Wall clock time and date at job start Wed Apr 1 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46504 * 109.47393 * 240.00179 * 2 1 3 5 5 C 1.34772 * 119.99764 * 84.99512 * 4 2 1 6 6 O 1.21280 * 120.00434 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99796 * 180.02562 * 5 4 2 8 8 S 1.80999 * 109.47265 * 180.02562 * 7 5 4 9 9 C 1.76202 * 99.99815 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00061 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99663 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47308 * 60.00117 * 13 11 9 15 15 H 1.48499 * 109.47056 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47218 * 299.99793 * 13 11 9 17 17 C 1.53000 * 109.47070 * 119.99957 * 2 1 3 18 18 C 1.53508 * 114.17117 * 300.00082 * 17 2 1 19 19 N 1.47482 * 87.93417 * 220.32866 * 18 17 2 20 20 C 1.46896 * 110.99974 * 138.70132 * 19 18 17 21 21 C 1.50703 * 109.47254 * 170.00220 * 20 19 18 22 22 O 1.21283 * 119.99488 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00290 * 180.02562 * 21 20 19 24 24 C 1.46498 * 119.99828 * 180.27728 * 23 21 20 25 25 C 1.52996 * 117.49788 * 223.46917 * 24 23 21 26 26 C 1.53005 * 117.50003 * 154.80791 * 24 23 21 27 27 C 1.47484 * 87.83244 * 27.00957 * 19 18 17 28 28 H 1.08999 * 109.47249 * 299.99999 * 1 2 3 29 29 H 1.09008 * 109.47050 * 59.99893 * 1 2 3 30 30 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99819 * 265.00677 * 4 2 1 32 32 H 1.09001 * 109.47041 * 300.00892 * 7 5 4 33 33 H 1.08998 * 109.46937 * 60.00044 * 7 5 4 34 34 H 0.97008 * 119.99790 * 180.02562 * 12 11 9 35 35 H 1.08999 * 113.38370 * 73.08238 * 17 2 1 36 36 H 1.08998 * 113.47545 * 105.56057 * 18 17 2 37 37 H 1.09003 * 113.47546 * 335.09274 * 18 17 2 38 38 H 1.08998 * 109.47322 * 50.00222 * 20 19 18 39 39 H 1.09002 * 109.47668 * 290.00419 * 20 19 18 40 40 H 0.97001 * 119.99727 * 359.97438 * 23 21 20 41 41 H 1.09004 * 115.55144 * 9.13400 * 24 23 21 42 42 H 1.09004 * 117.49811 * 0.02562 * 25 24 23 43 43 H 1.08995 * 117.50167 * 145.01896 * 25 24 23 44 44 H 1.08995 * 117.50170 * 214.97748 * 26 24 23 45 45 H 1.09004 * 117.49249 * 359.97438 * 26 24 23 46 46 H 1.09004 * 113.47420 * 87.75816 * 27 19 18 47 47 H 1.08997 * 113.47610 * 218.21872 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 16 2.7106 0.4345 -4.9731 9 6 3.3123 -0.6311 -6.2408 10 1 3.5210 -1.6677 -6.0209 11 6 3.5190 -0.1380 -7.5217 12 7 3.2650 1.1254 -7.7895 13 14 4.1575 -1.2676 -8.8655 14 1 3.2055 -2.3901 -9.0625 15 1 4.2906 -0.5040 -10.1322 16 1 5.4836 -1.8067 -8.4703 17 6 2.0400 -0.7212 1.2492 18 6 1.5893 -0.0839 2.5710 19 7 2.9423 -0.3452 3.0966 20 6 3.4288 0.7932 3.8873 21 6 4.6941 0.4014 4.6061 22 8 5.1457 -0.7163 4.4731 23 7 5.3232 1.2927 5.3975 24 6 6.5565 0.9137 6.0914 25 6 6.7018 1.3356 7.5549 26 6 7.5265 2.0344 6.4710 27 6 3.4347 -0.2733 1.7083 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 3.6480 -1.1213 -3.3986 33 1 1.9760 -1.5505 -3.8326 34 1 3.4091 1.4699 -8.6848 35 1 1.9097 -1.8026 1.2079 36 1 0.8087 -0.6482 3.0813 37 1 1.3548 0.9770 2.4838 38 1 2.6707 1.0798 4.6162 39 1 3.6327 1.6348 3.2254 40 1 4.9617 2.1865 5.5041 41 1 6.9847 -0.0451 5.7992 42 1 5.8796 1.8948 8.0015 43 1 7.2260 0.6546 8.2253 44 1 8.5929 1.8128 6.4288 45 1 7.2472 3.0537 6.2040 46 1 3.6926 0.7371 1.3908 47 1 4.2182 -0.9981 1.4874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:46 Heat of formation + Delta-G solvation = -37.968118 kcal Electronic energy + Delta-G solvation = -26243.999868 eV Core-core repulsion = 22360.885053 eV Total energy + Delta-G solvation = -3883.114814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78807 -40.69408 -40.07138 -37.97298 -36.32065 -34.58296 -33.96722 -32.92625 -31.05567 -29.78150 -27.66400 -27.09954 -26.31529 -23.74942 -23.29528 -22.49385 -21.69938 -21.45349 -20.75712 -19.75258 -18.27997 -17.92902 -17.74575 -17.34107 -16.87612 -16.72564 -16.46596 -16.34564 -16.01938 -15.63997 -15.36873 -15.17614 -14.79329 -14.59975 -14.45762 -14.13415 -13.81479 -13.67708 -13.66594 -13.20778 -13.16427 -12.91719 -12.86656 -12.76674 -12.59794 -12.50193 -12.34941 -11.97477 -11.85260 -11.71639 -11.49723 -11.48401 -11.12840 -10.91188 -10.87256 -10.27767 -10.16683 -9.82902 -9.74310 -8.65743 -8.34408 -6.12137 1.27568 1.43697 1.46910 1.56633 1.57098 1.64971 1.97066 2.26359 2.31434 2.96118 2.99568 3.00122 3.30248 3.38776 3.63060 3.74238 3.81330 3.97492 4.01267 4.05136 4.10286 4.18038 4.26465 4.28038 4.30623 4.41065 4.44982 4.49593 4.52799 4.74349 4.75159 4.81416 4.81514 4.85054 4.99920 5.00653 5.18327 5.19625 5.21725 5.36514 5.41805 5.50403 5.59008 5.92363 6.19771 6.53352 6.55021 7.06876 7.26279 7.28776 8.74472 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.001778 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.840366 B =15745.823776 C =16874.687546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.069 0.931 4 N -0.709 5.709 5 C 0.537 3.463 6 O -0.564 6.564 7 C -0.132 4.132 8 S -0.148 6.148 9 C -0.549 4.549 10 H 0.081 0.919 11 C 0.015 3.985 12 N -0.910 5.910 13 Si 0.997 3.003 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.108 4.108 18 C 0.019 3.981 19 N -0.472 5.472 20 C 0.000 4.000 21 C 0.513 3.487 22 O -0.570 6.570 23 N -0.694 5.694 24 C 0.051 3.949 25 C -0.181 4.181 26 C -0.177 4.177 27 C 0.002 3.998 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.071 0.929 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -0.782 32.169 32.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.087 0.913 4 N -0.363 5.363 5 C 0.322 3.678 6 O -0.443 6.443 7 C -0.283 4.283 8 S 0.079 5.921 9 C -0.697 4.697 10 H 0.100 0.900 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.128 4.128 18 C -0.110 4.110 19 N -0.194 5.194 20 C -0.131 4.131 21 C 0.301 3.699 22 O -0.447 6.447 23 N -0.347 5.347 24 C -0.055 4.055 25 C -0.220 4.220 26 C -0.215 4.215 27 C -0.127 4.127 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.251 0.749 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.112 0.888 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.059 -0.068 32.336 32.336 hybrid contribution 0.771 -0.904 -1.363 1.808 sum 0.830 -0.972 30.973 31.000 Atomic orbital electron populations 1.22114 0.94070 1.03067 1.02314 1.20977 0.94871 0.96213 0.82796 0.91307 1.45865 1.67406 1.14589 1.08393 1.19976 0.76643 0.86562 0.84576 1.90678 1.50799 1.17618 1.85183 1.23397 1.05389 1.03259 0.96268 1.85506 1.86733 1.17214 1.02683 1.23186 1.51077 0.98471 0.96950 0.90038 1.26105 0.95044 0.97193 1.00690 1.70172 1.46773 1.15415 1.22307 0.85025 0.79054 0.77795 0.76258 1.18669 1.20308 1.18776 1.22896 0.95427 1.01765 0.92664 1.23904 0.92669 1.01628 0.92804 1.68792 1.05099 1.36176 1.09320 1.22714 0.95647 0.94651 1.00113 1.21023 0.85794 0.84489 0.78626 1.90694 1.67444 1.22695 1.63887 1.45291 1.25409 1.16439 1.47514 1.21572 0.88462 0.99707 0.95777 1.23493 1.03247 1.03874 0.91362 1.23468 0.98120 0.97619 1.02284 1.23996 0.98176 1.01222 0.89304 0.89245 0.94832 0.90976 0.74889 0.87544 0.87362 0.91987 0.86370 0.87478 0.89136 0.84919 0.88796 0.74625 0.87152 0.87306 0.87591 0.87411 0.87119 0.91087 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.29 71.98 0.67 -2.21 16 2 C 0.16 3.13 2.47 44.99 0.11 3.24 16 3 H 0.07 1.69 7.33 -2.39 -0.02 1.67 16 4 N -0.71 -17.23 5.08 -442.52 -2.25 -19.48 16 5 C 0.54 19.42 7.81 87.66 0.68 20.10 16 6 O -0.56 -25.51 15.52 -3.03 -0.05 -25.55 16 7 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 8 S -0.15 -8.26 20.57 -56.49 -1.16 -9.43 16 9 C -0.55 -31.58 9.50 67.96 0.65 -30.93 16 10 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.83 5.49 84.86 0.47 1.30 16 12 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 13 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 17 C -0.11 -1.60 3.64 -10.45 -0.04 -1.64 16 18 C 0.02 0.21 6.33 83.57 0.53 0.74 16 19 N -0.47 -7.92 5.82 -932.49 -5.43 -13.34 16 20 C 0.00 0.00 5.30 85.56 0.45 0.46 16 21 C 0.51 9.53 7.90 87.66 0.69 10.23 16 22 O -0.57 -16.57 16.00 -3.04 -0.05 -16.62 16 23 N -0.69 -8.50 5.57 -442.53 -2.46 -10.97 16 24 C 0.05 0.69 6.43 44.99 0.29 0.98 16 25 C -0.18 -1.51 10.46 30.62 0.32 -1.19 16 26 C -0.18 -1.45 10.46 30.62 0.32 -1.13 16 27 C 0.00 0.04 7.28 83.57 0.61 0.65 16 28 H 0.09 1.15 7.48 -2.39 -0.02 1.14 16 29 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.41 7.57 8.60 -92.71 -0.80 6.78 16 32 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 33 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 34 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 35 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 0.76 7.87 -2.39 -0.02 0.75 16 38 H 0.13 0.86 8.08 -2.39 -0.02 0.84 16 39 H 0.09 0.88 7.30 -2.39 -0.02 0.86 16 40 H 0.42 2.19 8.83 -92.71 -0.82 1.37 16 41 H 0.11 2.09 7.40 -2.39 -0.02 2.07 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.07 1.31 7.21 -2.38 -0.02 1.29 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -85.33 406.95 -3.52 -88.85 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.63 Total: 20.67 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.19 Total: -4.22 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -9.85 Total: -99.56 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.10 Total: -42.17 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.43 kcal Total: -85.33 -3.52 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.880 kcal (2) G-P(sol) polarization free energy of solvation -85.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds