Wall clock time and date at job start Wed Apr 1 2020 01:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00114 * 2 1 4 4 O 1.21274 * 120.00374 * 174.76664 * 3 2 1 5 5 C 1.50701 * 119.99806 * 354.77152 * 3 2 1 6 6 H 1.09001 * 109.88237 * 4.60255 * 5 3 2 7 7 C 1.54322 * 109.88648 * 243.57526 * 5 3 2 8 8 C 1.55400 * 102.89688 * 218.40429 * 7 5 3 9 9 C 1.54903 * 101.74252 * 35.48200 * 8 7 5 10 10 N 1.47439 * 109.89390 * 125.63524 * 5 3 2 11 11 C 1.46902 * 110.99607 * 356.15065 * 10 5 3 12 12 C 1.46503 * 120.00209 * 180.02562 * 2 1 3 13 13 C 1.53498 * 114.20452 * 60.00120 * 12 2 1 14 14 N 1.47069 * 87.98133 * 220.34820 * 13 12 2 15 15 C 1.34780 * 136.05542 * 207.08974 * 14 13 12 16 16 O 1.21285 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00119 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47157 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00055 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99913 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00233 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00213 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99825 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47191 * 90.00159 * 23 21 19 25 25 H 1.48503 * 109.46963 * 210.00088 * 23 21 19 26 26 H 1.48499 * 109.46814 * 329.99901 * 23 21 19 27 27 C 1.47066 * 87.88893 * 27.34066 * 14 13 12 28 28 H 1.09002 * 109.47561 * 274.14360 * 1 2 3 29 29 H 1.09003 * 109.47385 * 34.14947 * 1 2 3 30 30 H 1.09003 * 109.47016 * 154.14307 * 1 2 3 31 31 H 1.08991 * 110.70603 * 336.69062 * 7 5 3 32 32 H 1.09001 * 110.70567 * 99.92543 * 7 5 3 33 33 H 1.08999 * 110.87581 * 277.39160 * 8 7 5 34 34 H 1.09001 * 111.05594 * 153.65160 * 8 7 5 35 35 H 1.08999 * 110.37486 * 204.19155 * 9 8 7 36 36 H 1.09002 * 110.37616 * 81.84412 * 9 8 7 37 37 H 1.08999 * 109.47612 * 71.84973 * 11 10 5 38 38 H 1.09003 * 109.47156 * 191.84773 * 11 10 5 39 39 H 1.08999 * 109.47196 * 311.84280 * 11 10 5 40 40 H 1.08995 * 113.41401 * 193.20454 * 12 2 1 41 41 H 1.08995 * 113.46503 * 105.56602 * 13 12 2 42 42 H 1.09000 * 113.46775 * 335.12193 * 13 12 2 43 43 H 1.08993 * 109.47425 * 59.99658 * 17 15 14 44 44 H 1.09004 * 109.47237 * 299.99114 * 17 15 14 45 45 H 0.97001 * 120.00261 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46194 * 87.43828 * 27 14 13 47 47 H 1.08993 * 113.46801 * 217.87534 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1694 0.0958 5 6 1.3900 2.4696 -0.1189 6 1 0.3164 2.2818 -0.1128 7 6 1.7899 3.1876 -1.4251 8 6 1.8365 4.6815 -0.9994 9 6 2.3760 4.5798 0.4490 10 7 1.7499 3.3592 1.0004 11 6 2.6534 2.6829 1.9408 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1632 -1.2135 14 7 1.9119 -3.3155 -0.2995 15 6 2.1758 -4.6332 -0.4011 16 8 2.5015 -5.1059 -1.4695 17 6 2.0652 -5.5195 0.8126 18 16 2.4784 -7.2217 0.3564 19 6 2.2738 -8.0149 1.9164 20 1 1.9756 -7.4389 2.7800 21 6 2.4959 -9.3798 2.0355 22 7 2.3426 -9.9724 3.2008 23 14 3.0125 -10.3757 0.5420 24 1 4.4944 -10.3945 0.4479 25 1 2.5073 -11.7658 0.6752 26 1 2.4463 -9.7587 -0.6844 27 6 1.4969 -2.3982 0.7725 28 1 -0.3634 0.0743 1.0250 29 1 -0.3634 0.8505 -0.5769 30 1 -0.3633 -0.9248 -0.4482 31 1 2.7703 2.8532 -1.7641 32 1 1.0384 3.0278 -2.1983 33 1 0.8391 5.1209 -1.0147 34 1 2.5201 5.2478 -1.6319 35 1 2.0771 5.4540 1.0275 36 1 3.4615 4.4803 0.4436 37 1 3.6384 2.5771 1.4860 38 1 2.7361 3.2732 2.8534 39 1 2.2562 1.6967 2.1808 40 1 3.2574 -1.1570 0.2280 41 1 2.7159 -2.1833 -1.9426 42 1 0.9334 -1.9748 -1.6680 43 1 1.0458 -5.4840 1.1968 44 1 2.7555 -5.1713 1.5810 45 1 2.4982 -10.9262 3.2842 46 1 0.4165 -2.2717 0.8413 47 1 1.9582 -2.6185 1.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759951624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:18 Heat of formation + Delta-G solvation = 0.860467 kcal Electronic energy + Delta-G solvation = -27452.455229 eV Core-core repulsion = 23571.024149 eV Total energy + Delta-G solvation = -3881.431080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52077 -40.33052 -38.32803 -37.45133 -35.32177 -32.53939 -32.46463 -30.91892 -29.89647 -28.12339 -27.34445 -26.16007 -26.01673 -25.60714 -23.61528 -21.77331 -21.19219 -19.31830 -19.22522 -18.20205 -17.75988 -17.09272 -16.70104 -16.53946 -15.93051 -15.74090 -15.31254 -14.98995 -14.91700 -14.45119 -14.13307 -14.09838 -13.97210 -13.59269 -13.28459 -13.07260 -13.01261 -12.84811 -12.80231 -12.65073 -12.56040 -12.34797 -11.94012 -11.91188 -11.63089 -11.60295 -11.33887 -11.28450 -11.26381 -11.02794 -10.65485 -10.41178 -9.88761 -9.63905 -9.21401 -9.02916 -8.79602 -8.68189 -8.54190 -6.95963 -6.31211 -4.03751 2.00304 2.19596 2.62955 2.87385 3.13344 3.31736 3.48581 3.53847 3.54509 3.84028 3.96797 4.11496 4.20176 4.29296 4.34188 4.50766 4.59706 4.61571 4.72919 4.77200 4.92585 4.94840 5.01076 5.05261 5.07764 5.10270 5.15204 5.18793 5.26104 5.28714 5.36935 5.38713 5.43482 5.52745 5.55424 5.66957 5.69198 5.73759 5.74671 5.96389 6.03196 6.34922 6.45790 6.81976 7.63290 7.65067 7.91699 8.31662 8.39096 9.14679 10.77884 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.001945 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.620892 B =14392.651947 C =14764.474158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.602 5.602 3 C 0.509 3.491 4 O -0.531 6.531 5 C 0.047 3.953 6 H 0.109 0.891 7 C -0.130 4.130 8 C -0.126 4.126 9 C 0.037 3.963 10 N -0.508 5.508 11 C 0.006 3.994 12 C 0.108 3.892 13 C 0.093 3.907 14 N -0.648 5.648 15 C 0.565 3.435 16 O -0.512 6.512 17 C -0.115 4.115 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.090 3.910 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.090 0.910 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 31.858 -6.310 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.335 5.335 3 C 0.297 3.703 4 O -0.407 6.407 5 C -0.064 4.064 6 H 0.127 0.873 7 C -0.168 4.168 8 C -0.164 4.164 9 C -0.090 4.090 10 N -0.233 5.233 11 C -0.141 4.141 12 C 0.003 3.997 13 C -0.032 4.032 14 N -0.387 5.387 15 C 0.355 3.645 16 O -0.385 6.385 17 C -0.266 4.266 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.034 4.034 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.154 0.846 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.129 30.836 -7.458 32.137 hybrid contribution 0.338 -0.468 0.558 0.802 sum -4.791 30.369 -6.900 31.509 Atomic orbital electron populations 1.21998 0.78901 1.03794 1.02832 1.47801 1.07188 1.05253 1.73282 1.21125 0.88124 0.85479 0.75580 1.90708 1.14317 1.86986 1.48697 1.22843 1.01138 0.89643 0.92781 0.87341 1.22806 1.02967 0.95357 0.95692 1.22741 1.02201 0.95731 0.95768 1.23182 0.97748 0.93219 0.94885 1.64092 1.41590 1.04741 1.12903 1.22906 0.96464 0.98588 0.96192 1.23027 0.98723 0.81073 0.96878 1.23341 1.02491 0.82399 0.94934 1.49289 1.69999 1.05903 1.13498 1.19888 0.75575 0.78692 0.90359 1.90727 1.46090 1.72007 1.29717 1.23215 1.05761 0.99524 0.98082 1.84809 1.90780 0.97989 1.17872 1.22291 1.54198 0.96666 0.93759 0.89342 1.24709 0.93615 0.96728 0.96231 1.69935 1.47030 1.11262 1.23328 0.86736 0.80362 0.80382 0.84381 1.19160 1.19876 1.15946 1.23461 1.00433 0.85732 0.93812 0.91537 0.90312 0.90152 0.90335 0.89917 0.90272 0.90291 0.89640 0.92869 0.92129 0.91467 0.91864 0.84620 0.89865 0.89787 0.88456 0.88441 0.91899 0.89194 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 8.80 59.84 0.53 0.81 16 2 N -0.60 -4.48 3.11 -173.56 -0.54 -5.02 16 3 C 0.51 4.57 4.66 -10.98 -0.05 4.52 16 4 O -0.53 -6.59 13.43 5.56 0.07 -6.52 16 5 C 0.05 0.32 3.45 -67.88 -0.23 0.09 16 6 H 0.11 0.55 5.48 -51.93 -0.28 0.27 16 7 C -0.13 -0.76 6.47 -24.76 -0.16 -0.92 16 8 C -0.13 -0.62 7.08 -24.45 -0.17 -0.80 16 9 C 0.04 0.24 6.73 -2.30 -0.02 0.22 16 10 N -0.51 -3.94 5.44 -232.95 -1.27 -5.21 16 11 C 0.01 0.06 8.24 60.07 0.49 0.55 16 12 C 0.11 0.99 4.59 -67.68 -0.31 0.68 16 13 C 0.09 0.98 8.16 -8.49 -0.07 0.91 16 14 N -0.65 -8.78 3.69 -185.05 -0.68 -9.46 16 15 C 0.57 10.48 8.10 -10.99 -0.09 10.39 16 16 O -0.51 -11.47 16.64 5.55 0.09 -11.38 16 17 C -0.12 -2.28 5.98 36.00 0.22 -2.06 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 23 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 C 0.09 0.85 7.83 -8.36 -0.07 0.78 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.21 6.03 -51.93 -0.31 -0.10 16 30 H 0.08 0.31 6.00 -51.93 -0.31 0.00 16 31 H 0.08 0.60 7.66 -51.93 -0.40 0.21 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.38 7.59 -51.93 -0.39 -0.01 16 37 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.59 6.82 -51.93 -0.35 0.24 16 40 H 0.14 1.49 7.27 -51.93 -0.38 1.12 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.73 7.03 -51.93 -0.36 0.36 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 0.65 6.44 -51.93 -0.33 0.32 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -36.06 383.19 -9.45 -45.51 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.25 Total: -2.65 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 0.28 Total: 3.17 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.72 Total: -45.40 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.06 -9.45 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759951624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.369 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds