Wall clock time and date at job start Wed Apr 1 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47438 * 110.99968 * 2 1 4 4 C 1.54325 * 107.37331 * 236.66389 * 3 2 1 5 5 C 1.55398 * 102.89575 * 337.89540 * 4 3 2 6 6 C 1.47850 * 111.00058 * 239.16061 * 2 1 3 7 7 H 1.09006 * 110.36775 * 27.53157 * 6 2 1 8 8 C 1.50700 * 110.37551 * 265.19551 * 6 2 1 9 9 O 1.21282 * 119.99639 * 341.44941 * 8 6 2 10 10 N 1.34773 * 120.00217 * 161.45238 * 8 6 2 11 11 C 1.47066 * 136.05783 * 354.63114 * 10 8 6 12 12 C 1.53237 * 88.08521 * 207.20676 * 11 10 8 13 13 C 1.47062 * 136.05655 * 175.01088 * 10 8 6 14 14 H 1.08998 * 113.46753 * 267.61800 * 13 10 8 15 15 C 1.53006 * 113.47309 * 38.06276 * 13 10 8 16 16 N 1.46490 * 109.47524 * 184.10543 * 15 13 10 17 17 C 1.34779 * 120.00060 * 184.97818 * 16 15 13 18 18 O 1.21278 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99831 * 179.97438 * 17 16 15 20 20 S 1.81003 * 109.46823 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99847 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99905 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99956 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00024 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47553 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47536 * 120.00189 * 25 23 21 28 28 H 1.48504 * 109.47523 * 240.00134 * 25 23 21 29 29 H 1.08998 * 109.47200 * 60.12349 * 1 2 3 30 30 H 1.09005 * 109.47221 * 180.12475 * 1 2 3 31 31 H 1.08997 * 109.46788 * 300.11839 * 1 2 3 32 32 H 1.08995 * 109.89109 * 356.15284 * 3 2 1 33 33 H 1.09001 * 109.88967 * 117.17708 * 3 2 1 34 34 H 1.08998 * 110.70312 * 96.18090 * 4 3 2 35 35 H 1.08995 * 110.70451 * 219.41727 * 4 3 2 36 36 H 1.08998 * 110.87232 * 277.38834 * 5 4 3 37 37 H 1.09002 * 111.02413 * 153.63461 * 5 4 3 38 38 H 1.09002 * 113.46942 * 321.94819 * 11 10 8 39 39 H 1.09004 * 113.46251 * 92.38078 * 11 10 8 40 40 H 1.08997 * 114.33002 * 220.47367 * 12 11 10 41 41 H 1.08997 * 114.19482 * 87.73270 * 12 11 10 42 42 H 1.09009 * 109.46693 * 304.10733 * 15 13 10 43 43 H 1.09001 * 109.47195 * 64.09687 * 15 13 10 44 44 H 0.97007 * 120.00166 * 4.97674 * 16 15 13 45 45 H 1.08998 * 109.47337 * 300.00013 * 19 17 16 46 46 H 1.08998 * 109.46870 * 60.00680 * 19 17 16 47 47 H 0.96998 * 120.00519 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9182 1.5166 -1.2305 5 6 3.3047 0.0444 -1.5439 6 6 1.9989 -0.7076 -1.1851 7 1 1.2888 -0.6501 -2.0102 8 6 2.2974 -2.1457 -0.8476 9 8 2.4209 -2.4836 0.3106 10 7 2.4271 -3.0561 -1.8328 11 6 2.2595 -3.0666 -3.2939 12 6 1.9433 -4.5628 -3.1954 13 6 2.7920 -4.4781 -1.9191 14 1 3.8552 -4.6436 -2.0932 15 6 2.2427 -5.3195 -0.7653 16 7 2.7369 -6.6934 -0.8841 17 6 2.3019 -7.6421 -0.0314 18 8 1.5009 -7.3586 0.8340 19 6 2.8099 -9.0556 -0.1540 20 16 2.0446 -10.0847 1.1233 21 6 2.7956 -11.6360 0.7570 22 1 3.4973 -11.7167 -0.0600 23 6 2.4854 -12.7542 1.5185 24 7 1.6305 -12.6557 2.5145 25 14 3.2809 -14.3989 1.1297 26 1 4.1979 -14.2440 -0.0281 27 1 4.0500 -14.8682 2.3102 28 1 2.2280 -15.3922 0.7983 29 1 -0.3633 0.5119 -0.8911 30 1 -0.3634 -1.0277 0.0022 31 1 -0.3633 0.5157 0.8889 32 1 1.1756 2.0891 -0.0688 33 1 2.5673 1.5549 0.9118 34 1 2.3782 1.9593 -2.0674 35 1 3.8017 2.1059 -0.9855 36 1 4.1302 -0.2832 -0.9121 37 1 3.5494 -0.0795 -2.5988 38 1 1.4163 -2.4679 -3.6384 39 1 3.1795 -2.8522 -3.8378 40 1 2.3853 -5.1682 -3.9867 41 1 0.8913 -4.7863 -3.0185 42 1 2.5729 -4.8952 0.1830 43 1 1.1533 -5.3206 -0.8029 44 1 3.3772 -6.9203 -1.5765 45 1 2.5552 -9.4492 -1.1380 46 1 3.8925 -9.0648 -0.0280 47 1 1.4134 -13.4372 3.0465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759815179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:42 Heat of formation + Delta-G solvation = -19.750489 kcal Electronic energy + Delta-G solvation = -26953.437151 eV Core-core repulsion = 23071.112312 eV Total energy + Delta-G solvation = -3882.324839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05987 -39.60050 -38.80706 -37.42078 -34.38227 -32.58445 -32.39898 -31.11365 -29.95505 -29.04317 -27.61671 -26.09668 -25.45007 -23.48215 -23.32876 -21.71298 -21.16580 -20.41070 -19.04519 -17.94628 -17.56964 -16.64077 -16.59459 -16.26778 -15.78297 -15.32853 -15.19230 -15.00248 -14.77886 -14.31606 -14.29948 -13.85111 -13.78903 -13.74898 -13.37057 -13.18897 -13.00279 -12.84161 -12.53733 -12.47280 -12.31625 -11.99606 -11.88233 -11.75765 -11.66850 -11.65232 -11.26032 -11.05099 -10.98827 -10.96486 -10.72393 -9.88260 -9.77548 -9.35133 -9.04858 -9.03239 -8.81171 -8.70158 -8.18445 -6.46126 -6.18567 -3.88806 2.26370 2.41414 3.11217 3.17323 3.23633 3.30777 3.35847 3.52261 3.82014 3.89143 3.98468 4.12280 4.23139 4.32657 4.40940 4.51166 4.60858 4.64412 4.78633 4.90632 4.91469 4.94290 4.95632 5.03657 5.16442 5.20483 5.22538 5.25295 5.32248 5.35307 5.39474 5.49546 5.58090 5.60942 5.70119 5.70432 5.82995 5.94623 6.10477 6.17430 6.42779 6.58193 6.64527 7.43054 7.62682 7.74829 8.02556 8.38398 8.68424 9.26595 10.88926 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.001828 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.859101 B =15315.083885 C =15863.270748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.514 5.514 3 C 0.043 3.957 4 C -0.140 4.140 5 C -0.115 4.115 6 C 0.062 3.938 7 H 0.074 0.926 8 C 0.547 3.453 9 O -0.501 6.501 10 N -0.646 5.646 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.125 3.875 14 H 0.099 0.901 15 C 0.117 3.883 16 N -0.737 5.737 17 C 0.531 3.469 18 O -0.514 6.514 19 C -0.152 4.152 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 29.418 -17.832 34.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.238 5.238 3 C -0.084 4.084 4 C -0.178 4.178 5 C -0.153 4.153 6 C -0.050 4.050 7 H 0.092 0.908 8 C 0.334 3.666 9 O -0.372 6.372 10 N -0.385 5.385 11 C -0.023 4.023 12 C -0.189 4.189 13 C 0.022 3.978 14 H 0.116 0.884 15 C -0.008 4.008 16 N -0.392 5.392 17 C 0.317 3.683 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.524 29.576 -14.903 33.154 hybrid contribution 1.450 -1.030 -2.353 2.949 sum 2.974 28.546 -17.256 33.489 Atomic orbital electron populations 1.22574 0.86728 1.02594 1.00746 1.63046 1.08310 1.13778 1.38637 1.22867 0.98100 0.88581 0.98875 1.22837 1.00360 0.96459 0.98186 1.22669 0.96146 0.94457 1.02032 1.22420 0.98000 0.91816 0.92751 0.90841 1.19991 0.76891 0.85553 0.84120 1.90770 1.48245 1.79644 1.18580 1.49750 1.70121 1.10934 1.07719 1.22904 1.01519 0.96979 0.80939 1.23537 1.01866 0.95946 0.97551 1.22854 0.99641 0.80690 0.94656 0.88361 1.21432 0.99503 0.81204 0.98650 1.45847 1.48457 1.08774 1.36135 1.20298 0.80968 0.86409 0.80606 1.90723 1.32722 1.81804 1.33494 1.23519 1.04727 0.95069 1.06929 1.85456 1.57978 1.02487 1.37491 1.22913 1.30711 0.94591 1.20073 0.90871 1.25000 0.95098 0.99057 0.94521 1.70030 1.31837 1.30444 1.17947 0.86112 0.78966 0.82015 0.78352 1.19635 1.20592 1.20592 0.95452 0.91187 0.90694 0.92254 0.89945 0.91141 0.90013 0.89921 0.90078 0.90379 0.89548 0.88739 0.88244 0.90119 0.91024 0.76986 0.89202 0.89215 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.07 0.55 0.73 16 2 N -0.51 -5.04 4.69 -232.98 -1.09 -6.13 16 3 C 0.04 0.30 6.89 -2.83 -0.02 0.28 16 4 C -0.14 -0.72 6.97 -24.76 -0.17 -0.89 16 5 C -0.11 -0.74 6.49 -24.46 -0.16 -0.90 16 6 C 0.06 0.53 2.68 -67.34 -0.18 0.35 16 7 H 0.07 0.51 7.78 -51.93 -0.40 0.10 16 8 C 0.55 6.50 7.29 -10.99 -0.08 6.42 16 9 O -0.50 -8.51 15.97 5.56 0.09 -8.42 16 10 N -0.65 -5.90 3.57 -177.62 -0.63 -6.53 16 11 C 0.10 0.48 8.41 -8.65 -0.07 0.40 16 12 C -0.15 -0.86 8.00 -26.35 -0.21 -1.07 16 13 C 0.13 1.11 4.09 -72.40 -0.30 0.81 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 15 C 0.12 1.59 5.39 -4.04 -0.02 1.57 16 16 N -0.74 -10.25 5.55 -60.29 -0.33 -10.59 16 17 C 0.53 10.41 7.85 -10.98 -0.09 10.32 16 18 O -0.51 -12.51 15.86 5.56 0.09 -12.42 16 19 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 25 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.03 0.18 8.10 -51.93 -0.42 -0.25 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.34 7.58 -51.93 -0.39 -0.06 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.66 8.05 -51.93 -0.42 0.25 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 42 H 0.08 1.40 7.05 -51.92 -0.37 1.03 16 43 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 44 H 0.40 3.99 8.48 -40.82 -0.35 3.65 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -39.43 401.32 -10.46 -49.89 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.79 Total: -0.72 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.33 Total: 2.00 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.33 Total: -49.07 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.43 -10.46 -49.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.137 kcal (2) G-P(sol) polarization free energy of solvation -39.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds