Wall clock time and date at job start Wed Apr 1 2020 00:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47015 * 2 1 4 4 N 1.46501 * 109.47218 * 119.99854 * 2 1 3 5 5 C 1.34783 * 119.99999 * 275.00168 * 4 2 1 6 6 O 1.21285 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99917 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.46956 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99714 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99467 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00202 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99700 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47123 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47174 * 120.00106 * 13 11 9 16 16 H 1.48500 * 109.47142 * 240.00090 * 13 11 9 17 17 C 1.52994 * 109.47337 * 240.00021 * 2 1 3 18 18 C 1.53510 * 114.17136 * 59.99654 * 17 2 1 19 19 N 1.47481 * 87.93275 * 139.67558 * 18 17 2 20 20 C 1.46897 * 111.00021 * 221.29891 * 19 18 17 21 21 H 1.09010 * 110.43286 * 302.54121 * 20 19 18 22 22 C 1.54625 * 110.48845 * 180.02562 * 20 19 18 23 23 C 1.54481 * 101.79703 * 265.96845 * 22 20 19 24 24 N 1.46825 * 105.44388 * 334.62720 * 23 22 20 25 25 C 1.46504 * 124.33333 * 197.00180 * 24 23 22 26 26 C 1.34414 * 111.31785 * 16.96546 * 24 23 22 27 27 O 1.21283 * 124.94790 * 179.58655 * 26 24 23 28 28 C 1.47477 * 87.83517 * 332.98889 * 19 18 17 29 29 H 1.09003 * 109.47021 * 299.99880 * 1 2 3 30 30 H 1.08995 * 109.47313 * 59.99621 * 1 2 3 31 31 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00327 * 94.99917 * 4 2 1 33 33 H 1.08997 * 109.46700 * 299.99267 * 7 5 4 34 34 H 1.08999 * 109.47460 * 59.99707 * 7 5 4 35 35 H 0.97001 * 120.00295 * 179.97438 * 12 11 9 36 36 H 1.09005 * 113.38152 * 286.91872 * 17 2 1 37 37 H 1.08994 * 113.47867 * 24.90959 * 18 17 2 38 38 H 1.09006 * 113.53255 * 254.44747 * 18 17 2 39 39 H 1.09002 * 110.96933 * 24.10435 * 22 20 19 40 40 H 1.09003 * 110.97286 * 147.83002 * 22 20 19 41 41 H 1.08998 * 110.24929 * 93.60353 * 23 22 20 42 42 H 1.09000 * 110.24296 * 215.60139 * 23 22 20 43 43 H 1.09000 * 109.46778 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47150 * 299.93458 * 25 24 23 45 45 H 1.08998 * 109.46928 * 59.93390 * 25 24 23 46 46 H 1.09003 * 113.47769 * 141.77290 * 28 19 18 47 47 H 1.08995 * 113.48051 * 272.24468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7284 3.5875 8 16 2.7114 0.4349 4.9729 9 6 3.3144 -0.6304 6.2403 10 1 3.5230 -1.6670 6.0205 11 6 3.5213 -0.1372 7.5211 12 7 3.2665 1.1260 7.7891 13 14 4.1599 -1.2667 8.8649 14 1 4.3651 -2.6290 8.3106 15 1 5.4505 -0.7429 9.3800 16 1 3.1724 -1.3260 9.9725 17 6 2.0400 -0.7212 -1.2492 18 6 1.5893 -0.0839 -2.5710 19 7 2.9423 -0.3452 -3.0966 20 6 3.4288 0.7931 -3.8873 21 1 2.7421 1.0091 -4.7059 22 6 4.8470 0.5064 -4.4328 23 6 5.7387 1.1501 -3.3479 24 7 4.9101 2.1916 -2.7280 25 6 5.4352 3.2861 -1.9078 26 6 3.6081 2.0127 -3.0102 27 8 2.7080 2.7247 -2.6182 28 6 3.4347 -0.2733 -1.7083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 1.9777 -1.5506 3.8326 34 1 3.6493 -1.1202 3.3979 35 1 3.4108 1.4706 8.6843 36 1 1.9097 -1.8026 -1.2078 37 1 1.3548 0.9769 -2.4839 38 1 0.8086 -0.6475 -3.0820 39 1 5.0291 -0.5661 -4.5016 40 1 4.9983 0.9885 -5.3987 41 1 6.0265 0.4057 -2.6056 42 1 6.6251 1.5930 -3.8022 43 1 4.6115 3.9162 -1.5723 44 1 5.9533 2.8746 -1.0415 45 1 6.1315 3.8812 -2.4987 46 1 4.2182 -0.9982 -1.4873 47 1 3.6927 0.7370 -1.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:12 Heat of formation + Delta-G solvation = -21.113874 kcal Electronic energy + Delta-G solvation = -28053.004326 eV Core-core repulsion = 24170.620366 eV Total energy + Delta-G solvation = -3882.383959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08908 -39.62750 -38.65076 -36.79885 -35.16629 -33.04964 -32.42204 -31.21904 -28.93619 -28.39466 -27.29559 -26.16607 -25.70842 -25.46613 -22.84111 -21.72181 -20.41888 -20.08425 -19.32126 -17.96750 -17.42770 -17.06373 -16.60142 -16.20783 -15.94348 -15.36276 -14.91450 -14.85628 -14.79932 -14.59853 -14.11998 -13.95637 -13.73639 -13.46084 -13.26074 -13.04759 -12.95201 -12.75944 -12.69845 -12.58582 -12.37105 -12.04673 -11.90096 -11.84018 -11.46097 -11.17584 -11.06871 -11.01027 -10.95560 -10.76090 -10.70376 -10.61560 -9.79269 -9.33583 -9.15919 -9.09447 -9.06878 -8.79636 -8.21227 -6.48656 -6.21020 -3.91222 2.13175 2.62564 3.04508 3.14529 3.21710 3.28379 3.33013 3.49075 3.69285 3.89515 3.94896 4.16550 4.21085 4.41160 4.44645 4.55511 4.81217 4.95820 4.98295 5.00136 5.06521 5.14007 5.14155 5.19418 5.22670 5.28254 5.34590 5.38418 5.43058 5.49183 5.51268 5.53351 5.62453 5.72443 5.75402 5.83644 5.91268 6.10016 6.13198 6.15932 6.28382 6.51172 6.69352 6.73249 7.60523 7.75973 7.77715 8.36149 8.67768 9.24356 10.86437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002436 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.111975 B =11493.027516 C =12140.131938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.087 0.913 4 N -0.733 5.733 5 C 0.532 3.468 6 O -0.516 6.516 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.119 4.119 18 C -0.002 4.002 19 N -0.444 5.444 20 C 0.014 3.986 21 H 0.116 0.884 22 C -0.122 4.122 23 C 0.098 3.902 24 N -0.621 5.621 25 C 0.089 3.911 26 C 0.493 3.507 27 O -0.521 6.521 28 C -0.007 4.007 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -4.639 -27.771 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.105 0.895 4 N -0.387 5.387 5 C 0.318 3.682 6 O -0.390 6.390 7 C -0.303 4.303 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.138 4.138 18 C -0.131 4.131 19 N -0.166 5.166 20 C -0.098 4.098 21 H 0.134 0.866 22 C -0.160 4.160 23 C -0.025 4.025 24 N -0.356 5.356 25 C -0.053 4.053 26 C 0.279 3.721 27 O -0.396 6.396 28 C -0.136 4.136 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.860 -2.622 -27.743 28.013 hybrid contribution 0.928 -1.733 1.221 2.314 sum 3.788 -4.354 -26.523 27.143 Atomic orbital electron populations 1.22136 0.95062 1.02019 1.02751 1.20814 0.94298 0.97079 0.82798 0.89468 1.46061 1.69389 1.13810 1.09452 1.20308 0.76912 0.87254 0.83767 1.90709 1.48222 1.15747 1.84360 1.23530 1.03576 1.04825 0.98415 1.85418 1.86312 1.12892 0.98802 1.22909 1.50793 0.98158 0.96401 0.90912 1.24997 0.95146 0.95534 0.97966 1.70028 1.45625 1.13215 1.21420 0.86120 0.78506 0.80138 0.80741 1.19620 1.20592 1.20565 1.22985 0.95848 1.01169 0.93827 1.24046 0.92809 1.02361 0.93864 1.69231 1.05143 1.32507 1.09763 1.23102 0.99329 0.89316 0.98102 0.86640 1.22619 0.92086 1.03285 0.98006 1.22185 0.94510 0.90141 0.95652 1.48292 1.07728 1.28255 1.51368 1.21642 1.00376 0.88847 0.94408 1.21521 0.82758 0.86459 0.81361 1.90766 1.43831 1.49840 1.55171 1.24151 0.98395 1.02158 0.88891 0.91609 0.91837 0.92473 0.76974 0.89269 0.89356 0.92254 0.87356 0.88817 0.88985 0.87927 0.89474 0.90735 0.90048 0.89664 0.91551 0.91896 0.89172 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.29 37.16 0.35 -1.60 16 2 C 0.16 1.97 2.47 -67.93 -0.17 1.80 16 3 H 0.09 1.41 7.33 -51.93 -0.38 1.03 16 4 N -0.73 -10.01 5.08 -53.81 -0.27 -10.28 16 5 C 0.53 10.10 7.81 -10.98 -0.09 10.01 16 6 O -0.52 -12.04 15.52 5.55 0.09 -11.95 16 7 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 8 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 9 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 10 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 13 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.12 -1.12 3.64 -90.09 -0.33 -1.45 16 18 C 0.00 -0.02 6.24 -7.55 -0.05 -0.06 16 19 N -0.44 -3.82 6.37 -236.61 -1.51 -5.33 16 20 C 0.01 0.11 3.20 -67.72 -0.22 -0.10 16 21 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 22 C -0.12 -0.64 6.82 -25.10 -0.17 -0.81 16 23 C 0.10 0.58 6.71 -3.09 -0.02 0.56 16 24 N -0.62 -5.66 2.80 -180.24 -0.50 -6.16 16 25 C 0.09 0.77 11.14 59.85 0.67 1.44 16 26 C 0.49 5.51 4.71 -10.86 -0.05 5.46 16 27 O -0.52 -7.92 15.71 5.55 0.09 -7.83 16 28 C -0.01 -0.07 6.13 -7.55 -0.05 -0.12 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.68 7.48 -51.93 -0.39 0.29 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 4.19 8.60 -40.82 -0.35 3.84 16 33 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.08 5.95 -51.93 -0.31 0.77 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.43 7.95 -51.93 -0.41 0.02 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.95 5.06 -51.93 -0.26 0.69 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -36.68 391.27 -9.95 -46.63 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.53 Total: 2.83 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 0.30 Total: -0.78 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.55 Total: -47.36 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.17 Total: -19.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.68 -9.95 -46.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.519 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds