Wall clock time and date at job start Wed Apr 1 2020 00:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47260 * 2 1 4 4 N 1.46504 * 109.47176 * 120.00046 * 2 1 3 5 5 C 1.34775 * 119.99561 * 275.00353 * 4 2 1 6 6 O 1.21282 * 120.00577 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99768 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47038 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99871 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00439 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99949 * 180.02562 * 9 8 7 12 12 N 1.31625 * 120.00229 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99759 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99573 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00179 * 13 11 9 17 17 C 1.52995 * 109.47355 * 239.99713 * 2 1 3 18 18 C 1.53937 * 113.73548 * 158.76682 * 17 2 1 19 19 N 1.48189 * 86.10490 * 221.96054 * 18 17 2 20 20 C 1.46900 * 111.07590 * 137.51558 * 19 18 17 21 21 H 1.08997 * 110.43141 * 321.66103 * 20 19 18 22 22 C 1.54638 * 110.48252 * 84.34021 * 20 19 18 23 23 C 1.54477 * 101.76516 * 143.47954 * 22 20 19 24 24 N 1.46767 * 105.47207 * 334.58311 * 23 22 20 25 25 C 1.46500 * 124.35044 * 197.04056 * 24 23 22 26 26 C 1.34422 * 111.30130 * 17.01362 * 24 23 22 27 27 O 1.21277 * 124.93910 * 179.62091 * 26 24 23 28 28 C 1.47959 * 90.79661 * 24.59804 * 19 18 17 29 29 H 1.08994 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47291 * 300.00378 * 1 2 3 31 31 H 1.09004 * 109.46932 * 60.00334 * 1 2 3 32 32 H 0.96993 * 120.00065 * 95.00094 * 4 2 1 33 33 H 1.09000 * 109.47235 * 59.99532 * 7 5 4 34 34 H 1.09005 * 109.46867 * 299.99572 * 7 5 4 35 35 H 0.97000 * 120.00071 * 359.97438 * 12 11 9 36 36 H 1.09004 * 112.94203 * 290.33491 * 17 2 1 37 37 H 1.09004 * 113.76050 * 336.23611 * 18 17 2 38 38 H 1.09003 * 113.76097 * 107.60547 * 18 17 2 39 39 H 1.08998 * 110.96607 * 261.60175 * 22 20 19 40 40 H 1.09001 * 110.96831 * 25.35752 * 22 20 19 41 41 H 1.08993 * 110.24255 * 215.58444 * 23 22 20 42 42 H 1.08999 * 110.32229 * 93.61929 * 23 22 20 43 43 H 1.08996 * 109.47633 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46582 * 300.00196 * 25 24 23 45 45 H 1.09001 * 109.47140 * 59.99658 * 25 24 23 46 46 H 1.09005 * 113.75828 * 221.08664 * 28 19 18 47 47 H 1.08998 * 113.86221 * 89.73963 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1586 2.4115 7 6 2.6499 -0.7285 3.5875 8 16 2.7112 0.4347 4.9729 9 6 3.3143 -0.6305 6.2402 10 1 3.5229 -1.6671 6.0205 11 6 3.5201 -0.1376 7.5214 12 7 3.2653 1.1256 7.7894 13 14 4.1601 -1.2668 8.8648 14 1 4.2919 -0.5035 10.1318 15 1 3.2096 -2.3907 9.0613 16 1 5.4869 -1.8039 8.4696 17 6 2.0401 -0.7213 -1.2491 18 6 3.4850 -0.3525 -1.6310 19 7 2.9996 -0.3203 -3.0308 20 6 3.5500 0.8335 -3.7544 21 1 3.5930 1.7061 -3.1027 22 6 4.9533 0.5023 -4.3135 23 6 4.9391 1.2518 -5.6642 24 7 3.5240 1.3563 -6.0392 25 6 3.0473 1.6653 -7.3896 26 6 2.7215 1.1314 -4.9845 27 8 1.5095 1.1624 -5.0149 28 6 1.6209 -0.0475 -2.5682 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2491 -1.6317 1.1526 33 1 3.6492 -1.1203 3.3979 34 1 1.9777 -1.5508 3.8325 35 1 2.9341 1.7123 7.0916 36 1 1.8528 -1.7949 -1.2261 37 1 3.8043 0.6194 -1.2546 38 1 4.2073 -1.1446 -1.4336 39 1 5.7349 0.8902 -3.6603 40 1 5.0698 -0.5709 -4.4641 41 1 5.4877 0.6846 -6.4160 42 1 5.3735 2.2451 -5.5506 43 1 1.9575 1.6820 -7.3953 44 1 3.4276 2.6402 -7.6948 45 1 3.4024 0.9034 -8.0834 46 1 0.8564 -0.5964 -3.1182 47 1 1.3919 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:10 Heat of formation + Delta-G solvation = -35.159940 kcal Electronic energy + Delta-G solvation = -27098.067545 eV Core-core repulsion = 23215.074502 eV Total energy + Delta-G solvation = -3882.993043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44595 -39.93562 -38.86421 -36.81918 -35.27607 -33.09180 -32.52850 -31.32809 -29.01422 -28.50429 -27.38317 -26.40549 -25.44895 -24.83820 -22.85390 -21.67403 -20.47975 -19.81105 -19.78200 -18.31320 -17.42431 -17.24342 -16.65178 -16.48939 -15.92238 -15.57703 -15.09577 -14.77141 -14.70721 -14.33921 -14.18283 -13.84969 -13.75978 -13.53509 -13.37958 -13.17378 -13.04122 -12.83110 -12.78576 -12.57512 -12.40926 -12.39529 -12.08709 -11.94002 -11.79229 -11.59702 -11.12822 -10.95841 -10.91981 -10.84761 -10.17658 -10.04158 -9.58105 -9.49738 -9.31154 -9.20520 -9.02133 -8.88829 -8.22312 -6.67059 -6.62289 -4.00025 2.11399 2.51684 2.91341 3.00933 3.34535 3.37688 3.50279 3.53483 3.58768 3.71698 3.99661 4.18818 4.25314 4.39308 4.46277 4.49372 4.77387 4.81554 4.87260 4.96254 4.97692 5.00849 5.09198 5.10590 5.21453 5.22569 5.24257 5.29529 5.32730 5.41408 5.48264 5.50056 5.59486 5.65755 5.77481 5.78982 5.85100 6.01468 6.02111 6.03931 6.21438 6.54327 6.60494 6.63268 7.65919 7.73441 7.91709 8.49881 8.54052 9.26971 10.81599 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.001861 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.423634 B =15045.802847 C =15506.197449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.086 0.914 4 N -0.731 5.731 5 C 0.532 3.468 6 O -0.519 6.519 7 C -0.131 4.131 8 S -0.116 6.116 9 C -0.608 4.608 10 H 0.065 0.935 11 C 0.035 3.965 12 N -0.884 5.884 13 Si 1.084 2.916 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.126 4.126 18 C 0.011 3.989 19 N -0.465 5.465 20 C 0.013 3.987 21 H 0.088 0.912 22 C -0.121 4.121 23 C 0.103 3.897 24 N -0.624 5.624 25 C 0.094 3.906 26 C 0.527 3.473 27 O -0.521 6.521 28 C 0.030 3.970 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.278 0.722 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -3.858 -30.662 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.104 0.896 4 N -0.385 5.385 5 C 0.318 3.682 6 O -0.393 6.393 7 C -0.282 4.282 8 S 0.110 5.890 9 C -0.756 4.756 10 H 0.084 0.916 11 C -0.175 4.175 12 N -0.518 5.518 13 Si 0.910 3.090 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.145 4.145 18 C -0.118 4.118 19 N -0.188 5.188 20 C -0.099 4.099 21 H 0.106 0.894 22 C -0.159 4.159 23 C -0.020 4.020 24 N -0.359 5.359 25 C -0.048 4.048 26 C 0.313 3.687 27 O -0.396 6.396 28 C -0.099 4.099 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.600 -2.398 -29.545 29.756 hybrid contribution 0.090 -1.178 -1.360 1.802 sum 2.690 -3.576 -30.905 31.227 Atomic orbital electron populations 1.22156 0.95078 1.02241 1.02708 1.20901 0.94323 0.96987 0.82996 0.89607 1.46036 1.69173 1.13925 1.09383 1.20273 0.76898 0.87236 0.83821 1.90698 1.48444 1.15782 1.84416 1.23323 1.03935 1.03876 0.97097 1.84815 1.86981 1.15609 1.01607 1.23706 1.54965 0.98914 0.97989 0.91631 1.26054 0.94752 0.98448 0.98291 1.70798 1.39176 1.04789 1.37036 0.83333 0.76202 0.74307 0.75175 1.20282 1.21142 1.21141 1.23357 0.95697 1.01538 0.93956 1.24120 0.97462 1.02267 0.87903 1.68684 1.04516 1.33379 1.12222 1.22954 0.95717 0.95772 0.95482 0.89411 1.22644 0.95419 1.02590 0.95285 1.22110 0.81803 1.00923 0.97179 1.48079 1.07593 1.70657 1.09591 1.21569 1.01452 1.00469 0.81300 1.20615 0.87224 0.75510 0.85329 1.90720 1.12658 1.51478 1.84765 1.23803 0.92205 1.00707 0.93145 0.92398 0.91694 0.91703 0.76806 0.89013 0.89006 0.91000 0.87673 0.90609 0.88724 0.89022 0.88678 0.90034 0.90880 0.89865 0.92005 0.91953 0.88770 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.31 37.16 0.35 -1.51 16 2 C 0.15 1.75 2.38 -67.93 -0.16 1.59 16 3 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 4 N -0.73 -9.31 5.08 -53.80 -0.27 -9.58 16 5 C 0.53 9.63 7.81 -10.98 -0.09 9.55 16 6 O -0.52 -11.50 15.52 5.56 0.09 -11.41 16 7 C -0.13 -2.62 6.16 36.01 0.22 -2.39 16 8 S -0.12 -3.13 19.60 -107.50 -2.11 -5.23 16 9 C -0.61 -17.50 9.50 30.94 0.29 -17.20 16 10 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 11 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 12 N -0.88 -27.52 13.67 55.49 0.76 -26.76 16 13 Si 1.08 24.89 29.92 -169.99 -5.09 19.80 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.13 -1.11 3.46 -89.69 -0.31 -1.42 16 18 C 0.01 0.09 7.47 -2.63 -0.02 0.07 16 19 N -0.46 -4.20 5.99 -230.05 -1.38 -5.58 16 20 C 0.01 0.11 2.32 -67.72 -0.16 -0.05 16 21 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 22 C -0.12 -0.64 6.79 -25.09 -0.17 -0.81 16 23 C 0.10 0.47 7.35 -3.12 -0.02 0.45 16 24 N -0.62 -4.68 3.33 -180.29 -0.60 -5.28 16 25 C 0.09 0.53 11.14 59.85 0.67 1.19 16 26 C 0.53 5.43 7.58 -10.86 -0.08 5.35 16 27 O -0.52 -7.15 15.51 5.56 0.09 -7.06 16 28 C 0.03 0.29 4.89 -2.76 -0.01 0.28 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 32 H 0.40 3.94 8.60 -40.82 -0.35 3.58 16 33 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 34 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 35 H 0.28 8.83 7.13 -40.82 -0.29 8.54 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.67 7.48 -51.93 -0.39 0.28 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.59 7.53 -51.93 -0.39 0.19 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -37.22 396.23 -9.83 -47.05 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.69 Total: 2.08 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.41 Total: -3.99 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.49 Total: -47.20 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.80 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.22 -9.83 -47.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.886 kcal (2) G-P(sol) polarization free energy of solvation -37.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds