Wall clock time and date at job start Wed Apr 1 2020 00:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46870 * 2 1 4 4 N 1.46488 * 109.47546 * 239.99655 * 2 1 3 5 5 C 1.34784 * 120.00064 * 85.00085 * 4 2 1 6 6 O 1.21278 * 119.99731 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00108 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.47022 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99948 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00119 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00226 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99654 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99971 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47452 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46812 * 120.00847 * 13 11 9 16 16 H 1.48500 * 109.47049 * 240.00136 * 13 11 9 17 17 C 1.53000 * 109.47021 * 119.99414 * 2 1 3 18 18 C 1.53517 * 114.17139 * 300.00676 * 17 2 1 19 19 N 1.47481 * 87.93204 * 220.33049 * 18 17 2 20 20 C 1.46897 * 111.00448 * 138.70280 * 19 18 17 21 21 H 1.09002 * 110.43506 * 54.29602 * 20 19 18 22 22 C 1.54630 * 110.60110 * 176.91472 * 20 19 18 23 23 C 1.54477 * 101.76569 * 143.52811 * 22 20 19 24 24 N 1.46762 * 105.47551 * 334.58863 * 23 22 20 25 25 C 1.46499 * 124.35170 * 197.03691 * 24 23 22 26 26 C 1.34421 * 111.30247 * 17.01270 * 24 23 22 27 27 O 1.21276 * 124.94354 * 179.63424 * 26 24 23 28 28 C 1.47480 * 87.83554 * 27.00880 * 19 18 17 29 29 H 1.09002 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47672 * 300.00407 * 1 2 3 31 31 H 1.09006 * 109.47195 * 60.00475 * 1 2 3 32 32 H 0.96996 * 120.00568 * 264.99944 * 4 2 1 33 33 H 1.09002 * 109.46895 * 299.99546 * 7 5 4 34 34 H 1.08994 * 109.47280 * 59.99452 * 7 5 4 35 35 H 0.97008 * 119.99862 * 179.97438 * 12 11 9 36 36 H 1.08996 * 113.37873 * 73.08145 * 17 2 1 37 37 H 1.08991 * 113.47815 * 105.56414 * 18 17 2 38 38 H 1.09005 * 113.52925 * 335.09748 * 18 17 2 39 39 H 1.08992 * 110.96955 * 261.65377 * 22 20 19 40 40 H 1.09005 * 110.96893 * 25.41288 * 22 20 19 41 41 H 1.08999 * 110.24696 * 215.58392 * 23 22 20 42 42 H 1.09001 * 110.31828 * 93.62405 * 23 22 20 43 43 H 1.09003 * 109.47436 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.46917 * 299.95062 * 25 24 23 45 45 H 1.08995 * 109.47140 * 59.94239 * 25 24 23 46 46 H 1.08995 * 113.47658 * 87.76077 * 28 19 18 47 47 H 1.09005 * 113.47336 * 218.23020 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6491 -0.7289 -3.5876 8 16 2.7095 0.4339 -4.9733 9 6 3.3129 -0.6313 -6.2405 10 1 3.5222 -1.6677 -6.0205 11 6 3.5182 -0.1387 -7.5219 12 7 3.2626 1.1243 -7.7901 13 14 4.1572 -1.2682 -8.8654 14 1 4.3634 -2.6302 -8.3107 15 1 3.1691 -1.3293 -9.9722 16 1 5.4468 -0.7431 -9.3817 17 6 2.0400 -0.7211 1.2493 18 6 1.5891 -0.0837 2.5711 19 7 2.9421 -0.3448 3.0967 20 6 3.4286 0.7936 3.8874 21 1 2.7146 1.0451 4.6717 22 6 4.8143 0.4797 4.4976 23 6 5.5159 1.8531 4.4093 24 7 4.8554 2.5600 3.3056 25 6 5.4081 3.7357 2.6286 26 6 3.6783 1.9896 2.9954 27 8 2.9264 2.3771 2.1263 28 6 3.4346 -0.2730 1.7084 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 2.2492 -1.6317 -1.1525 33 1 3.6483 -1.1213 -3.3984 34 1 1.9763 -1.5507 -3.8324 35 1 3.4064 1.4687 -8.6856 36 1 1.9096 -1.8025 1.2080 37 1 0.8087 -0.6480 3.0814 38 1 1.3542 0.9772 2.4848 39 1 4.7199 0.1557 5.5340 40 1 5.3420 -0.2667 3.9038 41 1 6.5760 1.7220 4.1925 42 1 5.3873 2.4044 5.3408 43 1 4.7202 4.0629 1.8489 44 1 5.5462 4.5398 3.3516 45 1 6.3688 3.4797 2.1821 46 1 3.6925 0.7372 1.3909 47 1 4.2181 -0.9980 1.4876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:08 Heat of formation + Delta-G solvation = -17.933904 kcal Electronic energy + Delta-G solvation = -27869.161424 eV Core-core repulsion = 23986.915358 eV Total energy + Delta-G solvation = -3882.246066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98343 -39.60632 -38.62893 -36.83214 -35.12134 -32.99611 -32.39224 -31.16441 -28.95155 -28.31809 -27.29316 -26.25312 -25.45136 -25.37366 -22.78581 -21.76260 -20.29304 -19.99485 -19.35436 -17.88087 -17.37031 -17.06657 -16.38930 -16.32454 -16.00315 -15.41752 -14.87559 -14.77991 -14.72172 -14.41887 -14.33673 -14.02795 -13.60623 -13.55009 -13.25263 -13.04151 -12.92981 -12.65977 -12.56966 -12.41202 -12.36795 -11.97950 -11.83565 -11.76889 -11.35646 -11.09126 -11.04491 -10.97811 -10.85954 -10.73677 -10.64689 -10.58929 -9.75980 -9.26574 -9.19619 -9.04224 -8.94477 -8.68872 -8.17173 -6.44908 -6.18131 -3.87862 2.13706 2.59220 3.10513 3.22259 3.24061 3.30753 3.36177 3.49896 3.76867 3.92283 4.01282 4.24013 4.26541 4.39265 4.51809 4.62639 4.76352 4.93228 4.98109 5.03534 5.10147 5.13817 5.16898 5.28029 5.28867 5.34508 5.42895 5.44448 5.45762 5.50983 5.53069 5.62028 5.68828 5.80355 5.86950 5.93752 5.96654 6.07106 6.20805 6.25857 6.37553 6.57579 6.69284 6.83425 7.63403 7.74779 7.86551 8.39119 8.76111 9.27196 10.89348 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.002344 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.167817 B =11940.025637 C =12658.119509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 H 0.095 0.905 4 N -0.733 5.733 5 C 0.531 3.469 6 O -0.516 6.516 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.115 4.115 18 C 0.002 3.998 19 N -0.449 5.449 20 C 0.014 3.986 21 H 0.117 0.883 22 C -0.118 4.118 23 C 0.100 3.900 24 N -0.621 5.621 25 C 0.089 3.911 26 C 0.493 3.507 27 O -0.515 6.515 28 C -0.015 4.015 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.267 0.733 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -2.813 30.114 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.113 0.887 4 N -0.387 5.387 5 C 0.317 3.683 6 O -0.390 6.390 7 C -0.303 4.303 8 S 0.165 5.835 9 C -0.682 4.682 10 H 0.091 0.909 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.134 4.134 18 C -0.127 4.127 19 N -0.170 5.170 20 C -0.099 4.099 21 H 0.135 0.865 22 C -0.156 4.156 23 C -0.024 4.024 24 N -0.357 5.357 25 C -0.052 4.052 26 C 0.279 3.721 27 O -0.391 6.391 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.366 -0.979 29.844 29.953 hybrid contribution 0.921 -1.729 -1.106 2.250 sum 3.287 -2.708 28.738 29.051 Atomic orbital electron populations 1.22128 0.95354 1.01789 1.02577 1.20848 0.94001 0.97594 0.82594 0.88698 1.46063 1.69336 1.13745 1.09557 1.20279 0.76975 0.87252 0.83774 1.90704 1.48211 1.15734 1.84370 1.23530 1.03572 1.04777 0.98455 1.85409 1.86266 1.13001 0.98774 1.22916 1.50704 0.98189 0.96377 0.90930 1.24998 0.95181 0.95537 0.97962 1.70037 1.45697 1.13225 1.21365 0.86118 0.78493 0.80146 0.80745 1.19633 1.20588 1.20602 1.22876 0.96020 1.00638 0.93880 1.23993 0.92487 1.02331 0.93852 1.69225 1.05346 1.32376 1.10081 1.23061 0.99227 0.89889 0.97711 0.86511 1.22587 0.93625 0.96429 1.02946 1.22155 0.97945 0.92537 0.89751 1.48238 1.21340 1.30432 1.35644 1.21634 0.99719 0.86212 0.97666 1.21638 0.81282 0.84999 0.84190 1.90787 1.49041 1.66498 1.32726 1.24359 0.98175 1.03275 0.88561 0.92689 0.91965 0.91733 0.77112 0.89396 0.89320 0.92288 0.87846 0.89546 0.88632 0.88619 0.89245 0.90048 0.90804 0.89539 0.91950 0.91783 0.88895 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.29 37.16 0.35 -1.68 16 2 C 0.16 2.09 2.47 -67.94 -0.17 1.93 16 3 H 0.10 1.64 7.33 -51.93 -0.38 1.25 16 4 N -0.73 -10.66 5.08 -53.81 -0.27 -10.93 16 5 C 0.53 10.51 7.81 -10.98 -0.09 10.42 16 6 O -0.52 -12.42 15.52 5.56 0.09 -12.33 16 7 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 8 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 9 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.61 13.22 55.49 0.73 -25.88 16 13 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.11 -1.19 3.64 -90.09 -0.33 -1.52 16 18 C 0.00 0.02 6.13 -7.54 -0.05 -0.02 16 19 N -0.45 -4.13 6.37 -236.59 -1.51 -5.64 16 20 C 0.01 0.11 3.05 -67.72 -0.21 -0.10 16 21 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.12 -0.61 6.84 -25.10 -0.17 -0.78 16 23 C 0.10 0.49 7.35 -3.12 -0.02 0.47 16 24 N -0.62 -5.26 3.33 -180.29 -0.60 -5.86 16 25 C 0.09 0.69 11.14 59.85 0.67 1.36 16 26 C 0.49 5.30 5.70 -10.86 -0.06 5.24 16 27 O -0.51 -7.55 13.47 5.56 0.07 -7.47 16 28 C -0.02 -0.17 6.87 -7.55 -0.05 -0.22 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 4.53 8.60 -40.82 -0.35 4.18 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.09 5.93 -51.93 -0.31 0.78 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.86 7.53 -51.93 -0.39 0.47 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.26 4.42 -51.93 -0.23 1.03 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -37.10 391.24 -10.05 -47.15 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.51 Total: 3.36 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.29 Total: -1.09 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.65 Total: -48.31 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.16 Total: -19.80 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.10 -10.05 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.217 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds