Wall clock time and date at job start Wed Apr 1 2020 00:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46870 * 2 1 4 4 N 1.46488 * 109.47546 * 239.99655 * 2 1 3 5 5 C 1.34784 * 120.00064 * 85.00085 * 4 2 1 6 6 O 1.21278 * 119.99731 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00108 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.47022 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99948 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00119 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00226 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99654 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99971 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47452 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46812 * 120.00847 * 13 11 9 16 16 H 1.48500 * 109.47049 * 240.00136 * 13 11 9 17 17 C 1.53000 * 109.47021 * 119.99414 * 2 1 3 18 18 C 1.53517 * 114.17139 * 300.00676 * 17 2 1 19 19 N 1.47481 * 87.93204 * 220.33049 * 18 17 2 20 20 C 1.46897 * 111.00448 * 138.70280 * 19 18 17 21 21 H 1.09002 * 110.43506 * 54.29602 * 20 19 18 22 22 C 1.54630 * 110.60110 * 176.91472 * 20 19 18 23 23 C 1.54477 * 101.76569 * 143.52811 * 22 20 19 24 24 N 1.46762 * 105.47551 * 334.58863 * 23 22 20 25 25 C 1.46499 * 124.35170 * 197.03691 * 24 23 22 26 26 C 1.34421 * 111.30247 * 17.01270 * 24 23 22 27 27 O 1.21276 * 124.94354 * 179.63424 * 26 24 23 28 28 C 1.47480 * 87.83554 * 27.00880 * 19 18 17 29 29 H 1.09002 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47672 * 300.00407 * 1 2 3 31 31 H 1.09006 * 109.47195 * 60.00475 * 1 2 3 32 32 H 0.96996 * 120.00568 * 264.99944 * 4 2 1 33 33 H 1.09002 * 109.46895 * 299.99546 * 7 5 4 34 34 H 1.08994 * 109.47280 * 59.99452 * 7 5 4 35 35 H 0.97008 * 119.99862 * 179.97438 * 12 11 9 36 36 H 1.08996 * 113.37873 * 73.08145 * 17 2 1 37 37 H 1.08991 * 113.47815 * 105.56414 * 18 17 2 38 38 H 1.09005 * 113.52925 * 335.09748 * 18 17 2 39 39 H 1.08992 * 110.96955 * 261.65377 * 22 20 19 40 40 H 1.09005 * 110.96893 * 25.41288 * 22 20 19 41 41 H 1.08999 * 110.24696 * 215.58392 * 23 22 20 42 42 H 1.09001 * 110.31828 * 93.62405 * 23 22 20 43 43 H 1.09003 * 109.47436 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.46917 * 299.95062 * 25 24 23 45 45 H 1.08995 * 109.47140 * 59.94239 * 25 24 23 46 46 H 1.08995 * 113.47658 * 87.76077 * 28 19 18 47 47 H 1.09005 * 113.47336 * 218.23020 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6491 -0.7289 -3.5876 8 16 2.7095 0.4339 -4.9733 9 6 3.3129 -0.6313 -6.2405 10 1 3.5222 -1.6677 -6.0205 11 6 3.5182 -0.1387 -7.5219 12 7 3.2626 1.1243 -7.7901 13 14 4.1572 -1.2682 -8.8654 14 1 4.3634 -2.6302 -8.3107 15 1 3.1691 -1.3293 -9.9722 16 1 5.4468 -0.7431 -9.3817 17 6 2.0400 -0.7211 1.2493 18 6 1.5891 -0.0837 2.5711 19 7 2.9421 -0.3448 3.0967 20 6 3.4286 0.7936 3.8874 21 1 2.7146 1.0451 4.6717 22 6 4.8143 0.4797 4.4976 23 6 5.5159 1.8531 4.4093 24 7 4.8554 2.5600 3.3056 25 6 5.4081 3.7357 2.6286 26 6 3.6783 1.9896 2.9954 27 8 2.9264 2.3771 2.1263 28 6 3.4346 -0.2730 1.7084 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 2.2492 -1.6317 -1.1525 33 1 3.6483 -1.1213 -3.3984 34 1 1.9763 -1.5507 -3.8324 35 1 3.4064 1.4687 -8.6856 36 1 1.9096 -1.8025 1.2080 37 1 0.8087 -0.6480 3.0814 38 1 1.3542 0.9772 2.4848 39 1 4.7199 0.1557 5.5340 40 1 5.3420 -0.2667 3.9038 41 1 6.5760 1.7220 4.1925 42 1 5.3873 2.4044 5.3408 43 1 4.7202 4.0629 1.8489 44 1 5.5462 4.5398 3.3516 45 1 6.3688 3.4797 2.1821 46 1 3.6925 0.7372 1.3909 47 1 4.2181 -0.9980 1.4876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:07 Heat of formation + Delta-G solvation = -47.908863 kcal Electronic energy + Delta-G solvation = -27870.461235 eV Core-core repulsion = 23986.915358 eV Total energy + Delta-G solvation = -3883.545877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73539 -40.81787 -39.74529 -37.60074 -36.38389 -34.59575 -33.79972 -32.42251 -30.12960 -29.38569 -27.95425 -27.68289 -27.03470 -26.14610 -23.73559 -22.45785 -21.62744 -21.02592 -20.17245 -19.78039 -18.31198 -17.82797 -17.69602 -17.33621 -16.96663 -16.89157 -16.44303 -16.25261 -15.97324 -15.51822 -15.10895 -15.06296 -14.74767 -14.67366 -14.38175 -14.31277 -14.08748 -13.80453 -13.46573 -13.29891 -13.17072 -13.14172 -13.04312 -12.91810 -12.81774 -12.62173 -12.57544 -12.03625 -11.89147 -11.84324 -11.69130 -11.49136 -11.42849 -11.16762 -10.89654 -10.27910 -10.16636 -9.86425 -9.63942 -8.68496 -8.35508 -6.14103 1.25976 1.37280 1.40943 1.46327 1.57866 1.62531 1.99086 2.24486 2.28094 2.77177 2.98518 3.26648 3.30286 3.36053 3.56105 3.71436 3.85182 3.96485 4.07495 4.16133 4.20723 4.27170 4.28339 4.33347 4.41257 4.44315 4.48585 4.53109 4.57650 4.64197 4.70643 4.74505 4.77900 4.79934 4.95063 4.98732 5.03767 5.18145 5.22078 5.29682 5.40995 5.48009 5.56328 5.82890 6.01304 6.19268 6.54192 7.01170 7.05448 7.28277 8.74172 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.002344 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.167817 B =11940.025637 C =12658.119509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.051 0.949 4 N -0.706 5.706 5 C 0.532 3.468 6 O -0.568 6.568 7 C -0.127 4.127 8 S -0.156 6.156 9 C -0.544 4.544 10 H 0.083 0.917 11 C 0.011 3.989 12 N -0.913 5.913 13 Si 1.002 2.998 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.273 1.273 17 C -0.105 4.105 18 C 0.006 3.994 19 N -0.436 5.436 20 C 0.013 3.987 21 H 0.131 0.869 22 C -0.108 4.108 23 C 0.096 3.904 24 N -0.624 5.624 25 C 0.087 3.913 26 C 0.478 3.522 27 O -0.567 6.567 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -6.238 32.495 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.069 0.931 4 N -0.360 5.360 5 C 0.318 3.682 6 O -0.446 6.446 7 C -0.278 4.278 8 S 0.071 5.929 9 C -0.691 4.691 10 H 0.102 0.898 11 C -0.194 4.194 12 N -0.549 5.549 13 Si 0.823 3.177 14 H -0.179 1.179 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.124 4.124 18 C -0.123 4.123 19 N -0.157 5.157 20 C -0.100 4.100 21 H 0.149 0.851 22 C -0.145 4.145 23 C -0.025 4.025 24 N -0.358 5.358 25 C -0.055 4.055 26 C 0.266 3.734 27 O -0.447 6.447 28 C -0.145 4.145 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.521 -4.454 32.303 32.798 hybrid contribution 0.588 -0.618 -1.694 1.897 sum 4.109 -5.073 30.609 31.298 Atomic orbital electron populations 1.22067 0.94365 1.03130 1.01653 1.20852 0.94690 0.95849 0.83330 0.93088 1.45807 1.67437 1.14477 1.08245 1.20136 0.76749 0.86585 0.84772 1.90696 1.50771 1.17980 1.85202 1.23359 1.05474 1.03102 0.95847 1.85650 1.86740 1.17577 1.02931 1.23230 1.50770 0.98429 0.96712 0.89843 1.26180 0.95100 0.97269 1.00824 1.70206 1.46926 1.15580 1.22216 0.84864 0.77810 0.78171 0.76830 1.17910 1.19896 1.19886 1.22879 0.95661 1.01619 0.92247 1.23934 0.93500 1.01297 0.93611 1.69229 1.04782 1.32724 1.08949 1.23215 1.01347 0.88246 0.97156 0.85106 1.22642 0.91305 0.96348 1.04254 1.22445 0.98436 0.92307 0.89352 1.48480 1.20941 1.30318 1.36072 1.21663 0.99138 0.87035 0.97670 1.22222 0.81464 0.85809 0.83937 1.90764 1.50837 1.68095 1.35044 1.24232 0.98650 1.01778 0.89886 0.90034 0.90472 0.95165 0.74694 0.87288 0.87058 0.92007 0.85024 0.87130 0.90899 0.85644 0.89767 0.88471 0.88456 0.92841 0.89571 0.90654 0.91965 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.29 71.98 0.67 -3.19 16 2 C 0.16 4.30 2.47 44.99 0.11 4.41 16 3 H 0.05 1.90 7.33 -2.39 -0.02 1.88 16 4 N -0.71 -20.06 5.08 -442.55 -2.25 -22.31 16 5 C 0.53 21.46 7.81 87.66 0.68 22.15 16 6 O -0.57 -29.01 15.52 -3.02 -0.05 -29.06 16 7 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 8 S -0.16 -9.04 20.57 -56.49 -1.16 -10.20 16 9 C -0.54 -31.81 9.50 67.95 0.65 -31.16 16 10 H 0.08 4.53 7.80 -2.91 -0.02 4.50 16 11 C 0.01 0.62 5.49 84.86 0.47 1.09 16 12 N -0.91 -57.38 13.22 21.65 0.29 -57.10 16 13 Si 1.00 44.41 29.55 68.60 2.03 46.43 16 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 C -0.10 -2.00 3.64 -10.45 -0.04 -2.04 16 18 C 0.01 0.10 6.13 83.58 0.51 0.61 16 19 N -0.44 -7.18 6.37 -902.44 -5.75 -12.93 16 20 C 0.01 0.19 3.05 44.91 0.14 0.32 16 21 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 22 C -0.11 -0.79 6.84 31.65 0.22 -0.58 16 23 C 0.10 0.70 7.35 86.83 0.64 1.34 16 24 N -0.62 -10.33 3.33 -842.90 -2.81 -13.14 16 25 C 0.09 1.39 11.14 127.77 1.42 2.81 16 26 C 0.48 10.56 5.70 87.90 0.50 11.06 16 27 O -0.57 -18.14 13.47 -3.02 -0.04 -18.18 16 28 C -0.02 -0.35 6.87 83.57 0.57 0.22 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.69 7.48 -2.39 -0.02 1.67 16 31 H 0.03 0.95 8.14 -2.38 -0.02 0.94 16 32 H 0.42 8.47 8.60 -92.71 -0.80 7.67 16 33 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 34 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 35 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.70 5.93 -2.38 -0.01 1.69 16 39 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16 44 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.77 4.42 -2.39 -0.01 1.76 16 47 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -87.53 391.24 -2.59 -90.11 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.18 Total: 24.18 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.98 Total: 2.18 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -10.52 Total: -105.47 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.09 Total: -47.24 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.16 Total: -10.20 kcal Total: -87.53 -2.59 -90.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.205 kcal (2) G-P(sol) polarization free energy of solvation -87.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds