Wall clock time and date at job start Wed Apr 1 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00114 * 2 1 4 4 O 1.21274 * 120.00374 * 174.76664 * 3 2 1 5 5 C 1.50701 * 119.99806 * 354.77152 * 3 2 1 6 6 H 1.09001 * 109.88237 * 4.60255 * 5 3 2 7 7 C 1.54322 * 109.88648 * 243.57526 * 5 3 2 8 8 C 1.55400 * 102.89688 * 218.40429 * 7 5 3 9 9 C 1.54903 * 101.74252 * 35.48200 * 8 7 5 10 10 N 1.47439 * 109.89390 * 125.63524 * 5 3 2 11 11 C 1.46902 * 110.99607 * 356.15065 * 10 5 3 12 12 C 1.46503 * 120.00209 * 180.02562 * 2 1 3 13 13 C 1.53498 * 114.20452 * 60.00120 * 12 2 1 14 14 N 1.47069 * 87.98133 * 220.34820 * 13 12 2 15 15 C 1.34780 * 136.05542 * 207.08974 * 14 13 12 16 16 O 1.21285 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00119 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47157 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00055 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99913 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00233 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00213 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99825 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47191 * 90.00159 * 23 21 19 25 25 H 1.48503 * 109.46963 * 210.00088 * 23 21 19 26 26 H 1.48499 * 109.46814 * 329.99901 * 23 21 19 27 27 C 1.47066 * 87.88893 * 27.34066 * 14 13 12 28 28 H 1.09002 * 109.47561 * 274.14360 * 1 2 3 29 29 H 1.09003 * 109.47385 * 34.14947 * 1 2 3 30 30 H 1.09003 * 109.47016 * 154.14307 * 1 2 3 31 31 H 1.08991 * 110.70603 * 336.69062 * 7 5 3 32 32 H 1.09001 * 110.70567 * 99.92543 * 7 5 3 33 33 H 1.08999 * 110.87581 * 277.39160 * 8 7 5 34 34 H 1.09001 * 111.05594 * 153.65160 * 8 7 5 35 35 H 1.08999 * 110.37486 * 204.19155 * 9 8 7 36 36 H 1.09002 * 110.37616 * 81.84412 * 9 8 7 37 37 H 1.08999 * 109.47612 * 71.84973 * 11 10 5 38 38 H 1.09003 * 109.47156 * 191.84773 * 11 10 5 39 39 H 1.08999 * 109.47196 * 311.84280 * 11 10 5 40 40 H 1.08995 * 113.41401 * 193.20454 * 12 2 1 41 41 H 1.08995 * 113.46503 * 105.56602 * 13 12 2 42 42 H 1.09000 * 113.46775 * 335.12193 * 13 12 2 43 43 H 1.08993 * 109.47425 * 59.99658 * 17 15 14 44 44 H 1.09004 * 109.47237 * 299.99114 * 17 15 14 45 45 H 0.97001 * 120.00261 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46194 * 87.43828 * 27 14 13 47 47 H 1.08993 * 113.46801 * 217.87534 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1694 0.0958 5 6 1.3900 2.4696 -0.1189 6 1 0.3164 2.2818 -0.1128 7 6 1.7899 3.1876 -1.4251 8 6 1.8365 4.6815 -0.9994 9 6 2.3760 4.5798 0.4490 10 7 1.7499 3.3592 1.0004 11 6 2.6534 2.6829 1.9408 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1632 -1.2135 14 7 1.9119 -3.3155 -0.2995 15 6 2.1758 -4.6332 -0.4011 16 8 2.5015 -5.1059 -1.4695 17 6 2.0652 -5.5195 0.8126 18 16 2.4784 -7.2217 0.3564 19 6 2.2738 -8.0149 1.9164 20 1 1.9756 -7.4389 2.7800 21 6 2.4959 -9.3798 2.0355 22 7 2.3426 -9.9724 3.2008 23 14 3.0125 -10.3757 0.5420 24 1 4.4944 -10.3945 0.4479 25 1 2.5073 -11.7658 0.6752 26 1 2.4463 -9.7587 -0.6844 27 6 1.4969 -2.3982 0.7725 28 1 -0.3634 0.0743 1.0250 29 1 -0.3634 0.8505 -0.5769 30 1 -0.3633 -0.9248 -0.4482 31 1 2.7703 2.8532 -1.7641 32 1 1.0384 3.0278 -2.1983 33 1 0.8391 5.1209 -1.0147 34 1 2.5201 5.2478 -1.6319 35 1 2.0771 5.4540 1.0275 36 1 3.4615 4.4803 0.4436 37 1 3.6384 2.5771 1.4860 38 1 2.7361 3.2732 2.8534 39 1 2.2562 1.6967 2.1808 40 1 3.2574 -1.1570 0.2280 41 1 2.7159 -2.1833 -1.9426 42 1 0.9334 -1.9748 -1.6680 43 1 1.0458 -5.4840 1.1968 44 1 2.7555 -5.1713 1.5810 45 1 2.4982 -10.9262 3.2842 46 1 0.4165 -2.2717 0.8413 47 1 1.9582 -2.6185 1.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759951624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:17 Heat of formation + Delta-G solvation = -26.327807 kcal Electronic energy + Delta-G solvation = -27453.634201 eV Core-core repulsion = 23571.024149 eV Total energy + Delta-G solvation = -3882.610053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26751 -41.25649 -39.41716 -38.31768 -36.07521 -34.69811 -33.07135 -32.17381 -30.69523 -29.09440 -27.96682 -27.85690 -26.99911 -26.62355 -24.39065 -22.22930 -22.03152 -20.47397 -19.94599 -19.63592 -18.80717 -18.25008 -17.64373 -17.31162 -17.13040 -16.82387 -16.57392 -16.20406 -16.03151 -15.73329 -15.22519 -14.93844 -14.87730 -14.70417 -14.40982 -14.02161 -13.94923 -13.83170 -13.70622 -13.38628 -13.33087 -13.23008 -13.10773 -13.02534 -12.91370 -12.69741 -12.46475 -12.17850 -12.11433 -12.05308 -11.89127 -11.72799 -11.22651 -11.19629 -11.00337 -10.59001 -9.96464 -9.81601 -9.30865 -9.04762 -8.53794 -6.25855 0.86977 1.29886 1.31627 1.34860 1.38612 1.47860 1.68056 2.09642 2.22874 2.62589 2.84267 2.96498 3.16861 3.28274 3.36627 3.65844 3.72126 3.74143 3.93812 4.09238 4.15148 4.19530 4.26992 4.31770 4.34574 4.36347 4.43499 4.49109 4.51764 4.59026 4.68805 4.70970 4.79542 4.83652 4.88295 4.97810 4.99315 5.02570 5.06813 5.25807 5.38867 5.68416 5.79266 5.84993 6.08904 6.19499 6.44176 6.90829 6.92815 6.98806 8.58430 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.001945 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.620892 B =14392.651947 C =14764.474158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.595 5.595 3 C 0.505 3.495 4 O -0.574 6.574 5 C 0.048 3.952 6 H 0.136 0.864 7 C -0.130 4.130 8 C -0.119 4.119 9 C 0.031 3.969 10 N -0.511 5.511 11 C 0.015 3.985 12 C 0.120 3.880 13 C 0.094 3.906 14 N -0.647 5.647 15 C 0.567 3.433 16 O -0.561 6.561 17 C -0.100 4.100 18 S -0.174 6.174 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.914 5.914 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.237 1.237 27 C 0.093 3.907 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.278 0.722 46 H 0.124 0.876 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 33.893 -7.195 35.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.327 5.327 3 C 0.294 3.706 4 O -0.452 6.452 5 C -0.063 4.063 6 H 0.153 0.847 7 C -0.168 4.168 8 C -0.157 4.157 9 C -0.096 4.096 10 N -0.235 5.235 11 C -0.133 4.133 12 C 0.014 3.986 13 C -0.030 4.030 14 N -0.384 5.384 15 C 0.356 3.644 16 O -0.439 6.439 17 C -0.251 4.251 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.552 5.552 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.181 1.181 26 H -0.161 1.161 27 C -0.030 4.030 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.142 0.858 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.293 32.932 -8.315 34.740 hybrid contribution 0.956 -0.870 0.900 1.576 sum -6.336 32.062 -7.415 33.513 Atomic orbital electron populations 1.22324 0.76373 1.05418 1.04291 1.47831 1.08562 1.03944 1.72412 1.21598 0.87740 0.86489 0.74742 1.90703 1.16329 1.87588 1.50626 1.23032 1.02084 0.88240 0.92952 0.84709 1.22836 1.02389 0.95792 0.95807 1.22753 1.03212 0.95234 0.94526 1.23276 0.96922 0.93096 0.96311 1.64186 1.41039 1.05096 1.13226 1.22759 0.95405 0.98487 0.96696 1.22590 0.97989 0.82025 0.96000 1.23594 1.03660 0.80844 0.94888 1.49150 1.68048 1.04914 1.16247 1.19468 0.75811 0.80142 0.88977 1.90703 1.48830 1.73474 1.30929 1.23152 1.06926 0.95824 0.99208 1.84735 1.91242 1.02485 1.16290 1.22419 1.53708 0.97024 0.94506 0.91849 1.25551 0.93671 0.97846 0.98849 1.70009 1.48078 1.12010 1.25127 0.85879 0.80072 0.79551 0.80941 1.18798 1.18101 1.16103 1.23768 1.02464 0.83857 0.92885 0.90267 0.88104 0.89104 0.92749 0.87558 0.88576 0.89541 0.88474 0.94478 0.94573 0.90715 0.92632 0.86873 0.91287 0.86796 0.86705 0.87315 0.91294 0.85783 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 8.80 127.77 1.12 1.37 16 2 N -0.60 -7.44 3.11 -821.41 -2.56 -10.00 16 3 C 0.51 8.46 4.66 87.66 0.41 8.87 16 4 O -0.57 -14.55 13.43 -3.01 -0.04 -14.59 16 5 C 0.05 0.54 3.45 44.51 0.15 0.70 16 6 H 0.14 0.81 5.48 -2.39 -0.01 0.80 16 7 C -0.13 -1.25 6.47 31.87 0.21 -1.05 16 8 C -0.12 -0.90 7.08 32.07 0.23 -0.67 16 9 C 0.03 0.36 6.73 86.77 0.58 0.95 16 10 N -0.51 -7.11 5.44 -890.91 -4.85 -11.96 16 11 C 0.01 0.26 8.24 127.69 1.05 1.31 16 12 C 0.12 2.02 4.59 45.55 0.21 2.23 16 13 C 0.09 1.80 8.16 83.19 0.68 2.48 16 14 N -0.65 -16.43 3.69 -857.77 -3.16 -19.60 16 15 C 0.57 20.58 8.10 87.65 0.71 21.29 16 16 O -0.56 -25.22 16.64 -3.05 -0.05 -25.27 16 17 C -0.10 -3.89 5.98 71.23 0.43 -3.46 16 18 S -0.17 -8.92 18.55 -56.49 -1.05 -9.97 16 19 C -0.53 -30.90 10.04 67.95 0.68 -30.22 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 21 C 0.05 2.73 5.50 84.86 0.47 3.20 16 22 N -0.91 -55.61 13.97 21.65 0.30 -55.31 16 23 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 27 C 0.09 1.50 7.83 83.27 0.65 2.15 16 28 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.10 0.04 6.03 -2.39 -0.01 0.02 16 30 H 0.09 0.25 6.00 -2.39 -0.01 0.24 16 31 H 0.05 0.81 7.66 -2.39 -0.02 0.79 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.04 0.54 7.59 -2.39 -0.02 0.53 16 37 H 0.04 0.81 5.97 -2.39 -0.01 0.79 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.02 6.82 -2.39 -0.02 1.00 16 40 H 0.11 2.51 7.27 -2.39 -0.02 2.49 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 1.57 7.03 -2.39 -0.02 1.56 16 43 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 44 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 45 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.12 1.25 6.44 -2.39 -0.02 1.24 16 47 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -81.04 383.19 -0.99 -82.02 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.94 Total: 8.50 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 7.58 Total: 9.13 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -10.27 Total: -96.86 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.09 Total: -39.86 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -81.04 -0.99 -82.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759951624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.695 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds