Wall clock time and date at job start Wed Apr 1 2020 00:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47015 * 2 1 4 4 N 1.46501 * 109.47218 * 119.99854 * 2 1 3 5 5 C 1.34783 * 119.99999 * 275.00168 * 4 2 1 6 6 O 1.21285 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99917 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.46956 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99714 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99467 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00202 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99700 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47123 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47174 * 120.00106 * 13 11 9 16 16 H 1.48500 * 109.47142 * 240.00090 * 13 11 9 17 17 C 1.52994 * 109.47337 * 240.00021 * 2 1 3 18 18 C 1.53510 * 114.17136 * 59.99654 * 17 2 1 19 19 N 1.47481 * 87.93275 * 139.67558 * 18 17 2 20 20 C 1.46897 * 111.00021 * 221.29891 * 19 18 17 21 21 H 1.09010 * 110.43286 * 302.54121 * 20 19 18 22 22 C 1.54625 * 110.48845 * 180.02562 * 20 19 18 23 23 C 1.54481 * 101.79703 * 265.96845 * 22 20 19 24 24 N 1.46825 * 105.44388 * 334.62720 * 23 22 20 25 25 C 1.46504 * 124.33333 * 197.00180 * 24 23 22 26 26 C 1.34414 * 111.31785 * 16.96546 * 24 23 22 27 27 O 1.21283 * 124.94790 * 179.58655 * 26 24 23 28 28 C 1.47477 * 87.83517 * 332.98889 * 19 18 17 29 29 H 1.09003 * 109.47021 * 299.99880 * 1 2 3 30 30 H 1.08995 * 109.47313 * 59.99621 * 1 2 3 31 31 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00327 * 94.99917 * 4 2 1 33 33 H 1.08997 * 109.46700 * 299.99267 * 7 5 4 34 34 H 1.08999 * 109.47460 * 59.99707 * 7 5 4 35 35 H 0.97001 * 120.00295 * 179.97438 * 12 11 9 36 36 H 1.09005 * 113.38152 * 286.91872 * 17 2 1 37 37 H 1.08994 * 113.47867 * 24.90959 * 18 17 2 38 38 H 1.09006 * 113.53255 * 254.44747 * 18 17 2 39 39 H 1.09002 * 110.96933 * 24.10435 * 22 20 19 40 40 H 1.09003 * 110.97286 * 147.83002 * 22 20 19 41 41 H 1.08998 * 110.24929 * 93.60353 * 23 22 20 42 42 H 1.09000 * 110.24296 * 215.60139 * 23 22 20 43 43 H 1.09000 * 109.46778 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47150 * 299.93458 * 25 24 23 45 45 H 1.08998 * 109.46928 * 59.93390 * 25 24 23 46 46 H 1.09003 * 113.47769 * 141.77290 * 28 19 18 47 47 H 1.08995 * 113.48051 * 272.24468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7284 3.5875 8 16 2.7114 0.4349 4.9729 9 6 3.3144 -0.6304 6.2403 10 1 3.5230 -1.6670 6.0205 11 6 3.5213 -0.1372 7.5211 12 7 3.2665 1.1260 7.7891 13 14 4.1599 -1.2667 8.8649 14 1 4.3651 -2.6290 8.3106 15 1 5.4505 -0.7429 9.3800 16 1 3.1724 -1.3260 9.9725 17 6 2.0400 -0.7212 -1.2492 18 6 1.5893 -0.0839 -2.5710 19 7 2.9423 -0.3452 -3.0966 20 6 3.4288 0.7931 -3.8873 21 1 2.7421 1.0091 -4.7059 22 6 4.8470 0.5064 -4.4328 23 6 5.7387 1.1501 -3.3479 24 7 4.9101 2.1916 -2.7280 25 6 5.4352 3.2861 -1.9078 26 6 3.6081 2.0127 -3.0102 27 8 2.7080 2.7247 -2.6182 28 6 3.4347 -0.2733 -1.7083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 1.9777 -1.5506 3.8326 34 1 3.6493 -1.1202 3.3979 35 1 3.4108 1.4706 8.6843 36 1 1.9097 -1.8026 -1.2078 37 1 1.3548 0.9769 -2.4839 38 1 0.8086 -0.6475 -3.0820 39 1 5.0291 -0.5661 -4.5016 40 1 4.9983 0.9885 -5.3987 41 1 6.0265 0.4057 -2.6056 42 1 6.6251 1.5930 -3.8022 43 1 4.6115 3.9162 -1.5723 44 1 5.9533 2.8746 -1.0415 45 1 6.1315 3.8812 -2.4987 46 1 4.2182 -0.9982 -1.4873 47 1 3.6927 0.7370 -1.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:12 Heat of formation + Delta-G solvation = -50.499104 kcal Electronic energy + Delta-G solvation = -28054.278565 eV Core-core repulsion = 24170.620366 eV Total energy + Delta-G solvation = -3883.658199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83602 -40.84264 -39.73339 -37.63119 -36.37666 -34.59273 -33.85835 -32.44653 -30.11287 -29.40807 -28.01405 -27.67728 -26.91469 -26.45246 -23.79006 -22.42134 -21.65891 -21.12291 -20.15555 -19.77941 -18.43497 -17.83724 -17.76434 -17.42905 -16.89065 -16.81058 -16.45332 -16.20836 -15.94623 -15.63654 -15.26375 -14.87549 -14.72157 -14.58431 -14.50659 -14.32446 -14.05219 -13.75608 -13.60885 -13.49318 -13.30702 -13.16742 -13.11206 -12.92277 -12.90089 -12.62345 -12.53801 -12.10359 -12.03219 -11.81507 -11.68226 -11.48907 -11.48326 -11.16549 -10.91978 -10.27401 -10.20927 -9.85626 -9.81135 -8.68112 -8.35262 -6.13744 1.26021 1.31654 1.41240 1.46672 1.57912 1.60769 1.95587 2.22340 2.27431 2.77148 2.98964 3.20314 3.23298 3.32963 3.48016 3.64341 3.88820 3.94528 4.02845 4.12096 4.14220 4.24350 4.26740 4.29167 4.35035 4.40133 4.45351 4.49415 4.54908 4.63074 4.66268 4.71025 4.75559 4.76701 4.89053 4.97683 5.05497 5.10144 5.15641 5.25060 5.41474 5.43892 5.51305 5.77661 5.98054 6.19544 6.52323 6.96600 7.05934 7.26359 8.74293 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002436 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.111975 B =11493.027516 C =12140.131938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.044 0.956 4 N -0.704 5.704 5 C 0.533 3.467 6 O -0.569 6.569 7 C -0.127 4.127 8 S -0.156 6.156 9 C -0.543 4.543 10 H 0.084 0.916 11 C 0.011 3.989 12 N -0.913 5.913 13 Si 1.001 2.999 14 H -0.255 1.255 15 H -0.274 1.274 16 H -0.275 1.275 17 C -0.107 4.107 18 C -0.002 4.002 19 N -0.427 5.427 20 C 0.014 3.986 21 H 0.121 0.879 22 C -0.109 4.109 23 C 0.092 3.908 24 N -0.622 5.622 25 C 0.087 3.913 26 C 0.481 3.519 27 O -0.577 6.577 28 C -0.008 4.008 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.418 0.582 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.140 0.860 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -8.564 -29.664 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.062 0.938 4 N -0.358 5.358 5 C 0.319 3.681 6 O -0.447 6.447 7 C -0.278 4.278 8 S 0.071 5.929 9 C -0.691 4.691 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.549 5.549 13 Si 0.822 3.178 14 H -0.178 1.178 15 H -0.199 1.199 16 H -0.200 1.200 17 C -0.126 4.126 18 C -0.131 4.131 19 N -0.150 5.150 20 C -0.099 4.099 21 H 0.139 0.861 22 C -0.147 4.147 23 C -0.029 4.029 24 N -0.356 5.356 25 C -0.055 4.055 26 C 0.268 3.732 27 O -0.456 6.456 28 C -0.137 4.137 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.255 0.745 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.381 -6.616 -29.696 30.738 hybrid contribution 0.469 -0.485 1.686 1.816 sum 4.850 -7.101 -28.010 29.300 Atomic orbital electron populations 1.22084 0.94339 1.03351 1.01666 1.20817 0.94800 0.95401 0.83625 0.93785 1.45773 1.67460 1.14551 1.08053 1.20143 0.76672 0.86563 0.84761 1.90705 1.50785 1.18031 1.85196 1.23359 1.05567 1.03088 0.95777 1.85661 1.86772 1.17493 1.02997 1.23229 1.50720 0.98424 0.96738 0.89790 1.26165 0.95111 0.97226 1.00824 1.70198 1.46939 1.15564 1.22225 0.84879 0.77787 0.78235 0.76870 1.17845 1.19930 1.19997 1.22987 0.95616 1.02253 0.91794 1.24003 0.93958 1.01075 0.94061 1.69267 1.04483 1.32252 1.08960 1.23210 1.01553 0.87677 0.97439 0.86085 1.22677 0.89240 1.04390 0.98361 1.22463 0.94978 0.89502 0.95953 1.48509 1.07779 1.28619 1.50675 1.21654 0.99643 0.89027 0.95208 1.22143 0.82795 0.86885 0.81339 1.90729 1.45515 1.51942 1.57397 1.24086 0.98932 1.01026 0.89617 0.95079 0.90644 0.89758 0.74466 0.87067 0.87088 0.92026 0.84246 0.91568 0.86737 0.86345 0.87483 0.90358 0.87580 0.92709 0.91287 0.89222 0.87455 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.29 71.98 0.67 -3.06 16 2 C 0.16 4.00 2.47 44.99 0.11 4.11 16 3 H 0.04 1.53 7.33 -2.39 -0.02 1.52 16 4 N -0.70 -18.39 5.08 -442.53 -2.25 -20.64 16 5 C 0.53 20.44 7.81 87.66 0.68 21.12 16 6 O -0.57 -28.02 15.52 -3.05 -0.05 -28.06 16 7 C -0.13 -5.08 6.16 71.24 0.44 -4.65 16 8 S -0.16 -8.85 20.57 -56.49 -1.16 -10.01 16 9 C -0.54 -31.21 9.50 67.96 0.65 -30.57 16 10 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 11 C 0.01 0.64 5.49 84.86 0.47 1.11 16 12 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 13 Si 1.00 43.75 29.55 68.60 2.03 45.77 16 14 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C -0.11 -1.80 3.64 -10.45 -0.04 -1.84 16 18 C 0.00 -0.03 6.24 83.57 0.52 0.49 16 19 N -0.43 -6.38 6.37 -902.51 -5.75 -12.13 16 20 C 0.01 0.20 3.20 44.91 0.14 0.35 16 21 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 22 C -0.11 -0.79 6.82 31.65 0.22 -0.58 16 23 C 0.09 0.87 6.71 86.82 0.58 1.45 16 24 N -0.62 -11.22 2.80 -842.73 -2.36 -13.58 16 25 C 0.09 1.57 11.14 127.77 1.42 2.99 16 26 C 0.48 11.05 4.71 87.90 0.41 11.47 16 27 O -0.58 -19.08 15.71 -3.04 -0.05 -19.13 16 28 C -0.01 -0.14 6.13 83.57 0.51 0.38 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.61 7.48 -2.39 -0.02 1.59 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.42 7.48 8.60 -92.71 -0.80 6.68 16 33 H 0.11 3.98 8.14 -2.40 -0.02 3.97 16 34 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.57 5.95 -2.39 -0.01 1.56 16 38 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.12 0.57 8.08 -2.39 -0.02 0.55 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 0.71 7.95 -2.39 -0.02 0.69 16 42 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.05 1.23 5.06 -2.39 -0.01 1.22 16 Total: -1.00 -86.59 391.27 -2.33 -88.92 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.18 Total: 22.50 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.79 Total: 2.77 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -10.07 Total: -102.77 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.10 Total: -47.19 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -86.59 -2.33 -88.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.420 kcal (2) G-P(sol) polarization free energy of solvation -86.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds