520 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.120 4.120 18 C 0.009 3.991 19 N -0.450 5.450 20 C -0.002 4.002 21 C 0.520 3.480 22 O -0.513 6.513 23 N -0.709 5.709 24 C 0.081 3.919 25 C -0.194 4.194 26 C -0.190 4.190 27 C 0.005 3.995 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 0.063 30.448 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.394 6.394 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.140 4.140 18 C -0.121 4.121 19 N -0.172 5.172 20 C -0.134 4.134 21 C 0.306 3.694 22 O -0.386 6.386 23 N -0.361 5.361 24 C -0.025 4.025 25 C -0.233 4.233 26 C -0.228 4.228 27 C -0.123 4.123 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.235 0.765 41 H 0.155 0.845 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.460 0.774 30.546 30.559 hybrid contribution 0.629 -1.169 -1.011 1.669 sum 1.090 -0.395 29.535 29.558 Atomic orbital electron populations 1.22160 0.95122 1.02248 1.02578 1.20836 0.94174 0.96971 0.83064 0.89560 1.46058 1.69281 1.13979 1.09367 1.20297 0.76721 0.87200 0.83770 1.90689 1.48468 1.15793 1.84452 1.23541 1.03704 1.04854 0.98377 1.85360 1.86363 1.12897 0.98780 1.22837 1.51068 0.98131 0.96400 0.90971 1.24984 0.95084 0.95532 0.97937 1.70008 1.45528 1.13205 1.21590 0.86230 0.79334 0.80029 0.79946 1.19936 1.20819 1.19937 1.22999 0.96162 1.01505 0.93291 1.23872 0.93293 1.00586 0.94319 1.68841 1.04034 1.34672 1.09669 1.22629 0.96122 0.94994 0.99629 1.20509 0.85238 0.84984 0.78713 1.90721 1.65811 1.20334 1.61756 1.45409 1.25905 1.16131 1.48675 1.21584 0.87471 0.99603 0.93829 1.23436 1.03093 1.04270 0.92471 1.23399 0.98252 0.97830 1.03358 1.24035 0.98179 1.01849 0.88263 0.91949 0.91590 0.92371 0.76761 0.89237 0.89231 0.92151 0.87251 0.88985 0.90707 0.87796 0.90396 0.76544 0.84479 0.88521 0.87970 0.87792 0.88415 0.90864 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.29 37.16 0.35 -1.30 16 2 C 0.16 1.67 2.47 -67.93 -0.17 1.50 16 3 H 0.09 1.09 7.33 -51.93 -0.38 0.71 16 4 N -0.73 -9.37 5.08 -53.80 -0.27 -9.65 16 5 C 0.53 9.70 7.81 -10.98 -0.09 9.61 16 6 O -0.52 -11.45 15.52 5.56 0.09 -11.37 16 7 C -0.15 -3.09 6.16 36.01 0.22 -2.86 16 8 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 9 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 13 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.12 -1.02 3.64 -90.09 -0.33 -1.34 16 18 C 0.01 0.06 6.33 -7.55 -0.05 0.01 16 19 N -0.45 -4.15 5.82 -246.09 -1.43 -5.58 16 20 C 0.00 -0.01 5.30 -4.98 -0.03 -0.04 16 21 C 0.52 4.94 7.90 -10.98 -0.09 4.85 16 22 O -0.51 -7.21 16.00 5.55 0.09 -7.12 16 23 N -0.71 -4.67 5.57 -53.80 -0.30 -4.97 16 24 C 0.08 0.56 6.43 -67.93 -0.44 0.12 16 25 C -0.19 -0.95 10.46 -26.69 -0.28 -1.23 16 26 C -0.19 -0.92 10.46 -26.69 -0.28 -1.19 16 27 C 0.01 0.05 7.28 -7.55 -0.05 0.00 16 28 H 0.06 0.50 7.48 -51.93 -0.39 0.11 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 38 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.08 0.45 7.30 -51.93 -0.38 0.07 16 40 H 0.40 1.45 8.83 -40.82 -0.36 1.09 16 41 H 0.14 1.19 7.40 -51.93 -0.38 0.80 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.70 7.21 -51.93 -0.37 0.32 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 406.95 15.07 6.13 6.13 Total: -1.00 -37.27 406.95 -10.87 -48.13 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.64 Total: 2.16 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.03 Total: -4.88 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.27 Total: -45.65 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.49 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.27 -10.87 -48.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.981 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds