Wall clock time and date at job start Wed Apr 1 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47839 * 110.99800 * 2 1 4 4 C 1.54913 * 104.79444 * 146.36669 * 3 2 1 5 5 C 1.55396 * 101.74130 * 323.01976 * 4 3 2 6 6 C 1.47442 * 111.00334 * 120.84561 * 2 1 3 7 7 H 1.09001 * 109.89055 * 117.16851 * 6 2 1 8 8 C 1.50704 * 109.88900 * 356.14969 * 6 2 1 9 9 O 1.21282 * 119.99501 * 307.63802 * 8 6 2 10 10 N 1.34769 * 120.00564 * 127.63746 * 8 6 2 11 11 C 1.47574 * 134.49721 * 180.02562 * 10 8 6 12 12 C 1.53946 * 86.11910 * 155.36155 * 11 10 8 13 13 C 1.53000 * 113.74355 * 137.95297 * 12 11 10 14 14 N 1.46505 * 109.47109 * 174.99818 * 13 12 11 15 15 C 1.34776 * 119.99561 * 180.27429 * 14 13 12 16 16 O 1.21277 * 120.00462 * 359.72955 * 15 14 13 17 17 C 1.50705 * 119.99547 * 179.72528 * 15 14 13 18 18 S 1.81001 * 109.46950 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00384 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00157 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99542 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46880 * 90.00003 * 23 21 19 25 25 H 1.48496 * 109.47408 * 209.99988 * 23 21 19 26 26 H 1.48495 * 109.47171 * 330.00308 * 23 21 19 27 27 C 1.47588 * 134.48988 * 0.02562 * 10 8 6 28 28 H 1.08999 * 109.46861 * 308.70711 * 1 2 3 29 29 H 1.08998 * 109.47548 * 68.71280 * 1 2 3 30 30 H 1.09004 * 109.46538 * 188.71362 * 1 2 3 31 31 H 1.08997 * 110.37468 * 265.19660 * 3 2 1 32 32 H 1.08997 * 110.37747 * 27.53870 * 3 2 1 33 33 H 1.08997 * 110.99029 * 81.02398 * 4 3 2 34 34 H 1.09000 * 110.98917 * 204.83347 * 4 3 2 35 35 H 1.08997 * 110.67828 * 277.17780 * 5 4 3 36 36 H 1.09004 * 110.84609 * 153.86193 * 5 4 3 37 37 H 1.08996 * 113.76854 * 41.05637 * 11 10 8 38 38 H 1.09003 * 113.87359 * 269.67364 * 11 10 8 39 39 H 1.08995 * 113.73960 * 269.15339 * 12 11 10 40 40 H 1.09001 * 109.47413 * 54.99869 * 13 12 11 41 41 H 1.09002 * 109.47123 * 295.00197 * 13 12 11 42 42 H 0.96995 * 119.99751 * 0.02562 * 14 13 12 43 43 H 1.09000 * 109.47297 * 300.00188 * 17 15 14 44 44 H 1.09000 * 109.47083 * 60.00401 * 17 15 14 45 45 H 0.97000 * 119.99757 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.76883 * 90.33573 * 27 10 8 47 47 H 1.09006 * 113.76808 * 318.94207 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9183 0.2788 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5802 0.8674 8 6 0.8613 -1.1293 2.0766 9 8 0.0368 -0.3156 2.4360 10 7 0.7612 -2.4121 2.4774 11 6 -0.1871 -3.1597 3.3256 12 6 0.2603 -4.4083 2.5441 13 6 0.4700 -5.6429 3.4231 14 7 0.7756 -6.7989 2.5765 15 6 0.9943 -8.0051 3.1365 16 8 0.9430 -8.1327 4.3414 17 6 1.3026 -9.1955 2.2652 18 16 1.5436 -10.6577 3.3046 19 6 1.8799 -11.8628 2.0641 20 1 1.8877 -11.5780 1.0224 21 6 2.1339 -13.1787 2.4255 22 7 2.1229 -13.5262 3.6951 23 14 2.4897 -14.4565 1.1104 24 1 3.9512 -14.5066 0.8515 25 1 2.0233 -15.7877 1.5745 26 1 1.7778 -14.0910 -0.1405 27 6 1.5563 -3.6335 2.2444 28 1 -0.3633 0.6426 0.8019 29 1 -0.3634 0.3731 -0.9575 30 1 -0.3632 -1.0159 0.1557 31 1 2.2147 1.7038 -1.0182 32 1 1.2890 2.0592 0.4724 33 1 4.1302 0.9282 0.2242 34 1 3.5496 2.2720 1.2639 35 1 2.3784 0.7704 2.7420 36 1 3.8020 -0.2337 2.3132 37 1 -1.2303 -2.8893 3.1620 38 1 0.0863 -3.1805 4.3806 39 1 -0.3447 -4.6133 1.6609 40 1 -0.4371 -5.8407 3.9943 41 1 1.2990 -5.4648 4.1080 42 1 0.8170 -6.6968 1.6128 43 1 0.4724 -9.3696 1.5807 44 1 2.2104 -9.0021 1.6937 45 1 2.3007 -14.4457 3.9478 46 1 2.3436 -3.7925 2.9813 47 1 1.9051 -3.7413 1.2173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759232663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:30 Heat of formation + Delta-G solvation = -49.809186 kcal Electronic energy + Delta-G solvation = -26622.091384 eV Core-core repulsion = 22738.463103 eV Total energy + Delta-G solvation = -3883.628281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99166 -40.73824 -39.93913 -38.13190 -35.67085 -34.55632 -33.14814 -32.34427 -31.05878 -29.75739 -27.68468 -27.27326 -26.81084 -26.42553 -23.12774 -22.27219 -21.89627 -21.32368 -19.85383 -19.76737 -18.54358 -17.76111 -17.60836 -17.26416 -16.94540 -16.85301 -16.57525 -16.29601 -15.98694 -15.83175 -15.30448 -15.05935 -14.73855 -14.57597 -14.45937 -14.23818 -13.85094 -13.66869 -13.60315 -13.27183 -13.13538 -13.06706 -12.87805 -12.83502 -12.59774 -12.56738 -12.37350 -12.34048 -12.11629 -11.86248 -11.79073 -11.69472 -11.11842 -11.08046 -10.88246 -10.23300 -10.06311 -9.90751 -9.33129 -8.63035 -8.32302 -6.09602 1.30128 1.36418 1.44249 1.49896 1.59559 1.67429 1.69436 2.27804 2.33096 2.93195 3.02027 3.17411 3.28742 3.38310 3.54782 3.66085 3.78623 3.94148 4.07555 4.09745 4.19523 4.23002 4.31830 4.36125 4.39056 4.47260 4.51619 4.55297 4.57592 4.57823 4.68375 4.74105 4.78825 4.82840 4.83701 4.94089 4.96912 5.02858 5.19533 5.21810 5.44750 5.48423 5.73752 5.81964 6.22420 6.53620 6.58330 6.96651 7.09441 7.31013 8.76728 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.001665 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.182823 B =16812.395367 C =17368.593671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.515 5.515 3 C 0.032 3.968 4 C -0.119 4.119 5 C -0.128 4.128 6 C 0.056 3.944 7 H 0.118 0.882 8 C 0.522 3.478 9 O -0.581 6.581 10 N -0.644 5.644 11 C 0.109 3.891 12 C -0.113 4.113 13 C 0.132 3.868 14 N -0.710 5.710 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.258 1.258 27 C 0.106 3.894 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.270 0.730 46 H 0.104 0.896 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 29.865 -10.127 31.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.055 4.055 7 H 0.136 0.864 8 C 0.312 3.688 9 O -0.461 6.461 10 N -0.379 5.379 11 C -0.014 4.014 12 C -0.132 4.132 13 C 0.008 3.992 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.016 4.016 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.639 29.936 -8.349 31.085 hybrid contribution -0.380 -0.393 -1.139 1.264 sum 0.258 29.543 -9.488 31.030 Atomic orbital electron populations 1.22784 0.87608 1.01245 1.01696 1.64144 1.08481 1.15858 1.35466 1.23269 0.96142 0.88247 1.01832 1.22760 0.97301 0.99686 0.95967 1.22811 0.99166 0.96586 0.98143 1.22731 0.93480 1.00074 0.89244 0.86433 1.21160 0.86778 0.80082 0.80802 1.90669 1.44800 1.51535 1.59133 1.50206 1.30629 1.07415 1.49651 1.23251 0.95280 0.86633 0.96227 1.23239 0.98321 0.91720 0.99950 1.21297 1.01551 0.83304 0.93026 1.45673 1.72175 1.06989 1.11573 1.20012 0.75669 0.84403 0.87895 1.90704 1.51839 1.85234 1.16770 1.23384 1.06348 0.96106 1.02320 1.85590 1.92498 1.00915 1.13746 1.23213 1.55525 0.95987 0.94552 0.89817 1.26115 0.94307 1.00252 0.98533 1.70186 1.47232 1.19420 1.17958 0.84970 0.78834 0.76473 0.77814 1.19324 1.20512 1.18167 1.23657 0.94989 0.78393 1.04511 0.94028 0.90610 0.92977 0.88347 0.94116 0.88847 0.89141 0.92514 0.88063 0.90059 0.88523 0.85755 0.91618 0.91122 0.74433 0.87251 0.86945 0.92074 0.87827 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 8.19 127.69 1.05 1.32 16 2 N -0.51 -8.24 5.44 -890.92 -4.85 -13.09 16 3 C 0.03 0.41 6.73 86.78 0.58 1.00 16 4 C -0.12 -1.10 7.08 32.07 0.23 -0.88 16 5 C -0.13 -1.56 6.47 31.86 0.21 -1.35 16 6 C 0.06 0.81 3.77 44.51 0.17 0.98 16 7 H 0.12 1.31 7.22 -2.39 -0.02 1.29 16 8 C 0.52 10.03 5.16 87.66 0.45 10.48 16 9 O -0.58 -15.66 14.51 -3.04 -0.04 -15.70 16 10 N -0.64 -9.39 3.61 -836.59 -3.02 -12.41 16 11 C 0.11 1.40 8.40 86.48 0.73 2.13 16 12 C -0.11 -1.08 3.94 -10.14 -0.04 -1.12 16 13 C 0.13 2.10 5.53 86.38 0.48 2.58 16 14 N -0.71 -13.88 5.56 -463.04 -2.57 -16.45 16 15 C 0.53 17.60 7.85 87.66 0.69 18.29 16 16 O -0.57 -24.47 15.86 -3.02 -0.05 -24.52 16 17 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 18 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 19 C -0.54 -30.32 9.50 67.95 0.65 -29.67 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -55.23 13.22 21.65 0.29 -54.94 16 23 Si 1.00 42.73 29.55 68.60 2.03 44.76 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 C 0.11 0.90 7.75 86.48 0.67 1.57 16 28 H 0.04 0.96 5.80 -2.39 -0.01 0.94 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.02 6.96 -2.38 -0.02 1.01 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.61 7.63 -2.39 -0.02 0.59 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.93 7.70 -2.39 -0.02 0.91 16 36 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.22 7.84 -2.39 -0.02 1.20 16 42 H 0.42 5.15 8.47 -92.71 -0.79 4.36 16 43 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 44 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.10 0.76 7.89 -2.38 -0.02 0.74 16 47 H 0.11 0.56 7.89 -2.38 -0.02 0.54 16 Total: -1.00 -82.14 394.71 -2.44 -84.58 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.19 Total: 15.07 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.76 Total: 2.17 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -10.15 Total: -96.88 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.22 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -82.14 -2.44 -84.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759232663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.769 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds