Wall clock time and date at job start Wed Apr 1 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47438 * 110.99968 * 2 1 4 4 C 1.54325 * 107.37331 * 236.66389 * 3 2 1 5 5 C 1.55398 * 102.89575 * 337.89540 * 4 3 2 6 6 C 1.47850 * 111.00058 * 239.16061 * 2 1 3 7 7 H 1.09006 * 110.36775 * 27.53157 * 6 2 1 8 8 C 1.50700 * 110.37551 * 265.19551 * 6 2 1 9 9 O 1.21282 * 119.99639 * 341.44941 * 8 6 2 10 10 N 1.34773 * 120.00217 * 161.45238 * 8 6 2 11 11 C 1.47066 * 136.05783 * 354.63114 * 10 8 6 12 12 C 1.53237 * 88.08521 * 207.20676 * 11 10 8 13 13 C 1.47062 * 136.05655 * 175.01088 * 10 8 6 14 14 H 1.08998 * 113.46753 * 267.61800 * 13 10 8 15 15 C 1.53006 * 113.47309 * 38.06276 * 13 10 8 16 16 N 1.46490 * 109.47524 * 184.10543 * 15 13 10 17 17 C 1.34779 * 120.00060 * 184.97818 * 16 15 13 18 18 O 1.21278 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99831 * 179.97438 * 17 16 15 20 20 S 1.81003 * 109.46823 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99847 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99905 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99956 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00024 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47553 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47536 * 120.00189 * 25 23 21 28 28 H 1.48504 * 109.47523 * 240.00134 * 25 23 21 29 29 H 1.08998 * 109.47200 * 60.12349 * 1 2 3 30 30 H 1.09005 * 109.47221 * 180.12475 * 1 2 3 31 31 H 1.08997 * 109.46788 * 300.11839 * 1 2 3 32 32 H 1.08995 * 109.89109 * 356.15284 * 3 2 1 33 33 H 1.09001 * 109.88967 * 117.17708 * 3 2 1 34 34 H 1.08998 * 110.70312 * 96.18090 * 4 3 2 35 35 H 1.08995 * 110.70451 * 219.41727 * 4 3 2 36 36 H 1.08998 * 110.87232 * 277.38834 * 5 4 3 37 37 H 1.09002 * 111.02413 * 153.63461 * 5 4 3 38 38 H 1.09002 * 113.46942 * 321.94819 * 11 10 8 39 39 H 1.09004 * 113.46251 * 92.38078 * 11 10 8 40 40 H 1.08997 * 114.33002 * 220.47367 * 12 11 10 41 41 H 1.08997 * 114.19482 * 87.73270 * 12 11 10 42 42 H 1.09009 * 109.46693 * 304.10733 * 15 13 10 43 43 H 1.09001 * 109.47195 * 64.09687 * 15 13 10 44 44 H 0.97007 * 120.00166 * 4.97674 * 16 15 13 45 45 H 1.08998 * 109.47337 * 300.00013 * 19 17 16 46 46 H 1.08998 * 109.46870 * 60.00680 * 19 17 16 47 47 H 0.96998 * 120.00519 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9182 1.5166 -1.2305 5 6 3.3047 0.0444 -1.5439 6 6 1.9989 -0.7076 -1.1851 7 1 1.2888 -0.6501 -2.0102 8 6 2.2974 -2.1457 -0.8476 9 8 2.4209 -2.4836 0.3106 10 7 2.4271 -3.0561 -1.8328 11 6 2.2595 -3.0666 -3.2939 12 6 1.9433 -4.5628 -3.1954 13 6 2.7920 -4.4781 -1.9191 14 1 3.8552 -4.6436 -2.0932 15 6 2.2427 -5.3195 -0.7653 16 7 2.7369 -6.6934 -0.8841 17 6 2.3019 -7.6421 -0.0314 18 8 1.5009 -7.3586 0.8340 19 6 2.8099 -9.0556 -0.1540 20 16 2.0446 -10.0847 1.1233 21 6 2.7956 -11.6360 0.7570 22 1 3.4973 -11.7167 -0.0600 23 6 2.4854 -12.7542 1.5185 24 7 1.6305 -12.6557 2.5145 25 14 3.2809 -14.3989 1.1297 26 1 4.1979 -14.2440 -0.0281 27 1 4.0500 -14.8682 2.3102 28 1 2.2280 -15.3922 0.7983 29 1 -0.3633 0.5119 -0.8911 30 1 -0.3634 -1.0277 0.0022 31 1 -0.3633 0.5157 0.8889 32 1 1.1756 2.0891 -0.0688 33 1 2.5673 1.5549 0.9118 34 1 2.3782 1.9593 -2.0674 35 1 3.8017 2.1059 -0.9855 36 1 4.1302 -0.2832 -0.9121 37 1 3.5494 -0.0795 -2.5988 38 1 1.4163 -2.4679 -3.6384 39 1 3.1795 -2.8522 -3.8378 40 1 2.3853 -5.1682 -3.9867 41 1 0.8913 -4.7863 -3.0185 42 1 2.5729 -4.8952 0.1830 43 1 1.1533 -5.3206 -0.8029 44 1 3.3772 -6.9203 -1.5765 45 1 2.5552 -9.4492 -1.1380 46 1 3.8925 -9.0648 -0.0280 47 1 1.4134 -13.4372 3.0465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759815179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:41 Heat of formation + Delta-G solvation = -51.305731 kcal Electronic energy + Delta-G solvation = -26954.805489 eV Core-core repulsion = 23071.112312 eV Total energy + Delta-G solvation = -3883.693177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80000 -40.63500 -39.93864 -38.29287 -35.78058 -34.58609 -33.14670 -32.03025 -31.27233 -29.60919 -28.77658 -27.63182 -26.69372 -24.29348 -23.99278 -22.21178 -22.00748 -21.67780 -20.03736 -19.62079 -18.42380 -17.81284 -17.67259 -17.14248 -16.88485 -16.74770 -16.64449 -16.18263 -15.84104 -15.74995 -15.04984 -15.00880 -14.81193 -14.64579 -14.43602 -14.33664 -14.00266 -13.76091 -13.57347 -13.43550 -13.16304 -13.11337 -12.93496 -12.88282 -12.60682 -12.56684 -12.39439 -12.33528 -12.12704 -11.77492 -11.70624 -11.64196 -11.16049 -11.04865 -10.73569 -10.26961 -10.18209 -9.76569 -9.31943 -8.68347 -8.34570 -6.13569 1.23709 1.42145 1.43581 1.55465 1.56850 1.59281 1.66846 2.26843 2.32651 2.95966 2.99665 3.30510 3.32136 3.45752 3.58962 3.70998 3.84121 3.93760 3.96810 4.01250 4.05525 4.12427 4.30195 4.35393 4.38133 4.46401 4.48619 4.49464 4.56154 4.67703 4.69701 4.73175 4.84385 4.89767 4.91627 4.96783 5.01018 5.02822 5.25630 5.25923 5.36470 5.42229 5.85931 6.01370 6.20280 6.46458 6.72455 7.06393 7.18919 7.23183 8.75130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.001828 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.859101 B =15315.083885 C =15863.270748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.552 5.552 3 C 0.040 3.960 4 C -0.130 4.130 5 C -0.110 4.110 6 C 0.066 3.934 7 H 0.097 0.903 8 C 0.536 3.464 9 O -0.572 6.572 10 N -0.651 5.651 11 C 0.106 3.894 12 C -0.139 4.139 13 C 0.119 3.881 14 H 0.125 0.875 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.531 3.469 18 O -0.571 6.571 19 C -0.124 4.124 20 S -0.161 6.161 21 C -0.543 4.543 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.003 2.997 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.421 0.579 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 30.206 -22.576 38.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.087 4.087 4 C -0.168 4.168 5 C -0.148 4.148 6 C -0.046 4.046 7 H 0.115 0.885 8 C 0.326 3.674 9 O -0.449 6.449 10 N -0.388 5.388 11 C -0.014 4.014 12 C -0.176 4.176 13 C 0.015 3.985 14 H 0.142 0.858 15 C -0.001 4.001 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.450 6.450 19 C -0.275 4.275 20 S 0.066 5.934 21 C -0.691 4.691 22 H 0.105 0.895 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.177 1.177 27 H -0.201 1.201 28 H -0.199 1.199 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.259 0.741 45 H 0.136 0.864 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.450 30.396 -19.766 36.421 hybrid contribution 0.860 -1.192 -0.904 1.725 sum 4.309 29.204 -20.670 36.037 Atomic orbital electron populations 1.22505 0.86420 1.01364 1.01929 1.62921 1.09006 1.15561 1.40215 1.22901 0.98876 0.87509 0.99441 1.22827 1.00455 0.95758 0.97763 1.22691 0.94113 0.94769 1.03240 1.22473 0.99613 0.89692 0.92827 0.88508 1.20760 0.75832 0.87191 0.83650 1.90734 1.51659 1.80981 1.21552 1.49964 1.68728 1.10469 1.09661 1.23226 1.03944 0.96350 0.77922 1.23526 1.00600 0.97470 0.96042 1.23119 1.01536 0.79970 0.93826 0.85787 1.21355 0.98385 0.81109 0.99250 1.45473 1.47516 1.07951 1.34967 1.20234 0.80464 0.86940 0.80676 1.90713 1.35508 1.82584 1.36160 1.23338 1.05065 0.94014 1.05112 1.85728 1.60281 1.05266 1.42100 1.23243 1.30808 0.94527 1.20487 0.89545 1.26194 0.95514 1.03686 0.94065 1.70206 1.33606 1.31854 1.19336 0.84852 0.78076 0.75995 0.78671 1.17713 1.20116 1.19893 0.93016 0.93564 0.90710 0.90774 0.91481 0.88945 0.89018 0.92306 0.87066 0.88463 0.86122 0.85334 0.89657 0.94483 0.93201 0.74066 0.86354 0.86959 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.12 127.69 1.16 1.60 16 2 N -0.55 -11.01 4.69 -891.00 -4.18 -15.20 16 3 C 0.04 0.53 6.89 86.65 0.60 1.13 16 4 C -0.13 -1.01 6.97 31.87 0.22 -0.79 16 5 C -0.11 -1.18 6.49 32.07 0.21 -0.98 16 6 C 0.07 1.06 2.68 44.64 0.12 1.18 16 7 H 0.10 1.07 7.78 -2.38 -0.02 1.06 16 8 C 0.54 13.02 7.29 87.66 0.64 13.66 16 9 O -0.57 -21.18 15.97 -3.04 -0.05 -21.23 16 10 N -0.65 -10.97 3.57 -834.27 -2.98 -13.95 16 11 C 0.11 0.56 8.41 83.09 0.70 1.26 16 12 C -0.14 -1.08 8.00 30.84 0.25 -0.83 16 13 C 0.12 1.89 4.09 41.79 0.17 2.06 16 14 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 15 C 0.12 3.49 5.39 86.38 0.47 3.95 16 16 N -0.70 -19.04 5.55 -463.06 -2.57 -21.61 16 17 C 0.53 21.07 7.85 87.66 0.69 21.76 16 18 O -0.57 -29.41 15.86 -3.02 -0.05 -29.46 16 19 C -0.12 -5.02 6.16 71.24 0.44 -4.58 16 20 S -0.16 -9.23 20.57 -56.49 -1.16 -10.39 16 21 C -0.54 -31.39 9.50 67.95 0.65 -30.74 16 22 H 0.09 4.59 7.80 -2.91 -0.02 4.56 16 23 C 0.01 0.57 5.49 84.86 0.47 1.03 16 24 N -0.91 -57.30 13.22 21.65 0.29 -57.02 16 25 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.05 0.59 8.10 -2.39 -0.02 0.57 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.73 7.58 -2.39 -0.02 0.71 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.08 0.97 7.95 -2.39 -0.02 0.95 16 42 H 0.04 1.40 7.05 -2.38 -0.02 1.38 16 43 H 0.05 1.61 7.89 -2.39 -0.02 1.60 16 44 H 0.42 7.25 8.48 -92.70 -0.79 6.46 16 45 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 46 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -95.47 401.32 -1.73 -97.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.18 Total: 15.88 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.77 Total: 9.71 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -9.44 Total: -107.77 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Total: -95.47 -1.73 -97.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.889 kcal (2) G-P(sol) polarization free energy of solvation -95.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds