Wall clock time and date at job start Wed Apr 1 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47895 * 110.99960 * 2 1 4 4 C 1.53996 * 107.22490 * 214.25847 * 3 2 1 5 5 C 1.54591 * 105.14159 * 1.12124 * 4 3 2 6 6 C 1.48809 * 111.18325 * 242.66347 * 2 1 3 7 7 H 1.08995 * 110.66516 * 41.00070 * 6 2 1 8 8 C 1.50705 * 110.69767 * 278.02137 * 6 2 1 9 9 O 1.21281 * 119.99796 * 346.02871 * 8 6 2 10 10 N 1.34775 * 119.99920 * 166.02689 * 8 6 2 11 11 C 1.47063 * 136.05816 * 354.95519 * 10 8 6 12 12 C 1.53506 * 87.98602 * 152.84273 * 11 10 8 13 13 C 1.47070 * 136.05676 * 174.58251 * 10 8 6 14 14 H 1.09004 * 113.46223 * 92.38100 * 13 10 8 15 15 C 1.52995 * 113.46911 * 321.94321 * 13 10 8 16 16 N 1.46499 * 109.47434 * 175.85422 * 15 13 10 17 17 C 1.34776 * 120.00620 * 184.96076 * 16 15 13 18 18 O 1.21286 * 119.99259 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00517 * 179.97438 * 17 16 15 20 20 S 1.80991 * 109.47190 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00039 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00261 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00210 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99676 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47481 * 120.00538 * 25 23 21 28 28 H 1.48509 * 109.47492 * 240.00389 * 25 23 21 29 29 H 1.09000 * 109.47183 * 59.87509 * 1 2 3 30 30 H 1.09002 * 109.47199 * 179.87489 * 1 2 3 31 31 H 1.08998 * 109.47210 * 299.87267 * 1 2 3 32 32 H 1.08997 * 109.92433 * 94.80412 * 3 2 1 33 33 H 1.09004 * 109.91973 * 333.70295 * 3 2 1 34 34 H 1.08999 * 110.30871 * 120.04412 * 4 3 2 35 35 H 1.09002 * 110.30552 * 242.20844 * 4 3 2 36 36 H 1.08997 * 110.72561 * 140.31256 * 5 4 3 37 37 H 1.08994 * 110.73096 * 263.60621 * 5 4 3 38 38 H 1.08999 * 113.47240 * 267.61948 * 11 10 8 39 39 H 1.08999 * 113.46771 * 38.07089 * 11 10 8 40 40 H 1.09001 * 114.20668 * 139.65456 * 12 11 10 41 41 H 1.08997 * 114.20836 * 272.48571 * 12 11 10 42 42 H 1.09008 * 109.47050 * 295.85192 * 15 13 10 43 43 H 1.09002 * 109.47545 * 55.85086 * 15 13 10 44 44 H 0.97003 * 119.99792 * 4.96198 * 16 15 13 45 45 H 1.08992 * 109.46874 * 300.00377 * 19 17 16 46 46 H 1.08999 * 109.46778 * 59.99983 * 19 17 16 47 47 H 0.97006 * 119.99316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2974 1.3708 -0.8280 5 6 3.4527 -0.0872 -1.3180 6 6 2.0067 -0.6372 -1.2326 7 1 1.4281 -0.3352 -2.1055 8 6 2.0158 -2.1380 -1.0959 9 8 1.8621 -2.6486 -0.0065 10 7 2.1946 -2.9127 -2.1841 11 6 2.3171 -2.6916 -3.6328 12 6 3.1494 -3.9794 -3.7043 13 6 2.3595 -4.3507 -2.4448 14 1 1.4214 -4.8638 -2.6563 15 6 3.2024 -5.0686 -1.3889 16 7 3.2280 -6.5045 -1.6779 17 6 3.8297 -7.3538 -0.8216 18 8 4.3497 -6.9291 0.1885 19 6 3.8554 -8.8310 -1.1186 20 16 4.7293 -9.6980 0.2082 21 6 4.6116 -11.3549 -0.3796 22 1 4.1063 -11.5628 -1.3112 23 6 5.1692 -12.3928 0.3541 24 7 5.7855 -12.1394 1.4893 25 14 5.0450 -14.1492 -0.2694 26 1 4.3094 -14.1658 -1.5593 27 1 6.4090 -14.7007 -0.4709 28 1 4.3182 -14.9778 0.7260 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3634 -1.0277 -0.0022 31 1 -0.3633 0.5118 0.8911 32 1 2.2122 1.6967 1.0211 33 1 1.2744 2.0567 -0.4540 34 1 3.2095 2.0481 -1.6775 35 1 4.1458 1.6528 -0.2045 36 1 3.8147 -0.1122 -2.3457 37 1 4.1176 -0.6466 -0.6599 38 1 1.3677 -2.7584 -4.1641 39 1 2.8819 -1.7951 -3.8889 40 1 2.9326 -4.6042 -4.5707 41 1 4.2156 -3.8326 -3.5320 42 1 4.2193 -4.6761 -1.4074 43 1 2.7674 -4.9040 -0.4031 44 1 2.8117 -6.8442 -2.4855 45 1 2.8342 -9.2056 -1.1869 46 1 4.3694 -9.0025 -2.0644 47 1 6.1749 -12.8649 2.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759815180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:44 Heat of formation + Delta-G solvation = -51.580473 kcal Electronic energy + Delta-G solvation = -27001.037968 eV Core-core repulsion = 23117.332877 eV Total energy + Delta-G solvation = -3883.705090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81414 -40.63092 -39.91255 -38.30373 -35.77848 -34.58544 -33.25699 -32.02742 -31.26408 -29.59825 -28.77763 -27.63161 -26.67513 -24.28382 -24.02488 -22.19925 -21.92418 -21.70699 -20.03782 -19.61579 -18.48535 -17.89647 -17.66753 -17.11428 -16.88400 -16.75824 -16.60277 -16.16079 -15.84922 -15.41135 -15.27776 -15.13025 -14.79908 -14.69437 -14.64523 -14.43491 -13.91481 -13.62100 -13.47055 -13.45024 -13.16257 -13.10230 -12.95533 -12.89519 -12.60090 -12.57746 -12.49117 -12.35475 -12.11475 -11.75427 -11.61102 -11.60019 -11.16064 -11.04431 -10.74020 -10.26935 -10.20864 -9.78160 -9.43258 -8.68359 -8.34622 -6.13562 1.23542 1.42119 1.43293 1.53406 1.55788 1.57033 1.67146 2.26828 2.33029 2.95452 2.99606 3.30025 3.32057 3.46134 3.56128 3.72070 3.84535 3.94716 3.97263 3.99113 4.04688 4.15467 4.30055 4.35629 4.37023 4.44209 4.48251 4.49388 4.54913 4.66603 4.68512 4.73349 4.84268 4.90037 4.94235 4.96380 5.02279 5.05989 5.23130 5.26366 5.36375 5.42208 5.77355 5.97183 6.20241 6.46345 6.70275 7.06350 7.15908 7.22253 8.75045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.001855 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.678852 B =15090.025814 C =15549.521179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.034 3.966 4 C -0.123 4.123 5 C -0.108 4.108 6 C 0.059 3.941 7 H 0.101 0.899 8 C 0.538 3.462 9 O -0.573 6.573 10 N -0.651 5.651 11 C 0.104 3.896 12 C -0.135 4.135 13 C 0.118 3.882 14 H 0.117 0.883 15 C 0.123 3.877 16 N -0.704 5.704 17 C 0.531 3.469 18 O -0.571 6.571 19 C -0.124 4.124 20 S -0.161 6.161 21 C -0.543 4.543 22 H 0.086 0.914 23 C 0.009 3.991 24 N -0.913 5.913 25 Si 1.003 2.997 26 H -0.254 1.254 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.421 0.579 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 29.374 -20.628 37.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.093 4.093 4 C -0.161 4.161 5 C -0.146 4.146 6 C -0.053 4.053 7 H 0.118 0.882 8 C 0.327 3.673 9 O -0.450 6.450 10 N -0.388 5.388 11 C -0.017 4.017 12 C -0.172 4.172 13 C 0.014 3.986 14 H 0.134 0.866 15 C -0.002 4.002 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.449 6.449 19 C -0.275 4.275 20 S 0.066 5.934 21 C -0.690 4.690 22 H 0.105 0.895 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.177 1.177 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.260 0.740 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.016 29.668 -17.575 35.908 hybrid contribution -1.047 -1.441 -1.223 2.161 sum -11.063 28.226 -18.798 35.672 Atomic orbital electron populations 1.22463 0.86727 1.01360 1.01987 1.64355 1.09301 1.16327 1.36286 1.22955 0.96858 0.87977 1.01469 1.22419 0.97383 0.95818 1.00505 1.22438 0.92557 0.96344 1.03255 1.22731 0.99336 0.89341 0.93870 0.88190 1.20616 0.74909 0.89407 0.82318 1.90745 1.50091 1.75925 1.28257 1.49935 1.72283 1.08234 1.08334 1.23296 1.01331 1.00103 0.76941 1.23546 0.99636 0.97577 0.96476 1.23047 0.99260 0.82632 0.93635 0.86567 1.21359 0.99830 0.80047 0.98981 1.45455 1.58427 1.06256 1.25757 1.20237 0.77266 0.88180 0.82658 1.90718 1.46468 1.79158 1.28585 1.23334 1.06055 0.93495 1.04643 1.85730 1.73126 1.03985 1.30539 1.23241 1.42674 0.91964 1.11166 0.89545 1.26201 0.93812 1.04810 0.94681 1.70214 1.35512 1.34490 1.14768 0.84851 0.78339 0.75680 0.78710 1.17707 1.19908 1.20109 0.93174 0.93577 0.90478 0.90623 0.91579 0.88314 0.90351 0.87298 0.93055 0.86816 0.87854 0.85327 0.88832 0.92644 0.94636 0.74049 0.86954 0.86367 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.31 127.69 1.19 1.58 16 2 N -0.54 -10.69 4.84 -887.85 -4.29 -14.99 16 3 C 0.03 0.45 6.69 86.45 0.58 1.02 16 4 C -0.12 -1.17 6.93 31.47 0.22 -0.95 16 5 C -0.11 -1.38 6.49 31.80 0.21 -1.18 16 6 C 0.06 0.97 2.55 44.46 0.11 1.08 16 7 H 0.10 1.05 7.97 -2.39 -0.02 1.03 16 8 C 0.54 13.07 7.04 87.66 0.62 13.69 16 9 O -0.57 -21.18 16.18 -3.03 -0.05 -21.22 16 10 N -0.65 -10.88 3.57 -834.19 -2.98 -13.86 16 11 C 0.10 0.50 8.42 83.18 0.70 1.20 16 12 C -0.13 -0.87 8.00 30.84 0.25 -0.62 16 13 C 0.12 1.86 4.06 41.70 0.17 2.03 16 14 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 15 C 0.12 3.37 5.47 86.38 0.47 3.85 16 16 N -0.70 -18.80 5.55 -463.06 -2.57 -21.37 16 17 C 0.53 20.97 7.85 87.66 0.69 21.66 16 18 O -0.57 -29.33 15.86 -3.05 -0.05 -29.38 16 19 C -0.12 -5.01 6.16 71.23 0.44 -4.57 16 20 S -0.16 -9.23 20.57 -56.49 -1.16 -10.39 16 21 C -0.54 -31.36 9.50 67.96 0.65 -30.71 16 22 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 23 C 0.01 0.54 5.49 84.86 0.47 1.01 16 24 N -0.91 -57.29 13.22 21.65 0.29 -57.01 16 25 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 26 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.05 0.58 8.01 -2.39 -0.02 0.56 16 30 H 0.05 1.00 8.03 -2.39 -0.02 0.98 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.59 7.73 -2.39 -0.02 0.57 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.99 8.05 -2.39 -0.02 0.97 16 38 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.09 0.81 7.93 -2.39 -0.02 0.79 16 42 H 0.06 1.65 7.88 -2.38 -0.02 1.64 16 43 H 0.04 1.35 7.15 -2.39 -0.02 1.33 16 44 H 0.42 7.13 8.48 -92.71 -0.79 6.34 16 45 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 46 H 0.12 4.12 8.14 -2.40 -0.02 4.10 16 47 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -95.38 401.52 -1.86 -97.24 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.18 Total: 15.84 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.75 Total: 9.08 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -9.56 Total: -107.23 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.10 Total: -50.60 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Total: -95.38 -1.86 -97.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.659 kcal (2) G-P(sol) polarization free energy of solvation -95.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds