Wall clock time and date at job start Wed Apr 1 2020 00:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47112 * 2 1 4 4 N 1.46496 * 109.47320 * 119.99941 * 2 1 3 5 5 C 1.34780 * 120.00136 * 275.00219 * 4 2 1 6 6 O 1.21277 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00077 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.47346 * 179.97438 * 7 5 4 9 9 C 1.76192 * 100.00269 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.38799 * 120.00148 * 179.97438 * 9 8 7 12 12 N 1.31632 * 119.99583 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46877 * 60.00332 * 13 11 9 15 15 H 1.48500 * 109.47193 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47398 * 300.00528 * 13 11 9 17 17 C 1.53001 * 109.46810 * 240.00227 * 2 1 3 18 18 C 1.53520 * 114.16701 * 174.87385 * 17 2 1 19 19 N 1.47479 * 87.92528 * 220.32522 * 18 17 2 20 20 C 1.46909 * 110.99755 * 138.70604 * 19 18 17 21 21 C 1.50692 * 109.47121 * 169.99792 * 20 19 18 22 22 O 1.21281 * 120.00220 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00165 * 180.02562 * 21 20 19 24 24 C 1.46495 * 120.00452 * 180.27632 * 23 21 20 25 25 C 1.52999 * 117.49955 * 223.47353 * 24 23 21 26 26 C 1.52998 * 117.50355 * 154.80977 * 24 23 21 27 27 C 1.47476 * 87.84001 * 27.01122 * 19 18 17 28 28 H 1.08997 * 109.47112 * 184.94363 * 1 2 3 29 29 H 1.09010 * 109.46741 * 304.94168 * 1 2 3 30 30 H 1.08993 * 109.47305 * 64.93491 * 1 2 3 31 31 H 0.97002 * 120.00125 * 94.99749 * 4 2 1 32 32 H 1.09000 * 109.46747 * 299.99284 * 7 5 4 33 33 H 1.08991 * 109.47719 * 59.99353 * 7 5 4 34 34 H 0.97004 * 119.99445 * 179.97438 * 12 11 9 35 35 H 1.08998 * 113.25483 * 307.81989 * 17 2 1 36 36 H 1.08995 * 113.47263 * 105.56190 * 18 17 2 37 37 H 1.08995 * 113.53202 * 335.09951 * 18 17 2 38 38 H 1.09004 * 109.47111 * 49.99522 * 20 19 18 39 39 H 1.09003 * 109.46620 * 289.99824 * 20 19 18 40 40 H 0.97009 * 119.99724 * 359.97438 * 23 21 20 41 41 H 1.09000 * 115.54994 * 9.13387 * 24 23 21 42 42 H 1.09003 * 117.49927 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.50320 * 145.02256 * 25 24 23 44 44 H 1.08999 * 117.50178 * 214.97653 * 26 24 23 45 45 H 1.08998 * 117.49663 * 359.97438 * 26 24 23 46 46 H 1.09000 * 113.47420 * 87.75154 * 27 19 18 47 47 H 1.09000 * 113.47575 * 218.21767 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6500 -0.7285 3.5874 8 16 2.7115 0.4347 4.9729 9 6 3.3145 -0.6305 6.2402 10 1 3.5239 -1.6670 6.0202 11 6 3.5214 -0.1374 7.5211 12 7 3.2666 1.1259 7.7891 13 14 4.1601 -1.2670 8.8649 14 1 5.4861 -1.8061 8.4695 15 1 4.2945 -0.5030 10.1312 16 1 3.2081 -2.3894 9.0620 17 6 2.0399 -0.7212 -1.2493 18 6 3.5647 -0.6766 -1.4224 19 7 3.3410 -0.4649 -2.8647 20 6 4.2686 0.5412 -3.3991 21 6 4.1826 0.5548 -4.9035 22 8 3.4237 -0.1996 -5.4744 23 7 4.9497 1.4046 -5.6147 24 6 4.8617 1.4222 -7.0769 25 6 6.1725 1.4942 -7.8627 26 6 5.2535 2.7163 -7.7928 27 6 2.0436 0.1441 -2.5172 28 1 -0.3633 -1.0238 0.0886 29 1 -0.3633 0.5887 0.8425 30 1 -0.3633 0.4353 -0.9308 31 1 2.2490 -1.6318 1.1526 32 1 1.9777 -1.5507 3.8325 33 1 3.6492 -1.1203 3.3979 34 1 3.4109 1.4704 8.6843 35 1 1.6044 -1.7115 -1.3824 36 1 4.0554 -1.6225 -1.1934 37 1 4.0343 0.1728 -0.9265 38 1 5.2861 0.2949 -3.0955 39 1 4.0015 1.5241 -3.0109 40 1 5.5570 2.0078 -5.1581 41 1 4.0493 0.8357 -7.5061 42 1 7.1004 1.5289 -7.2917 43 1 6.2224 0.9556 -8.8090 44 1 4.6991 2.9811 -8.6932 45 1 5.5762 3.5549 -7.1758 46 1 2.1064 1.2130 -2.3132 47 1 1.2454 -0.1061 -3.2160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:48 Heat of formation + Delta-G solvation = -37.717265 kcal Electronic energy + Delta-G solvation = -26237.471792 eV Core-core repulsion = 22354.367855 eV Total energy + Delta-G solvation = -3883.103936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79396 -40.69021 -40.04706 -37.96669 -36.31637 -34.56780 -33.95978 -32.90769 -31.07678 -29.80295 -27.64493 -26.88652 -26.57555 -23.66019 -23.28883 -22.46946 -21.68011 -21.44318 -20.82352 -19.75966 -18.31116 -17.90416 -17.71872 -17.24942 -16.86212 -16.84553 -16.39179 -16.36008 -16.01340 -15.63291 -15.36799 -15.21401 -14.73417 -14.57772 -14.37083 -14.23952 -13.81297 -13.69197 -13.65531 -13.25775 -13.15132 -13.02786 -12.85559 -12.61983 -12.58058 -12.45733 -12.31820 -12.05908 -11.87904 -11.70355 -11.51011 -11.46800 -11.11439 -10.91325 -10.85951 -10.25337 -10.15231 -9.84899 -9.74574 -8.64116 -8.33077 -6.10607 1.28953 1.44764 1.48365 1.55757 1.58210 1.67176 1.96313 2.26153 2.31268 2.96773 2.99910 3.01072 3.31305 3.44057 3.57451 3.76985 3.82709 3.99211 4.00320 4.05541 4.08570 4.16221 4.25918 4.27418 4.33129 4.39247 4.44970 4.48762 4.55352 4.74996 4.75139 4.79658 4.81526 4.82794 4.99824 5.01007 5.18368 5.18871 5.21889 5.35503 5.43253 5.50504 5.56678 5.90590 6.21106 6.52226 6.57824 7.08398 7.24955 7.31253 8.75728 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.001671 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.284722 B =16751.255609 C =17363.037686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.069 0.931 4 N -0.706 5.706 5 C 0.537 3.463 6 O -0.565 6.565 7 C -0.130 4.130 8 S -0.150 6.150 9 C -0.548 4.548 10 H 0.082 0.918 11 C 0.015 3.985 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.263 1.263 17 C -0.107 4.107 18 C 0.008 3.992 19 N -0.470 5.470 20 C -0.001 4.001 21 C 0.517 3.483 22 O -0.567 6.567 23 N -0.695 5.695 24 C 0.053 3.947 25 C -0.186 4.186 26 C -0.174 4.174 27 C 0.013 3.987 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.271 0.729 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.416 0.584 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -2.152 -29.761 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.087 0.913 4 N -0.360 5.360 5 C 0.323 3.677 6 O -0.444 6.444 7 C -0.282 4.282 8 S 0.077 5.923 9 C -0.696 4.696 10 H 0.101 0.899 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.818 3.182 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.127 4.127 18 C -0.121 4.121 19 N -0.192 5.192 20 C -0.133 4.133 21 C 0.304 3.696 22 O -0.444 6.444 23 N -0.347 5.347 24 C -0.053 4.053 25 C -0.224 4.224 26 C -0.213 4.213 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.253 0.747 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.097 0.903 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.435 -1.161 -30.470 30.685 hybrid contribution 0.961 -0.938 1.522 2.030 sum 4.397 -2.100 -28.948 29.355 Atomic orbital electron populations 1.22124 0.94723 1.02759 1.02190 1.20911 0.94510 0.96281 0.82965 0.91262 1.45784 1.67388 1.14601 1.08183 1.19991 0.76627 0.86533 0.84541 1.90687 1.50783 1.17761 1.85133 1.23384 1.05538 1.03151 0.96100 1.85544 1.86721 1.17251 1.02812 1.23187 1.50909 0.98520 0.96955 0.89948 1.26099 0.95080 0.97150 1.00695 1.70178 1.46827 1.15452 1.22277 0.85030 0.79090 0.77777 0.76266 1.18651 1.20455 1.18748 1.22903 0.96295 1.01015 0.92464 1.23891 0.96625 1.03448 0.88095 1.68799 1.02830 1.32904 1.14687 1.22706 1.01373 0.97883 0.91308 1.20888 0.79237 0.79152 0.90293 1.90685 1.39720 1.41206 1.72790 1.45314 1.43455 1.40220 1.05752 1.21581 1.00377 1.03271 0.80055 1.23499 0.94583 1.01839 1.02492 1.23466 1.02968 0.91898 1.02920 1.23919 0.94070 0.97968 0.95701 0.91101 0.94667 0.89971 0.74743 0.87456 0.87167 0.92037 0.86119 0.88393 0.90686 0.85861 0.88647 0.74728 0.86826 0.87630 0.87541 0.87161 0.87210 0.90263 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 9.47 71.98 0.68 -2.50 16 2 C 0.16 3.17 2.34 44.99 0.11 3.27 16 3 H 0.07 1.69 7.44 -2.38 -0.02 1.67 16 4 N -0.71 -16.09 4.96 -442.54 -2.19 -18.28 16 5 C 0.54 18.67 7.81 87.66 0.68 19.35 16 6 O -0.57 -25.04 15.52 -3.02 -0.05 -25.08 16 7 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 8 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 9 C -0.55 -30.92 9.50 67.95 0.65 -30.27 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 11 C 0.01 0.82 5.49 84.86 0.47 1.29 16 12 N -0.91 -55.50 13.22 21.65 0.29 -55.22 16 13 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 14 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 17 C -0.11 -1.59 3.49 -10.45 -0.04 -1.62 16 18 C 0.01 0.12 7.14 83.58 0.60 0.71 16 19 N -0.47 -8.10 5.82 -932.46 -5.43 -13.53 16 20 C 0.00 -0.02 5.30 85.55 0.45 0.44 16 21 C 0.52 9.36 7.90 87.65 0.69 10.06 16 22 O -0.57 -15.70 16.00 -3.03 -0.05 -15.75 16 23 N -0.70 -8.34 5.57 -442.56 -2.46 -10.80 16 24 C 0.05 0.67 6.43 44.99 0.29 0.96 16 25 C -0.19 -1.52 10.46 30.62 0.32 -1.20 16 26 C -0.17 -1.27 10.46 30.62 0.32 -0.95 16 27 C 0.01 0.20 7.26 83.58 0.61 0.81 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.42 6.78 8.60 -92.71 -0.80 5.98 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 38 H 0.12 1.17 8.08 -2.38 -0.02 1.15 16 39 H 0.10 0.94 7.30 -2.39 -0.02 0.92 16 40 H 0.42 2.36 8.83 -92.70 -0.82 1.54 16 41 H 0.11 1.98 7.40 -2.39 -0.02 1.96 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.08 1.14 7.28 -2.39 -0.02 1.13 16 47 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -82.80 408.34 -3.39 -86.19 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.63 Total: 20.89 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.26 Total: -4.19 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -9.80 Total: -97.83 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.10 Total: -40.83 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -82.80 -3.39 -86.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.475 kcal (2) G-P(sol) polarization free energy of solvation -82.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds