Wall clock time and date at job start Wed Apr 1 2020 00:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47112 * 2 1 4 4 N 1.46496 * 109.47320 * 119.99941 * 2 1 3 5 5 C 1.34780 * 120.00136 * 275.00219 * 4 2 1 6 6 O 1.21277 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00077 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.47346 * 179.97438 * 7 5 4 9 9 C 1.76192 * 100.00269 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.38799 * 120.00148 * 179.97438 * 9 8 7 12 12 N 1.31632 * 119.99583 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46877 * 60.00332 * 13 11 9 15 15 H 1.48500 * 109.47193 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47398 * 300.00528 * 13 11 9 17 17 C 1.53001 * 109.46810 * 240.00227 * 2 1 3 18 18 C 1.53520 * 114.16701 * 174.87385 * 17 2 1 19 19 N 1.47479 * 87.92528 * 220.32522 * 18 17 2 20 20 C 1.46909 * 110.99755 * 138.70604 * 19 18 17 21 21 C 1.50692 * 109.47121 * 169.99792 * 20 19 18 22 22 O 1.21281 * 120.00220 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00165 * 180.02562 * 21 20 19 24 24 C 1.46495 * 120.00452 * 180.27632 * 23 21 20 25 25 C 1.52999 * 117.49955 * 223.47353 * 24 23 21 26 26 C 1.52998 * 117.50355 * 154.80977 * 24 23 21 27 27 C 1.47476 * 87.84001 * 27.01122 * 19 18 17 28 28 H 1.08997 * 109.47112 * 184.94363 * 1 2 3 29 29 H 1.09010 * 109.46741 * 304.94168 * 1 2 3 30 30 H 1.08993 * 109.47305 * 64.93491 * 1 2 3 31 31 H 0.97002 * 120.00125 * 94.99749 * 4 2 1 32 32 H 1.09000 * 109.46747 * 299.99284 * 7 5 4 33 33 H 1.08991 * 109.47719 * 59.99353 * 7 5 4 34 34 H 0.97004 * 119.99445 * 179.97438 * 12 11 9 35 35 H 1.08998 * 113.25483 * 307.81989 * 17 2 1 36 36 H 1.08995 * 113.47263 * 105.56190 * 18 17 2 37 37 H 1.08995 * 113.53202 * 335.09951 * 18 17 2 38 38 H 1.09004 * 109.47111 * 49.99522 * 20 19 18 39 39 H 1.09003 * 109.46620 * 289.99824 * 20 19 18 40 40 H 0.97009 * 119.99724 * 359.97438 * 23 21 20 41 41 H 1.09000 * 115.54994 * 9.13387 * 24 23 21 42 42 H 1.09003 * 117.49927 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.50320 * 145.02256 * 25 24 23 44 44 H 1.08999 * 117.50178 * 214.97653 * 26 24 23 45 45 H 1.08998 * 117.49663 * 359.97438 * 26 24 23 46 46 H 1.09000 * 113.47420 * 87.75154 * 27 19 18 47 47 H 1.09000 * 113.47575 * 218.21767 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6500 -0.7285 3.5874 8 16 2.7115 0.4347 4.9729 9 6 3.3145 -0.6305 6.2402 10 1 3.5239 -1.6670 6.0202 11 6 3.5214 -0.1374 7.5211 12 7 3.2666 1.1259 7.7891 13 14 4.1601 -1.2670 8.8649 14 1 5.4861 -1.8061 8.4695 15 1 4.2945 -0.5030 10.1312 16 1 3.2081 -2.3894 9.0620 17 6 2.0399 -0.7212 -1.2493 18 6 3.5647 -0.6766 -1.4224 19 7 3.3410 -0.4649 -2.8647 20 6 4.2686 0.5412 -3.3991 21 6 4.1826 0.5548 -4.9035 22 8 3.4237 -0.1996 -5.4744 23 7 4.9497 1.4046 -5.6147 24 6 4.8617 1.4222 -7.0769 25 6 6.1725 1.4942 -7.8627 26 6 5.2535 2.7163 -7.7928 27 6 2.0436 0.1441 -2.5172 28 1 -0.3633 -1.0238 0.0886 29 1 -0.3633 0.5887 0.8425 30 1 -0.3633 0.4353 -0.9308 31 1 2.2490 -1.6318 1.1526 32 1 1.9777 -1.5507 3.8325 33 1 3.6492 -1.1203 3.3979 34 1 3.4109 1.4704 8.6843 35 1 1.6044 -1.7115 -1.3824 36 1 4.0554 -1.6225 -1.1934 37 1 4.0343 0.1728 -0.9265 38 1 5.2861 0.2949 -3.0955 39 1 4.0015 1.5241 -3.0109 40 1 5.5570 2.0078 -5.1581 41 1 4.0493 0.8357 -7.5061 42 1 7.1004 1.5289 -7.2917 43 1 6.2224 0.9556 -8.8090 44 1 4.6991 2.9811 -8.6932 45 1 5.5762 3.5549 -7.1758 46 1 2.1064 1.2130 -2.3132 47 1 1.2454 -0.1061 -3.2160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:49 Heat of formation + Delta-G solvation = -8.834561 kcal Electronic energy + Delta-G solvation = -26236.219344 eV Core-core repulsion = 22354.367855 eV Total energy + Delta-G solvation = -3881.851488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05272 -39.82430 -38.93325 -37.40077 -35.20067 -33.32171 -32.43808 -31.82325 -30.19340 -28.49929 -26.20745 -25.86205 -25.47790 -22.93164 -22.87770 -21.76894 -20.91106 -20.39933 -19.92068 -17.90371 -17.60615 -17.09763 -16.43263 -16.37794 -16.18041 -15.65143 -15.02180 -14.94694 -14.82187 -14.80709 -14.48521 -14.09448 -13.70321 -13.45020 -13.17061 -13.16087 -13.05019 -12.74414 -12.65264 -12.23944 -12.12482 -11.95707 -11.86224 -11.62530 -11.31425 -11.06107 -11.05020 -11.04357 -10.99884 -10.78322 -10.74929 -10.17812 -9.83115 -9.41435 -9.27805 -9.20635 -9.07043 -8.86777 -8.25111 -6.51029 -6.22556 -3.93157 2.22716 2.51194 3.00001 3.08944 3.22800 3.26640 3.29675 3.39539 3.64114 3.65232 4.16265 4.19863 4.22327 4.25167 4.40905 4.44907 4.47571 4.63872 4.80388 4.87709 4.95826 5.06574 5.09083 5.12591 5.15695 5.20796 5.27916 5.33940 5.41690 5.43400 5.49411 5.53097 5.57841 5.69800 5.81956 5.84887 5.88527 6.03153 6.04858 6.13764 6.22919 6.53416 6.67092 7.04936 7.58413 7.72527 7.86669 8.34090 8.61699 9.22780 10.84778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.001671 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.284722 B =16751.255609 C =17363.037686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.122 4.122 18 C 0.004 3.996 19 N -0.450 5.450 20 C -0.002 4.002 21 C 0.521 3.479 22 O -0.515 6.515 23 N -0.709 5.709 24 C 0.081 3.919 25 C -0.194 4.194 26 C -0.190 4.190 27 C 0.011 3.989 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.401 0.599 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -0.693 -28.925 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.141 4.141 18 C -0.125 4.125 19 N -0.172 5.172 20 C -0.134 4.134 21 C 0.307 3.693 22 O -0.388 6.388 23 N -0.361 5.361 24 C -0.025 4.025 25 C -0.233 4.233 26 C -0.229 4.229 27 C -0.118 4.118 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.235 0.765 41 H 0.155 0.845 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.124 0.312 -29.585 29.663 hybrid contribution 1.368 -1.400 1.453 2.438 sum 3.492 -1.088 -28.132 28.369 Atomic orbital electron populations 1.22160 0.95111 1.02389 1.02480 1.20835 0.94293 0.96906 0.82998 0.89591 1.46041 1.69298 1.13967 1.09369 1.20299 0.76773 0.87206 0.83750 1.90693 1.48428 1.15815 1.84396 1.23535 1.03648 1.04866 0.98396 1.85374 1.86338 1.12866 0.98807 1.22834 1.51048 0.98155 0.96444 0.90982 1.24985 0.95080 0.95528 0.97930 1.70010 1.45479 1.13215 1.21605 0.86230 0.79311 0.80035 0.79962 1.19956 1.20811 1.19926 1.23026 0.96068 1.00930 0.94078 1.23907 0.96937 1.03105 0.88525 1.68834 1.02260 1.31828 1.14250 1.22640 1.00725 0.97368 0.92696 1.20518 0.79758 0.79591 0.89468 1.90710 1.37388 1.38929 1.71795 1.45425 1.44134 1.40922 1.05650 1.21576 0.99624 1.01322 0.79958 1.23442 0.95187 1.01886 1.02758 1.23397 1.03950 0.92351 1.03167 1.23929 0.94236 0.97598 0.96061 0.92361 0.91632 0.91878 0.76810 0.89243 0.89277 0.92140 0.87229 0.89098 0.90636 0.87694 0.90385 0.76471 0.84510 0.88462 0.87960 0.87836 0.88415 0.90881 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.47 37.16 0.35 -1.37 16 2 C 0.16 1.67 2.34 -67.93 -0.16 1.51 16 3 H 0.09 1.08 7.44 -51.93 -0.39 0.69 16 4 N -0.73 -9.04 4.96 -53.81 -0.27 -9.31 16 5 C 0.53 9.46 7.81 -10.99 -0.09 9.38 16 6 O -0.52 -11.29 15.52 5.56 0.09 -11.21 16 7 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 10 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 13 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 C -0.12 -1.03 3.49 -90.09 -0.31 -1.34 16 18 C 0.00 0.03 7.14 -7.54 -0.05 -0.02 16 19 N -0.45 -4.22 5.82 -246.08 -1.43 -5.65 16 20 C 0.00 -0.02 5.30 -4.97 -0.03 -0.04 16 21 C 0.52 4.86 7.90 -10.99 -0.09 4.77 16 22 O -0.51 -7.00 16.00 5.56 0.09 -6.91 16 23 N -0.71 -4.60 5.57 -53.81 -0.30 -4.90 16 24 C 0.08 0.53 6.43 -67.93 -0.44 0.09 16 25 C -0.19 -0.93 10.46 -26.69 -0.28 -1.21 16 26 C -0.19 -0.85 10.46 -26.69 -0.28 -1.13 16 27 C 0.01 0.10 7.26 -7.55 -0.05 0.04 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 38 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.08 0.46 7.30 -51.93 -0.38 0.09 16 40 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 41 H 0.14 1.12 7.40 -51.93 -0.38 0.73 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.58 7.28 -51.93 -0.38 0.20 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -36.68 408.34 -10.86 -47.54 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.68 Total: 2.10 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.00 Total: -4.96 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.26 Total: -45.09 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.68 -10.86 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds