Wall clock time and date at job start Wed Apr 1 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46928 * 2 1 4 4 N 1.46494 * 109.47026 * 239.99908 * 2 1 3 5 5 C 1.34785 * 119.99992 * 85.00357 * 4 2 1 6 6 O 1.21272 * 119.99803 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99695 * 179.97438 * 5 4 2 8 8 S 1.81004 * 109.46947 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00038 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00093 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99882 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47285 * 59.99483 * 13 11 9 15 15 H 1.48499 * 109.46888 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46507 * 299.99417 * 13 11 9 17 17 C 1.52999 * 109.47140 * 119.99919 * 2 1 3 18 18 C 1.53933 * 113.73118 * 280.95046 * 17 2 1 19 19 N 1.47961 * 86.18135 * 221.92106 * 18 17 2 20 20 C 1.46894 * 111.00435 * 137.57943 * 19 18 17 21 21 H 1.08998 * 110.43728 * 202.13746 * 20 19 18 22 22 C 1.54638 * 110.48472 * 79.60342 * 20 19 18 23 23 C 1.54477 * 101.76309 * 216.52144 * 22 20 19 24 24 N 1.46763 * 105.47477 * 25.42030 * 23 22 20 25 25 C 1.46496 * 124.35183 * 162.98401 * 24 23 22 26 26 C 1.34652 * 111.33652 * 342.86453 * 24 23 22 27 27 O 1.21279 * 125.07490 * 180.52512 * 26 24 23 28 28 C 1.47964 * 90.76128 * 24.68813 * 19 18 17 29 29 H 1.08995 * 109.47207 * 297.54169 * 1 2 3 30 30 H 1.09004 * 109.46957 * 57.54443 * 1 2 3 31 31 H 1.09004 * 109.47097 * 177.54137 * 1 2 3 32 32 H 0.96997 * 120.00099 * 264.99742 * 4 2 1 33 33 H 1.09002 * 109.47414 * 299.99379 * 7 5 4 34 34 H 1.08997 * 109.47632 * 59.99812 * 7 5 4 35 35 H 0.96997 * 120.00056 * 180.02562 * 12 11 9 36 36 H 1.08997 * 112.94039 * 52.64851 * 17 2 1 37 37 H 1.09006 * 113.76197 * 336.23506 * 18 17 2 38 38 H 1.09000 * 113.76278 * 107.60286 * 18 17 2 39 39 H 1.08998 * 110.96639 * 334.64190 * 22 20 19 40 40 H 1.09001 * 110.96974 * 98.36555 * 22 20 19 41 41 H 1.09005 * 110.24253 * 144.41269 * 23 22 20 42 42 H 1.08989 * 110.25018 * 266.32340 * 23 22 20 43 43 H 1.08999 * 109.47889 * 89.99303 * 25 24 23 44 44 H 1.09006 * 109.47095 * 209.99736 * 25 24 23 45 45 H 1.09002 * 109.47215 * 329.99389 * 25 24 23 46 46 H 1.09002 * 113.75756 * 220.99799 * 28 19 18 47 47 H 1.09000 * 113.75555 * 89.63022 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8583 1.1584 -2.4117 7 6 2.6500 -0.7285 -3.5874 8 16 2.7101 0.4343 -4.9732 9 6 3.3133 -0.6310 -6.2405 10 1 3.5235 -1.6672 -6.0203 11 6 3.5194 -0.1381 -7.5215 12 7 3.2637 1.1250 -7.7899 13 14 4.1582 -1.2677 -8.8653 14 1 3.2068 -2.3908 -9.0617 15 1 4.2904 -0.5042 -10.1322 16 1 5.4847 -1.8058 -8.4703 17 6 2.0400 -0.7212 1.2492 18 6 1.9942 0.1403 2.5241 19 7 3.3245 -0.4271 2.8364 20 6 4.2324 0.6091 3.3462 21 1 5.2705 0.3075 3.2069 22 6 3.9468 0.8919 4.8394 23 6 4.1809 2.4167 4.9214 24 7 3.9365 2.9239 3.5661 25 6 3.6926 4.3315 3.2418 26 6 3.9678 1.9301 2.6581 27 8 3.8064 2.0714 1.4644 28 6 3.5715 -0.6892 1.4013 29 1 -0.3633 0.4752 0.9112 30 1 -0.3633 0.5515 -0.8672 31 1 -0.3633 -1.0268 -0.0441 32 1 2.2491 -1.6317 -1.1526 33 1 3.6493 -1.1203 -3.3978 34 1 1.9778 -1.5508 -3.8325 35 1 3.4073 1.4693 -8.6852 36 1 1.6075 -1.7140 1.3730 37 1 2.0088 1.2129 2.3301 38 1 1.2147 -0.1555 3.2263 39 1 2.9170 0.6411 5.0938 40 1 4.6466 0.3542 5.4791 41 1 3.4814 2.8683 5.6249 42 1 5.2069 2.6250 5.2244 43 1 4.6413 4.8263 3.0339 44 1 3.0492 4.3959 2.3641 45 1 3.2055 4.8198 4.0859 46 1 4.0523 -1.6479 1.2064 47 1 4.0474 0.1407 0.8789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:05 Heat of formation + Delta-G solvation = -22.715163 kcal Electronic energy + Delta-G solvation = -27969.735114 eV Core-core repulsion = 24087.281718 eV Total energy + Delta-G solvation = -3882.453396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83267 -39.53823 -38.50557 -36.78831 -35.07686 -32.92861 -32.36940 -31.16518 -28.89603 -28.30878 -27.25754 -26.34642 -25.50487 -25.38052 -22.61761 -21.70985 -20.22398 -20.06308 -19.36361 -17.84172 -17.26567 -17.06839 -16.37651 -16.30770 -15.97479 -15.21884 -15.03017 -14.75482 -14.74431 -14.35978 -14.26506 -13.96840 -13.75972 -13.44915 -13.09216 -13.05940 -12.84217 -12.65210 -12.55139 -12.47832 -12.36321 -12.17050 -11.87147 -11.70503 -11.48087 -10.99928 -10.99159 -10.96438 -10.82769 -10.74873 -10.70853 -10.54585 -9.75584 -9.22816 -9.14533 -9.00563 -8.87871 -8.66293 -8.15349 -6.42284 -6.15585 -3.85336 2.18995 2.60499 3.12069 3.26339 3.27875 3.31291 3.36063 3.46216 3.77331 3.94653 4.03557 4.26423 4.29248 4.44770 4.49316 4.58758 4.80416 4.88857 4.99084 5.02439 5.09481 5.16012 5.19081 5.27946 5.30778 5.34764 5.37742 5.41067 5.44694 5.48714 5.54679 5.65593 5.69003 5.80075 5.89246 5.99056 5.99881 6.10822 6.23358 6.23644 6.37759 6.58185 6.71797 6.84873 7.64914 7.80488 7.89871 8.40937 8.79888 9.29331 10.91796 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002315 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.953546 B =12091.682755 C =12525.075108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.533 3.467 6 O -0.516 6.516 7 C -0.152 4.152 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.117 4.117 18 C 0.004 3.996 19 N -0.456 5.456 20 C 0.015 3.985 21 H 0.118 0.882 22 C -0.119 4.119 23 C 0.101 3.899 24 N -0.625 5.625 25 C 0.094 3.906 26 C 0.489 3.511 27 O -0.507 6.507 28 C -0.002 4.002 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -1.718 31.395 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.113 0.887 4 N -0.385 5.385 5 C 0.319 3.681 6 O -0.390 6.390 7 C -0.303 4.303 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.504 5.504 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.136 4.136 18 C -0.125 4.125 19 N -0.178 5.178 20 C -0.098 4.098 21 H 0.136 0.864 22 C -0.157 4.157 23 C -0.023 4.023 24 N -0.361 5.361 25 C -0.048 4.048 26 C 0.275 3.725 27 O -0.382 6.382 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.470 0.050 30.991 30.994 hybrid contribution 0.936 -1.732 -1.146 2.278 sum 0.466 -1.681 29.845 29.896 Atomic orbital electron populations 1.22161 0.95627 1.01918 1.02300 1.20892 0.93655 0.97826 0.82918 0.88703 1.45977 1.69366 1.13701 1.09448 1.20252 0.76939 0.87215 0.83739 1.90695 1.48222 1.15715 1.84346 1.23526 1.03579 1.04745 0.98461 1.85403 1.86250 1.13016 0.98703 1.22839 1.50883 0.98151 0.96423 0.91031 1.24991 0.95175 0.95523 0.97937 1.70016 1.45609 1.13226 1.21520 0.86234 0.79306 0.80029 0.79979 1.19964 1.20849 1.19965 1.23165 0.96372 1.00045 0.94057 1.24121 0.92859 0.99077 0.96434 1.68804 1.01854 1.29349 1.17774 1.23036 1.00963 0.89820 0.95943 0.86450 1.22598 1.04249 0.94094 0.94728 1.22141 1.01812 0.94532 0.83783 1.48315 1.71331 1.07910 1.08549 1.21586 1.01614 0.79586 1.02041 1.21782 0.76288 0.87620 0.86815 1.90826 1.48865 1.84838 1.13671 1.24265 0.96748 1.03682 0.88319 0.92256 0.91727 0.92622 0.77138 0.89364 0.89372 0.92194 0.88063 0.90189 0.89216 0.89375 0.88639 0.90175 0.90887 0.92461 0.90392 0.91038 0.89388 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.45 37.16 0.35 -1.65 16 2 C 0.15 2.06 2.30 -67.93 -0.16 1.90 16 3 H 0.09 1.64 7.06 -51.93 -0.37 1.27 16 4 N -0.73 -10.76 4.93 -53.81 -0.27 -11.03 16 5 C 0.53 10.69 7.81 -10.98 -0.09 10.60 16 6 O -0.52 -12.56 15.52 5.56 0.09 -12.48 16 7 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 8 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 9 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 10 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 11 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 12 N -0.87 -26.84 13.22 55.49 0.73 -26.10 16 13 Si 0.92 21.91 29.55 -169.99 -5.02 16.88 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.12 -1.20 3.35 -89.69 -0.30 -1.50 16 18 C 0.00 0.04 6.65 -2.77 -0.02 0.02 16 19 N -0.46 -4.24 6.23 -230.29 -1.43 -5.67 16 20 C 0.02 0.13 3.11 -67.72 -0.21 -0.08 16 21 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.12 -0.59 6.77 -25.10 -0.17 -0.76 16 23 C 0.10 0.47 7.35 -3.12 -0.02 0.45 16 24 N -0.63 -5.20 3.34 -180.23 -0.60 -5.80 16 25 C 0.09 0.69 10.96 59.84 0.66 1.35 16 26 C 0.49 5.43 5.52 -10.76 -0.06 5.37 16 27 O -0.51 -7.92 13.58 5.56 0.08 -7.85 16 28 C 0.00 -0.02 7.07 -2.77 -0.02 -0.04 16 29 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.40 4.61 8.60 -40.82 -0.35 4.26 16 33 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.92 5.18 -51.93 -0.27 0.66 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.45 7.80 -51.93 -0.40 0.05 16 40 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.26 8.14 -51.94 -0.42 -0.16 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.10 1.45 5.57 -51.93 -0.29 1.16 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -37.69 391.96 -9.90 -47.59 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.55 Total: 3.19 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.38 Total: -0.73 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -1.57 Total: -48.61 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.16 Total: -20.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.69 -9.90 -47.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.874 kcal (2) G-P(sol) polarization free energy of solvation -37.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds