Wall clock time and date at job start Wed Apr 1 2020 00:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47260 * 2 1 4 4 N 1.46504 * 109.47176 * 120.00046 * 2 1 3 5 5 C 1.34775 * 119.99561 * 275.00353 * 4 2 1 6 6 O 1.21282 * 120.00577 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99768 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47038 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99871 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00439 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99949 * 180.02562 * 9 8 7 12 12 N 1.31625 * 120.00229 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99759 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99573 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00179 * 13 11 9 17 17 C 1.52995 * 109.47355 * 239.99713 * 2 1 3 18 18 C 1.53937 * 113.73548 * 158.76682 * 17 2 1 19 19 N 1.48189 * 86.10490 * 221.96054 * 18 17 2 20 20 C 1.46900 * 111.07590 * 137.51558 * 19 18 17 21 21 H 1.08997 * 110.43141 * 321.66103 * 20 19 18 22 22 C 1.54638 * 110.48252 * 84.34021 * 20 19 18 23 23 C 1.54477 * 101.76516 * 143.47954 * 22 20 19 24 24 N 1.46767 * 105.47207 * 334.58311 * 23 22 20 25 25 C 1.46500 * 124.35044 * 197.04056 * 24 23 22 26 26 C 1.34422 * 111.30130 * 17.01362 * 24 23 22 27 27 O 1.21277 * 124.93910 * 179.62091 * 26 24 23 28 28 C 1.47959 * 90.79661 * 24.59804 * 19 18 17 29 29 H 1.08994 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47291 * 300.00378 * 1 2 3 31 31 H 1.09004 * 109.46932 * 60.00334 * 1 2 3 32 32 H 0.96993 * 120.00065 * 95.00094 * 4 2 1 33 33 H 1.09000 * 109.47235 * 59.99532 * 7 5 4 34 34 H 1.09005 * 109.46867 * 299.99572 * 7 5 4 35 35 H 0.97000 * 120.00071 * 359.97438 * 12 11 9 36 36 H 1.09004 * 112.94203 * 290.33491 * 17 2 1 37 37 H 1.09004 * 113.76050 * 336.23611 * 18 17 2 38 38 H 1.09003 * 113.76097 * 107.60547 * 18 17 2 39 39 H 1.08998 * 110.96607 * 261.60175 * 22 20 19 40 40 H 1.09001 * 110.96831 * 25.35752 * 22 20 19 41 41 H 1.08993 * 110.24255 * 215.58444 * 23 22 20 42 42 H 1.08999 * 110.32229 * 93.61929 * 23 22 20 43 43 H 1.08996 * 109.47633 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46582 * 300.00196 * 25 24 23 45 45 H 1.09001 * 109.47140 * 59.99658 * 25 24 23 46 46 H 1.09005 * 113.75828 * 221.08664 * 28 19 18 47 47 H 1.08998 * 113.86221 * 89.73963 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1586 2.4115 7 6 2.6499 -0.7285 3.5875 8 16 2.7112 0.4347 4.9729 9 6 3.3143 -0.6305 6.2402 10 1 3.5229 -1.6671 6.0205 11 6 3.5201 -0.1376 7.5214 12 7 3.2653 1.1256 7.7894 13 14 4.1601 -1.2668 8.8648 14 1 4.2919 -0.5035 10.1318 15 1 3.2096 -2.3907 9.0613 16 1 5.4869 -1.8039 8.4696 17 6 2.0401 -0.7213 -1.2491 18 6 3.4850 -0.3525 -1.6310 19 7 2.9996 -0.3203 -3.0308 20 6 3.5500 0.8335 -3.7544 21 1 3.5930 1.7061 -3.1027 22 6 4.9533 0.5023 -4.3135 23 6 4.9391 1.2518 -5.6642 24 7 3.5240 1.3563 -6.0392 25 6 3.0473 1.6653 -7.3896 26 6 2.7215 1.1314 -4.9845 27 8 1.5095 1.1624 -5.0149 28 6 1.6209 -0.0475 -2.5682 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2491 -1.6317 1.1526 33 1 3.6492 -1.1203 3.3979 34 1 1.9777 -1.5508 3.8325 35 1 2.9341 1.7123 7.0916 36 1 1.8528 -1.7949 -1.2261 37 1 3.8043 0.6194 -1.2546 38 1 4.2073 -1.1446 -1.4336 39 1 5.7349 0.8902 -3.6603 40 1 5.0698 -0.5709 -4.4641 41 1 5.4877 0.6846 -6.4160 42 1 5.3735 2.2451 -5.5506 43 1 1.9575 1.6820 -7.3953 44 1 3.4276 2.6402 -7.6948 45 1 3.4024 0.9034 -8.0834 46 1 0.8564 -0.5964 -3.1182 47 1 1.3919 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:09 Heat of formation + Delta-G solvation = -64.240861 kcal Electronic energy + Delta-G solvation = -27099.328588 eV Core-core repulsion = 23215.074502 eV Total energy + Delta-G solvation = -3884.254086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14768 -40.95792 -39.96708 -37.53509 -36.41133 -34.73474 -33.81068 -32.47280 -30.18903 -29.38052 -27.94793 -27.20161 -26.99497 -26.12767 -23.71168 -22.34785 -21.68420 -20.83832 -20.49083 -20.24858 -18.17372 -18.03299 -17.81088 -17.50677 -16.74251 -16.65182 -16.43139 -16.09220 -15.70010 -15.50143 -15.32892 -14.87356 -14.76933 -14.61674 -14.46629 -14.25938 -14.08201 -13.87305 -13.80346 -13.59977 -13.37823 -13.32855 -13.20572 -12.93203 -12.82348 -12.72152 -12.15708 -11.94869 -11.88221 -11.83215 -11.61805 -11.52587 -11.08373 -10.99799 -10.77820 -10.30736 -10.27285 -9.90646 -9.75955 -8.91143 -8.85331 -6.26099 1.21945 1.38350 1.53328 1.55043 1.61774 1.81826 1.98287 2.17307 2.36274 2.81986 3.03629 3.09040 3.15812 3.37587 3.52849 3.65961 3.84456 3.95879 3.99249 4.12772 4.19780 4.22006 4.29917 4.31336 4.39178 4.39728 4.40551 4.43540 4.59233 4.65374 4.69152 4.75240 4.79308 4.81644 4.89475 4.92279 5.09421 5.12477 5.16304 5.25770 5.48535 5.50834 5.65740 5.86132 5.99367 6.15978 6.48039 7.03771 7.07651 7.20539 8.52235 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.001861 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.423634 B =15045.802847 C =15506.197449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.703 5.703 5 C 0.535 3.465 6 O -0.567 6.567 7 C -0.109 4.109 8 S -0.197 6.197 9 C -0.613 4.613 10 H 0.076 0.924 11 C -0.020 4.020 12 N -0.914 5.914 13 Si 1.136 2.864 14 H -0.281 1.281 15 H -0.264 1.264 16 H -0.262 1.262 17 C -0.110 4.110 18 C 0.015 3.985 19 N -0.466 5.466 20 C 0.010 3.990 21 H 0.085 0.915 22 C -0.112 4.112 23 C 0.101 3.899 24 N -0.623 5.623 25 C 0.089 3.911 26 C 0.512 3.488 27 O -0.569 6.569 28 C 0.031 3.969 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.418 0.582 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.260 0.740 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -6.549 -32.136 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.081 0.919 4 N -0.356 5.356 5 C 0.321 3.679 6 O -0.445 6.445 7 C -0.261 4.261 8 S 0.029 5.971 9 C -0.761 4.761 10 H 0.094 0.906 11 C -0.223 4.223 12 N -0.549 5.549 13 Si 0.954 3.046 14 H -0.206 1.206 15 H -0.189 1.189 16 H -0.187 1.187 17 C -0.130 4.130 18 C -0.113 4.113 19 N -0.190 5.190 20 C -0.103 4.103 21 H 0.102 0.898 22 C -0.150 4.150 23 C -0.021 4.021 24 N -0.357 5.357 25 C -0.052 4.052 26 C 0.299 3.701 27 O -0.448 6.448 28 C -0.098 4.098 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.636 -5.133 -31.105 31.865 hybrid contribution -0.551 -0.336 -1.112 1.286 sum 4.084 -5.470 -32.217 32.932 Atomic orbital electron populations 1.22110 0.94872 1.03075 1.01724 1.20951 0.94421 0.96210 0.83293 0.91876 1.45761 1.67218 1.14625 1.08027 1.19994 0.76738 0.86559 0.84619 1.90695 1.50831 1.17813 1.85151 1.23234 1.05890 1.02198 0.94754 1.85077 1.87233 1.19486 1.05280 1.24041 1.54195 0.99352 0.98481 0.90597 1.27833 0.94154 0.98933 1.01374 1.70919 1.41398 1.05982 1.36603 0.82722 0.77099 0.72848 0.71949 1.20647 1.18851 1.18658 1.23282 0.95960 1.02052 0.91682 1.24131 0.97284 1.02530 0.87342 1.68685 1.03958 1.33783 1.12548 1.23037 0.97091 0.95450 0.94699 0.89750 1.22675 0.93760 1.02831 0.95776 1.22360 0.80194 1.02210 0.97353 1.48311 1.08661 1.69105 1.09596 1.21711 1.00382 1.02268 0.80868 1.21059 0.86985 0.75385 0.86694 1.90683 1.14618 1.53832 1.85651 1.23676 0.92771 0.99740 0.93597 0.90592 0.94714 0.90690 0.74506 0.86804 0.87147 0.92907 0.85659 0.91252 0.86960 0.87137 0.88661 0.87715 0.89247 0.91978 0.90076 0.89966 0.89584 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.31 71.98 0.67 -2.88 16 2 C 0.16 3.42 2.38 44.99 0.11 3.53 16 3 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 4 N -0.70 -16.55 5.08 -442.53 -2.25 -18.80 16 5 C 0.54 19.02 7.81 87.66 0.68 19.71 16 6 O -0.57 -25.72 15.52 -3.04 -0.05 -25.77 16 7 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 8 S -0.20 -10.81 19.60 -56.49 -1.11 -11.92 16 9 C -0.61 -35.15 9.50 67.96 0.65 -34.50 16 10 H 0.08 4.06 7.80 -2.91 -0.02 4.03 16 11 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 12 N -0.91 -58.12 13.67 21.65 0.30 -57.82 16 13 Si 1.14 48.98 29.92 68.60 2.05 51.04 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 C -0.11 -1.74 3.46 -10.15 -0.04 -1.77 16 18 C 0.02 0.22 7.47 86.37 0.65 0.87 16 19 N -0.47 -7.82 5.99 -881.75 -5.28 -13.10 16 20 C 0.01 0.15 2.32 44.91 0.10 0.25 16 21 H 0.08 1.35 7.66 -2.39 -0.02 1.33 16 22 C -0.11 -0.90 6.79 31.65 0.22 -0.69 16 23 C 0.10 0.64 7.35 86.83 0.64 1.28 16 24 N -0.62 -8.52 3.33 -842.91 -2.81 -11.33 16 25 C 0.09 0.89 11.14 127.77 1.42 2.32 16 26 C 0.51 10.51 7.58 87.90 0.67 11.18 16 27 O -0.57 -16.30 15.51 -3.02 -0.05 -16.34 16 28 C 0.03 0.60 4.89 86.41 0.42 1.02 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.52 7.52 -2.39 -0.02 1.50 16 32 H 0.42 6.80 8.60 -92.71 -0.80 6.00 16 33 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.26 17.22 7.13 -92.71 -0.66 16.56 16 36 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.13 7.48 -2.39 -0.02 1.11 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.09 0.80 8.09 -2.39 -0.02 0.78 16 41 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.06 0.90 7.53 -2.39 -0.02 0.88 16 44 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.06 1.37 7.70 -2.39 -0.02 1.35 16 Total: -1.00 -85.14 396.23 -1.82 -86.96 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.28 Total: 21.24 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 7.09 Total: -4.16 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -10.05 Total: -101.05 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.09 Total: -42.11 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.11 Total: -11.92 kcal Total: -85.14 -1.82 -86.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.722 kcal (2) G-P(sol) polarization free energy of solvation -85.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds