Wall clock time and date at job start Wed Apr 1 2020 01:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47895 * 110.99960 * 2 1 4 4 C 1.53996 * 107.22490 * 214.25847 * 3 2 1 5 5 C 1.54591 * 105.14159 * 1.12124 * 4 3 2 6 6 C 1.48809 * 111.18325 * 242.66347 * 2 1 3 7 7 H 1.08995 * 110.66516 * 41.00070 * 6 2 1 8 8 C 1.50705 * 110.69767 * 278.02137 * 6 2 1 9 9 O 1.21281 * 119.99796 * 346.02871 * 8 6 2 10 10 N 1.34775 * 119.99920 * 166.02689 * 8 6 2 11 11 C 1.47063 * 136.05816 * 354.95519 * 10 8 6 12 12 C 1.53506 * 87.98602 * 152.84273 * 11 10 8 13 13 C 1.47070 * 136.05676 * 174.58251 * 10 8 6 14 14 H 1.09004 * 113.46223 * 92.38100 * 13 10 8 15 15 C 1.52995 * 113.46911 * 321.94321 * 13 10 8 16 16 N 1.46499 * 109.47434 * 175.85422 * 15 13 10 17 17 C 1.34776 * 120.00620 * 184.96076 * 16 15 13 18 18 O 1.21286 * 119.99259 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00517 * 179.97438 * 17 16 15 20 20 S 1.80991 * 109.47190 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00039 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00261 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00210 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99676 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47481 * 120.00538 * 25 23 21 28 28 H 1.48509 * 109.47492 * 240.00389 * 25 23 21 29 29 H 1.09000 * 109.47183 * 59.87509 * 1 2 3 30 30 H 1.09002 * 109.47199 * 179.87489 * 1 2 3 31 31 H 1.08998 * 109.47210 * 299.87267 * 1 2 3 32 32 H 1.08997 * 109.92433 * 94.80412 * 3 2 1 33 33 H 1.09004 * 109.91973 * 333.70295 * 3 2 1 34 34 H 1.08999 * 110.30871 * 120.04412 * 4 3 2 35 35 H 1.09002 * 110.30552 * 242.20844 * 4 3 2 36 36 H 1.08997 * 110.72561 * 140.31256 * 5 4 3 37 37 H 1.08994 * 110.73096 * 263.60621 * 5 4 3 38 38 H 1.08999 * 113.47240 * 267.61948 * 11 10 8 39 39 H 1.08999 * 113.46771 * 38.07089 * 11 10 8 40 40 H 1.09001 * 114.20668 * 139.65456 * 12 11 10 41 41 H 1.08997 * 114.20836 * 272.48571 * 12 11 10 42 42 H 1.09008 * 109.47050 * 295.85192 * 15 13 10 43 43 H 1.09002 * 109.47545 * 55.85086 * 15 13 10 44 44 H 0.97003 * 119.99792 * 4.96198 * 16 15 13 45 45 H 1.08992 * 109.46874 * 300.00377 * 19 17 16 46 46 H 1.08999 * 109.46778 * 59.99983 * 19 17 16 47 47 H 0.97006 * 119.99316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2974 1.3708 -0.8280 5 6 3.4527 -0.0872 -1.3180 6 6 2.0067 -0.6372 -1.2326 7 1 1.4281 -0.3352 -2.1055 8 6 2.0158 -2.1380 -1.0959 9 8 1.8621 -2.6486 -0.0065 10 7 2.1946 -2.9127 -2.1841 11 6 2.3171 -2.6916 -3.6328 12 6 3.1494 -3.9794 -3.7043 13 6 2.3595 -4.3507 -2.4448 14 1 1.4214 -4.8638 -2.6563 15 6 3.2024 -5.0686 -1.3889 16 7 3.2280 -6.5045 -1.6779 17 6 3.8297 -7.3538 -0.8216 18 8 4.3497 -6.9291 0.1885 19 6 3.8554 -8.8310 -1.1186 20 16 4.7293 -9.6980 0.2082 21 6 4.6116 -11.3549 -0.3796 22 1 4.1063 -11.5628 -1.3112 23 6 5.1692 -12.3928 0.3541 24 7 5.7855 -12.1394 1.4893 25 14 5.0450 -14.1492 -0.2694 26 1 4.3094 -14.1658 -1.5593 27 1 6.4090 -14.7007 -0.4709 28 1 4.3182 -14.9778 0.7260 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3634 -1.0277 -0.0022 31 1 -0.3633 0.5118 0.8911 32 1 2.2122 1.6967 1.0211 33 1 1.2744 2.0567 -0.4540 34 1 3.2095 2.0481 -1.6775 35 1 4.1458 1.6528 -0.2045 36 1 3.8147 -0.1122 -2.3457 37 1 4.1176 -0.6466 -0.6599 38 1 1.3677 -2.7584 -4.1641 39 1 2.8819 -1.7951 -3.8889 40 1 2.9326 -4.6042 -4.5707 41 1 4.2156 -3.8326 -3.5320 42 1 4.2193 -4.6761 -1.4074 43 1 2.7674 -4.9040 -0.4031 44 1 2.8117 -6.8442 -2.4855 45 1 2.8342 -9.2056 -1.1869 46 1 4.3694 -9.0025 -2.0644 47 1 6.1749 -12.8649 2.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759815180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:45 Heat of formation + Delta-G solvation = -19.960417 kcal Electronic energy + Delta-G solvation = -26999.666819 eV Core-core repulsion = 23117.332877 eV Total energy + Delta-G solvation = -3882.333942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08021 -39.56710 -38.80783 -37.43881 -34.39403 -32.67053 -32.39992 -31.09948 -29.96176 -29.03570 -27.62780 -26.06933 -25.45170 -23.49059 -23.36141 -21.61413 -21.16328 -20.42493 -19.04631 -17.93189 -17.69219 -16.65863 -16.55098 -16.26755 -15.81598 -15.21955 -15.20365 -14.78440 -14.73061 -14.55395 -14.44035 -14.08520 -13.84774 -13.76711 -13.26438 -13.00972 -12.89951 -12.87121 -12.53950 -12.46724 -12.37504 -12.05441 -11.87593 -11.85537 -11.68062 -11.56186 -11.12268 -11.05138 -10.99024 -10.94236 -10.72279 -9.88600 -9.77799 -9.36183 -9.06141 -9.04928 -8.85486 -8.81254 -8.18704 -6.46358 -6.18768 -3.88993 2.23058 2.39435 3.10917 3.16355 3.23495 3.30638 3.35692 3.51579 3.80706 3.87390 4.01801 4.12616 4.22927 4.34510 4.46663 4.50163 4.59540 4.65283 4.76439 4.88229 4.91644 4.94912 4.96059 5.02119 5.16254 5.19567 5.21812 5.30464 5.32948 5.37189 5.41972 5.54706 5.58707 5.60007 5.68300 5.71510 5.80557 5.93783 6.07310 6.16891 6.33902 6.53986 6.62764 7.40178 7.62506 7.73578 7.98410 8.38198 8.67393 9.26411 10.88703 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.001855 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.678852 B =15090.025814 C =15549.521179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.499 5.499 3 C 0.036 3.964 4 C -0.130 4.130 5 C -0.110 4.110 6 C 0.053 3.947 7 H 0.072 0.928 8 C 0.548 3.452 9 O -0.502 6.502 10 N -0.646 5.646 11 C 0.099 3.901 12 C -0.151 4.151 13 C 0.126 3.874 14 H 0.099 0.901 15 C 0.116 3.884 16 N -0.736 5.736 17 C 0.531 3.469 18 O -0.513 6.513 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 28.603 -15.728 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.223 5.223 3 C -0.092 4.092 4 C -0.168 4.168 5 C -0.148 4.148 6 C -0.058 4.058 7 H 0.090 0.910 8 C 0.336 3.664 9 O -0.374 6.374 10 N -0.385 5.385 11 C -0.024 4.024 12 C -0.189 4.189 13 C 0.022 3.978 14 H 0.116 0.884 15 C -0.009 4.009 16 N -0.392 5.392 17 C 0.317 3.683 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.797 28.865 -12.553 32.682 hybrid contribution -1.380 -1.287 -2.713 3.305 sum -10.177 27.578 -15.266 33.123 Atomic orbital electron populations 1.22543 0.87047 1.02713 1.00748 1.64446 1.08563 1.14464 1.34813 1.22909 0.95783 0.89122 1.01359 1.22405 0.98185 0.96379 0.99798 1.22416 0.94140 0.96027 1.02219 1.22692 0.98071 0.91705 0.93368 0.91024 1.19882 0.76041 0.87812 0.82629 1.90781 1.46674 1.74539 1.25433 1.49710 1.73970 1.08167 1.06663 1.22967 0.99784 0.99370 0.80267 1.23555 1.00416 0.97030 0.97916 1.22796 0.98520 0.82821 0.93681 0.88375 1.21414 0.99802 0.80380 0.99272 1.45830 1.60598 1.06508 1.26249 1.20309 0.77281 0.87960 0.82745 1.90728 1.43584 1.78426 1.25933 1.23515 1.05833 0.93926 1.06964 1.85459 1.70919 1.01684 1.25323 1.22911 1.42541 0.92115 1.10724 0.90872 1.25005 0.94572 0.99456 0.94664 1.70037 1.34327 1.32785 1.13088 0.86110 0.77986 0.82582 0.78754 1.19636 1.20595 1.20588 0.95521 0.90979 0.90697 0.89690 0.93495 0.91093 0.90248 0.90249 0.89812 0.89577 0.90242 0.88710 0.88143 0.91398 0.89795 0.76964 0.89213 0.89194 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.31 60.07 0.56 0.71 16 2 N -0.50 -4.92 4.84 -231.98 -1.12 -6.04 16 3 C 0.04 0.25 6.69 -2.76 -0.02 0.23 16 4 C -0.13 -0.74 6.93 -25.38 -0.18 -0.91 16 5 C -0.11 -0.78 6.49 -24.87 -0.16 -0.94 16 6 C 0.05 0.47 2.55 -66.78 -0.17 0.30 16 7 H 0.07 0.49 7.97 -51.93 -0.41 0.08 16 8 C 0.55 6.51 7.04 -10.98 -0.08 6.43 16 9 O -0.50 -8.50 16.18 5.56 0.09 -8.41 16 10 N -0.65 -5.85 3.57 -177.60 -0.63 -6.49 16 11 C 0.10 0.46 8.42 -8.51 -0.07 0.39 16 12 C -0.15 -0.79 8.00 -26.35 -0.21 -1.00 16 13 C 0.13 1.10 4.06 -72.53 -0.29 0.80 16 14 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.12 1.55 5.47 -4.04 -0.02 1.53 16 16 N -0.74 -10.15 5.55 -60.29 -0.33 -10.48 16 17 C 0.53 10.37 7.85 -10.99 -0.09 10.28 16 18 O -0.51 -12.47 15.86 5.55 0.09 -12.38 16 19 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.03 0.18 8.01 -51.93 -0.42 -0.24 16 30 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.26 7.73 -51.93 -0.40 -0.14 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 42 H 0.07 0.96 7.88 -51.92 -0.41 0.55 16 43 H 0.08 1.47 7.15 -51.93 -0.37 1.09 16 44 H 0.40 3.94 8.48 -40.82 -0.35 3.59 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -39.36 401.52 -10.47 -49.83 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.80 Total: -0.78 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.31 Total: 1.80 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.36 Total: -48.81 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.36 -10.47 -49.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.870 kcal (2) G-P(sol) polarization free energy of solvation -39.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds