Wall clock time and date at job start Wed Apr 1 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47839 * 110.99800 * 2 1 4 4 C 1.54913 * 104.79444 * 146.36669 * 3 2 1 5 5 C 1.55396 * 101.74130 * 323.01976 * 4 3 2 6 6 C 1.47442 * 111.00334 * 120.84561 * 2 1 3 7 7 H 1.09001 * 109.89055 * 117.16851 * 6 2 1 8 8 C 1.50704 * 109.88900 * 356.14969 * 6 2 1 9 9 O 1.21282 * 119.99501 * 307.63802 * 8 6 2 10 10 N 1.34769 * 120.00564 * 127.63746 * 8 6 2 11 11 C 1.47574 * 134.49721 * 180.02562 * 10 8 6 12 12 C 1.53946 * 86.11910 * 155.36155 * 11 10 8 13 13 C 1.53000 * 113.74355 * 137.95297 * 12 11 10 14 14 N 1.46505 * 109.47109 * 174.99818 * 13 12 11 15 15 C 1.34776 * 119.99561 * 180.27429 * 14 13 12 16 16 O 1.21277 * 120.00462 * 359.72955 * 15 14 13 17 17 C 1.50705 * 119.99547 * 179.72528 * 15 14 13 18 18 S 1.81001 * 109.46950 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00384 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00157 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99542 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46880 * 90.00003 * 23 21 19 25 25 H 1.48496 * 109.47408 * 209.99988 * 23 21 19 26 26 H 1.48495 * 109.47171 * 330.00308 * 23 21 19 27 27 C 1.47588 * 134.48988 * 0.02562 * 10 8 6 28 28 H 1.08999 * 109.46861 * 308.70711 * 1 2 3 29 29 H 1.08998 * 109.47548 * 68.71280 * 1 2 3 30 30 H 1.09004 * 109.46538 * 188.71362 * 1 2 3 31 31 H 1.08997 * 110.37468 * 265.19660 * 3 2 1 32 32 H 1.08997 * 110.37747 * 27.53870 * 3 2 1 33 33 H 1.08997 * 110.99029 * 81.02398 * 4 3 2 34 34 H 1.09000 * 110.98917 * 204.83347 * 4 3 2 35 35 H 1.08997 * 110.67828 * 277.17780 * 5 4 3 36 36 H 1.09004 * 110.84609 * 153.86193 * 5 4 3 37 37 H 1.08996 * 113.76854 * 41.05637 * 11 10 8 38 38 H 1.09003 * 113.87359 * 269.67364 * 11 10 8 39 39 H 1.08995 * 113.73960 * 269.15339 * 12 11 10 40 40 H 1.09001 * 109.47413 * 54.99869 * 13 12 11 41 41 H 1.09002 * 109.47123 * 295.00197 * 13 12 11 42 42 H 0.96995 * 119.99751 * 0.02562 * 14 13 12 43 43 H 1.09000 * 109.47297 * 300.00188 * 17 15 14 44 44 H 1.09000 * 109.47083 * 60.00401 * 17 15 14 45 45 H 0.97000 * 119.99757 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.76883 * 90.33573 * 27 10 8 47 47 H 1.09006 * 113.76808 * 318.94207 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9183 0.2788 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5802 0.8674 8 6 0.8613 -1.1293 2.0766 9 8 0.0368 -0.3156 2.4360 10 7 0.7612 -2.4121 2.4774 11 6 -0.1871 -3.1597 3.3256 12 6 0.2603 -4.4083 2.5441 13 6 0.4700 -5.6429 3.4231 14 7 0.7756 -6.7989 2.5765 15 6 0.9943 -8.0051 3.1365 16 8 0.9430 -8.1327 4.3414 17 6 1.3026 -9.1955 2.2652 18 16 1.5436 -10.6577 3.3046 19 6 1.8799 -11.8628 2.0641 20 1 1.8877 -11.5780 1.0224 21 6 2.1339 -13.1787 2.4255 22 7 2.1229 -13.5262 3.6951 23 14 2.4897 -14.4565 1.1104 24 1 3.9512 -14.5066 0.8515 25 1 2.0233 -15.7877 1.5745 26 1 1.7778 -14.0910 -0.1405 27 6 1.5563 -3.6335 2.2444 28 1 -0.3633 0.6426 0.8019 29 1 -0.3634 0.3731 -0.9575 30 1 -0.3632 -1.0159 0.1557 31 1 2.2147 1.7038 -1.0182 32 1 1.2890 2.0592 0.4724 33 1 4.1302 0.9282 0.2242 34 1 3.5496 2.2720 1.2639 35 1 2.3784 0.7704 2.7420 36 1 3.8020 -0.2337 2.3132 37 1 -1.2303 -2.8893 3.1620 38 1 0.0863 -3.1805 4.3806 39 1 -0.3447 -4.6133 1.6609 40 1 -0.4371 -5.8407 3.9943 41 1 1.2990 -5.4648 4.1080 42 1 0.8170 -6.6968 1.6128 43 1 0.4724 -9.3696 1.5807 44 1 2.2104 -9.0021 1.6937 45 1 2.3007 -14.4457 3.9478 46 1 2.3436 -3.7925 2.9813 47 1 1.9051 -3.7413 1.2173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759232663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:30 Heat of formation + Delta-G solvation = -21.886481 kcal Electronic energy + Delta-G solvation = -26620.880565 eV Core-core repulsion = 22738.463103 eV Total energy + Delta-G solvation = -3882.417462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32790 -39.85166 -38.89583 -37.40232 -34.56035 -32.55748 -32.44894 -31.46648 -30.04789 -28.82354 -26.74010 -26.14055 -25.77802 -25.36259 -22.46578 -21.76095 -21.01047 -20.27348 -19.21236 -17.99877 -17.78936 -16.81334 -16.61797 -16.31946 -16.18762 -15.63356 -15.40369 -15.15997 -14.82385 -14.57997 -14.38159 -14.01233 -13.88190 -13.69443 -13.22646 -13.14438 -13.12528 -12.78300 -12.64509 -12.41295 -12.24745 -11.97166 -11.85464 -11.75421 -11.72752 -11.60421 -11.30603 -11.21714 -11.08129 -11.04485 -10.78162 -10.33985 -9.83989 -9.47566 -9.25137 -9.09401 -8.97423 -8.65965 -8.26496 -6.52658 -6.23832 -3.94626 2.07042 2.29937 2.96158 3.03869 3.20871 3.25791 3.29491 3.54293 3.58250 3.80945 3.92980 4.07469 4.18375 4.18718 4.39120 4.54808 4.58232 4.76968 4.79044 4.91831 4.92591 5.00194 5.03842 5.11316 5.11843 5.15008 5.17642 5.25412 5.26356 5.36346 5.38393 5.43190 5.52397 5.57054 5.65132 5.68300 5.69439 5.82783 5.85893 6.10499 6.34980 6.46156 6.51311 7.19872 7.57440 7.62180 7.67533 8.33055 8.54600 9.21619 10.83563 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.001665 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.182823 B =16812.395367 C =17368.593671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.510 5.510 3 C 0.037 3.963 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.057 3.943 7 H 0.102 0.898 8 C 0.527 3.473 9 O -0.540 6.540 10 N -0.642 5.642 11 C 0.116 3.884 12 C -0.133 4.133 13 C 0.131 3.869 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.103 3.897 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.094 0.906 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 29.271 -7.403 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.234 5.234 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.054 4.054 7 H 0.120 0.880 8 C 0.316 3.684 9 O -0.417 6.417 10 N -0.378 5.378 11 C -0.007 4.007 12 C -0.153 4.153 13 C 0.006 3.994 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.019 4.019 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.475 29.314 -5.574 29.843 hybrid contribution 0.011 -0.342 -1.993 2.022 sum -0.464 28.972 -7.567 29.947 Atomic orbital electron populations 1.22937 0.86868 1.02358 1.02068 1.64069 1.09183 1.14911 1.35268 1.23171 0.95726 0.89219 1.00888 1.22747 0.97788 0.99357 0.96550 1.22795 0.99063 0.96468 0.98423 1.22597 0.93965 0.99287 0.89572 0.88035 1.20786 0.86798 0.79939 0.80832 1.90685 1.43238 1.50265 1.57496 1.50106 1.30175 1.07370 1.50142 1.23149 0.95441 0.86367 0.95765 1.23422 0.97733 0.93735 1.00386 1.21207 1.01967 0.83403 0.92829 1.45979 1.74718 1.08431 1.10302 1.20320 0.75618 0.83303 0.88936 1.90711 1.49126 1.84373 1.14854 1.23533 1.04505 0.99040 1.03368 1.85406 1.92065 0.96227 1.09710 1.22864 1.55859 0.95488 0.94209 0.90905 1.24996 0.94741 0.97742 0.96116 1.70018 1.45922 1.18851 1.15465 0.86165 0.78660 0.79883 0.80776 1.20267 1.20753 1.19696 1.23474 0.95276 0.80215 1.02955 0.91800 0.91614 0.92036 0.89598 0.92937 0.90176 0.90249 0.90494 0.89851 0.89592 0.89011 0.87124 0.90800 0.90968 0.76728 0.89194 0.89169 0.92170 0.88756 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.19 60.07 0.49 0.54 16 2 N -0.51 -4.40 5.44 -232.95 -1.27 -5.66 16 3 C 0.04 0.26 6.73 -2.30 -0.02 0.25 16 4 C -0.13 -0.71 7.08 -24.45 -0.17 -0.88 16 5 C -0.13 -0.88 6.47 -24.77 -0.16 -1.04 16 6 C 0.06 0.46 3.77 -67.88 -0.26 0.20 16 7 H 0.10 0.71 7.22 -51.93 -0.38 0.34 16 8 C 0.53 5.25 5.16 -10.99 -0.06 5.19 16 9 O -0.54 -7.09 14.51 5.56 0.08 -7.01 16 10 N -0.64 -5.20 3.61 -178.36 -0.64 -5.84 16 11 C 0.12 0.82 8.40 -2.98 -0.03 0.79 16 12 C -0.13 -0.82 3.94 -89.70 -0.35 -1.17 16 13 C 0.13 1.18 5.53 -4.04 -0.02 1.15 16 14 N -0.74 -8.25 5.56 -60.29 -0.33 -8.58 16 15 C 0.53 9.13 7.85 -10.98 -0.09 9.04 16 16 O -0.52 -11.09 15.86 5.56 0.09 -11.00 16 17 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 C 0.10 0.60 7.75 -2.97 -0.02 0.57 16 28 H 0.06 0.70 5.80 -51.93 -0.30 0.40 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 6.96 -51.93 -0.36 0.25 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.39 7.63 -51.93 -0.40 0.00 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 42 H 0.40 3.26 8.47 -40.82 -0.35 2.92 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 0.50 7.89 -51.93 -0.41 0.09 16 47 H 0.09 0.41 7.89 -51.93 -0.41 0.00 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -36.27 394.71 -10.49 -46.76 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.60 Total: -1.02 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.26 Total: -0.75 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -1.51 Total: -45.16 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.27 -10.49 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759232663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.871 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds