Wall clock time and date at job start Wed Apr 1 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46928 * 2 1 4 4 N 1.46494 * 109.47026 * 239.99908 * 2 1 3 5 5 C 1.34785 * 119.99992 * 85.00357 * 4 2 1 6 6 O 1.21272 * 119.99803 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99695 * 179.97438 * 5 4 2 8 8 S 1.81004 * 109.46947 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00038 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00093 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99882 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47285 * 59.99483 * 13 11 9 15 15 H 1.48499 * 109.46888 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46507 * 299.99417 * 13 11 9 17 17 C 1.52999 * 109.47140 * 119.99919 * 2 1 3 18 18 C 1.53933 * 113.73118 * 280.95046 * 17 2 1 19 19 N 1.47961 * 86.18135 * 221.92106 * 18 17 2 20 20 C 1.46894 * 111.00435 * 137.57943 * 19 18 17 21 21 H 1.08998 * 110.43728 * 202.13746 * 20 19 18 22 22 C 1.54638 * 110.48472 * 79.60342 * 20 19 18 23 23 C 1.54477 * 101.76309 * 216.52144 * 22 20 19 24 24 N 1.46763 * 105.47477 * 25.42030 * 23 22 20 25 25 C 1.46496 * 124.35183 * 162.98401 * 24 23 22 26 26 C 1.34652 * 111.33652 * 342.86453 * 24 23 22 27 27 O 1.21279 * 125.07490 * 180.52512 * 26 24 23 28 28 C 1.47964 * 90.76128 * 24.68813 * 19 18 17 29 29 H 1.08995 * 109.47207 * 297.54169 * 1 2 3 30 30 H 1.09004 * 109.46957 * 57.54443 * 1 2 3 31 31 H 1.09004 * 109.47097 * 177.54137 * 1 2 3 32 32 H 0.96997 * 120.00099 * 264.99742 * 4 2 1 33 33 H 1.09002 * 109.47414 * 299.99379 * 7 5 4 34 34 H 1.08997 * 109.47632 * 59.99812 * 7 5 4 35 35 H 0.96997 * 120.00056 * 180.02562 * 12 11 9 36 36 H 1.08997 * 112.94039 * 52.64851 * 17 2 1 37 37 H 1.09006 * 113.76197 * 336.23506 * 18 17 2 38 38 H 1.09000 * 113.76278 * 107.60286 * 18 17 2 39 39 H 1.08998 * 110.96639 * 334.64190 * 22 20 19 40 40 H 1.09001 * 110.96974 * 98.36555 * 22 20 19 41 41 H 1.09005 * 110.24253 * 144.41269 * 23 22 20 42 42 H 1.08989 * 110.25018 * 266.32340 * 23 22 20 43 43 H 1.08999 * 109.47889 * 89.99303 * 25 24 23 44 44 H 1.09006 * 109.47095 * 209.99736 * 25 24 23 45 45 H 1.09002 * 109.47215 * 329.99389 * 25 24 23 46 46 H 1.09002 * 113.75756 * 220.99799 * 28 19 18 47 47 H 1.09000 * 113.75555 * 89.63022 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8583 1.1584 -2.4117 7 6 2.6500 -0.7285 -3.5874 8 16 2.7101 0.4343 -4.9732 9 6 3.3133 -0.6310 -6.2405 10 1 3.5235 -1.6672 -6.0203 11 6 3.5194 -0.1381 -7.5215 12 7 3.2637 1.1250 -7.7899 13 14 4.1582 -1.2677 -8.8653 14 1 3.2068 -2.3908 -9.0617 15 1 4.2904 -0.5042 -10.1322 16 1 5.4847 -1.8058 -8.4703 17 6 2.0400 -0.7212 1.2492 18 6 1.9942 0.1403 2.5241 19 7 3.3245 -0.4271 2.8364 20 6 4.2324 0.6091 3.3462 21 1 5.2705 0.3075 3.2069 22 6 3.9468 0.8919 4.8394 23 6 4.1809 2.4167 4.9214 24 7 3.9365 2.9239 3.5661 25 6 3.6926 4.3315 3.2418 26 6 3.9678 1.9301 2.6581 27 8 3.8064 2.0714 1.4644 28 6 3.5715 -0.6892 1.4013 29 1 -0.3633 0.4752 0.9112 30 1 -0.3633 0.5515 -0.8672 31 1 -0.3633 -1.0268 -0.0441 32 1 2.2491 -1.6317 -1.1526 33 1 3.6493 -1.1203 -3.3978 34 1 1.9778 -1.5508 -3.8325 35 1 3.4073 1.4693 -8.6852 36 1 1.6075 -1.7140 1.3730 37 1 2.0088 1.2129 2.3301 38 1 1.2147 -0.1555 3.2263 39 1 2.9170 0.6411 5.0938 40 1 4.6466 0.3542 5.4791 41 1 3.4814 2.8683 5.6249 42 1 5.2069 2.6250 5.2244 43 1 4.6413 4.8263 3.0339 44 1 3.0492 4.3959 2.3641 45 1 3.2055 4.8198 4.0859 46 1 4.0523 -1.6479 1.2064 47 1 4.0474 0.1407 0.8789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:05 Heat of formation + Delta-G solvation = -53.232150 kcal Electronic energy + Delta-G solvation = -27971.058430 eV Core-core repulsion = 24087.281718 eV Total energy + Delta-G solvation = -3883.776712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59506 -40.79359 -39.60974 -37.58949 -36.33762 -34.59549 -33.73251 -32.43217 -30.11624 -29.33769 -27.91023 -27.68349 -27.16068 -26.20083 -23.55699 -22.42169 -21.59571 -21.07991 -20.16293 -19.80114 -18.19863 -17.77678 -17.75633 -17.33238 -16.93886 -16.88858 -16.42675 -16.21629 -15.77715 -15.72653 -15.18246 -14.95721 -14.76662 -14.61590 -14.45842 -14.19175 -14.00208 -13.75317 -13.44515 -13.30891 -13.25629 -13.18052 -12.96129 -12.92672 -12.86782 -12.72272 -12.61364 -12.05943 -11.92590 -11.73724 -11.66362 -11.54354 -11.44334 -11.13768 -10.89186 -10.28879 -10.13383 -9.81270 -9.61249 -8.68615 -8.35132 -6.14094 1.25579 1.39044 1.43371 1.45618 1.55882 1.64395 2.00266 2.24519 2.28222 2.72149 2.98479 3.29036 3.31888 3.44296 3.54376 3.67175 3.85223 3.99084 4.08975 4.16806 4.22350 4.28286 4.29304 4.35500 4.38229 4.44600 4.48213 4.52873 4.56955 4.65630 4.71732 4.73023 4.78507 4.80825 4.98011 5.00978 5.05541 5.17249 5.23430 5.35323 5.40169 5.51867 5.55404 5.81932 6.02509 6.18776 6.55332 7.04551 7.05271 7.29829 8.74126 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002315 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.953546 B =12091.682755 C =12525.075108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.050 0.950 4 N -0.705 5.705 5 C 0.532 3.468 6 O -0.568 6.568 7 C -0.126 4.126 8 S -0.156 6.156 9 C -0.546 4.546 10 H 0.084 0.916 11 C 0.011 3.989 12 N -0.913 5.913 13 Si 1.001 2.999 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.106 4.106 18 C 0.009 3.991 19 N -0.442 5.442 20 C 0.013 3.987 21 H 0.120 0.880 22 C -0.106 4.106 23 C 0.097 3.903 24 N -0.625 5.625 25 C 0.090 3.910 26 C 0.475 3.525 27 O -0.567 6.567 28 C -0.007 4.007 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.415 0.585 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -4.829 34.312 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.068 0.932 4 N -0.358 5.358 5 C 0.318 3.682 6 O -0.446 6.446 7 C -0.278 4.278 8 S 0.071 5.929 9 C -0.694 4.694 10 H 0.102 0.898 11 C -0.194 4.194 12 N -0.549 5.549 13 Si 0.823 3.177 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.186 1.186 17 C -0.125 4.125 18 C -0.120 4.120 19 N -0.164 5.164 20 C -0.100 4.100 21 H 0.138 0.862 22 C -0.144 4.144 23 C -0.025 4.025 24 N -0.359 5.359 25 C -0.051 4.051 26 C 0.263 3.737 27 O -0.446 6.446 28 C -0.135 4.135 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.180 -3.098 34.010 34.151 hybrid contribution 0.851 -0.707 -1.882 2.183 sum 0.671 -3.805 32.128 32.359 Atomic orbital electron populations 1.22100 0.94363 1.03090 1.01775 1.20928 0.94515 0.96032 0.83579 0.93167 1.45724 1.67453 1.14403 1.08210 1.20106 0.76740 0.86556 0.84775 1.90685 1.50817 1.17942 1.85198 1.23356 1.05390 1.03110 0.95910 1.85641 1.86730 1.17648 1.02886 1.23172 1.50997 0.98449 0.96751 0.89834 1.26189 0.95062 0.97281 1.00821 1.70195 1.46838 1.15603 1.22302 0.84967 0.79092 0.77682 0.76007 1.18474 1.20333 1.18619 1.23178 0.95916 1.01021 0.92372 1.24071 0.93788 0.97602 0.96518 1.68821 1.01828 1.29452 1.16276 1.23172 1.00912 0.88003 0.97929 0.86183 1.22654 1.05264 0.94373 0.92131 1.22451 1.03621 0.94402 0.81981 1.48544 1.69789 1.07787 1.09796 1.21644 1.01441 0.79745 1.02312 1.22357 0.75671 0.89340 0.86377 1.90806 1.51660 1.85884 1.16285 1.24156 0.96995 1.02969 0.89399 0.90178 0.95228 0.90133 0.74802 0.87462 0.87014 0.91993 0.85059 0.92646 0.86546 0.88943 0.86016 0.87723 0.89118 0.92351 0.93369 0.87675 0.87897 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.45 71.98 0.68 -3.08 16 2 C 0.15 4.21 2.30 44.99 0.10 4.31 16 3 H 0.05 1.88 7.06 -2.39 -0.02 1.87 16 4 N -0.70 -20.58 4.93 -442.54 -2.18 -22.76 16 5 C 0.53 22.03 7.81 87.65 0.68 22.72 16 6 O -0.57 -29.56 15.52 -3.01 -0.05 -29.61 16 7 C -0.13 -5.42 6.16 71.23 0.44 -4.99 16 8 S -0.16 -9.19 20.57 -56.49 -1.16 -10.35 16 9 C -0.55 -32.38 9.50 67.95 0.65 -31.73 16 10 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 11 C 0.01 0.64 5.49 84.86 0.47 1.11 16 12 N -0.91 -58.01 13.22 21.65 0.29 -57.72 16 13 Si 1.00 44.86 29.55 68.60 2.03 46.88 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 17 C -0.11 -2.00 3.35 -10.15 -0.03 -2.03 16 18 C 0.01 0.16 6.65 86.40 0.57 0.74 16 19 N -0.44 -7.42 6.23 -882.51 -5.50 -12.92 16 20 C 0.01 0.20 3.11 44.91 0.14 0.33 16 21 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.11 -0.72 6.77 31.65 0.21 -0.50 16 23 C 0.10 0.63 7.35 86.83 0.64 1.27 16 24 N -0.62 -10.09 3.34 -842.57 -2.81 -12.90 16 25 C 0.09 1.36 10.96 127.77 1.40 2.76 16 26 C 0.48 10.92 5.52 87.86 0.49 11.41 16 27 O -0.57 -19.46 13.58 -3.03 -0.04 -19.50 16 28 C -0.01 -0.14 7.07 86.40 0.61 0.47 16 29 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.42 8.85 8.60 -92.71 -0.80 8.06 16 33 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 34 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 35 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.31 5.18 -2.38 -0.01 1.30 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 0.59 7.80 -2.39 -0.02 0.57 16 40 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 42 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.05 1.01 7.94 -2.38 -0.02 0.99 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 1.99 5.57 -2.39 -0.01 1.98 16 Total: -1.00 -89.90 391.96 -2.20 -92.10 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.18 Total: 23.99 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 7.05 Total: 2.79 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -10.21 Total: -106.31 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.09 Total: -49.11 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.16 Total: -10.35 kcal Total: -89.90 -2.20 -92.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.872 kcal (2) G-P(sol) polarization free energy of solvation -89.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds