Wall clock time and date at job start Wed Apr 1 2020 00:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48502 * 109.46893 * 240.00052 * 3 2 1 5 5 H 1.48493 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46697 * 120.00463 * 3 2 1 7 7 C 1.38947 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00050 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00391 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00368 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.46908 * 110.99888 * 174.70582 * 13 12 10 15 15 C 1.52996 * 115.54747 * 279.56157 * 14 13 12 16 16 N 1.46499 * 109.47419 * 325.02990 * 15 14 13 17 17 C 1.34769 * 120.00428 * 174.86801 * 16 15 14 18 18 O 1.21277 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00418 * 180.02562 * 17 16 15 20 20 O 1.42899 * 109.47615 * 180.02562 * 19 17 16 21 21 C 1.42896 * 114.00254 * 180.02562 * 20 19 17 22 22 H 1.09006 * 110.43656 * 328.90235 * 21 20 19 23 23 C 1.54810 * 110.48924 * 206.22156 * 21 20 19 24 24 C 1.54997 * 102.09338 * 220.43927 * 23 21 20 25 25 O 1.44379 * 103.48773 * 37.02068 * 24 23 21 26 26 C 1.43743 * 106.97586 * 319.93879 * 25 24 23 27 27 C 1.52994 * 117.49746 * 133.85079 * 14 13 12 28 28 C 1.52997 * 117.49654 * 65.22615 * 14 13 12 29 29 H 0.96997 * 119.99982 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00131 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46986 * 59.99920 * 12 10 9 32 32 H 1.09003 * 109.46819 * 300.01089 * 12 10 9 33 33 H 1.00900 * 110.99954 * 298.65340 * 13 12 10 34 34 H 1.09005 * 109.47423 * 85.03383 * 15 14 13 35 35 H 1.09004 * 109.46837 * 205.03292 * 15 14 13 36 36 H 0.97007 * 119.99930 * 354.87017 * 16 15 14 37 37 H 1.08999 * 109.47141 * 300.00576 * 19 17 16 38 38 H 1.09007 * 109.47144 * 59.99721 * 19 17 16 39 39 H 1.09011 * 110.90323 * 338.63835 * 23 21 20 40 40 H 1.08998 * 110.91422 * 102.23577 * 23 21 20 41 41 H 1.08998 * 110.61662 * 278.51696 * 24 23 21 42 42 H 1.09000 * 110.61729 * 155.51795 * 24 23 21 43 43 H 1.08998 * 109.87547 * 267.08978 * 26 25 24 44 44 H 1.09009 * 110.00054 * 146.01100 * 26 25 24 45 45 H 1.08997 * 117.50240 * 359.97438 * 27 14 13 46 46 H 1.09002 * 117.49803 * 145.02548 * 27 14 13 47 47 H 1.08998 * 117.49857 * 214.98003 * 28 14 13 48 48 H 1.08996 * 117.50181 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.5024 -7.2671 0.1233 15 6 1.0840 -7.6549 1.5429 16 7 2.0913 -7.1814 2.4955 17 6 1.8834 -7.3185 3.8200 18 8 0.8627 -7.8345 4.2234 19 6 2.9193 -6.8309 4.7999 20 8 2.4724 -7.0874 6.1327 21 6 3.3865 -6.6602 7.1446 22 1 4.4129 -6.7307 6.7846 23 6 3.2018 -7.5008 8.4314 24 6 3.3380 -6.4284 9.5422 25 8 2.6917 -5.2697 8.9726 26 6 3.0675 -5.2188 7.5861 27 6 1.9245 -8.3936 -0.8219 28 6 0.5821 -7.6880 -1.0242 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6167 -4.9201 -0.8919 32 1 0.6172 -4.9212 0.8880 33 1 2.7766 -5.9604 -0.8293 34 1 0.1215 -7.1992 1.7754 35 1 0.9990 -8.7394 1.6132 36 1 2.9079 -6.7690 2.1729 37 1 3.8594 -7.3541 4.6252 38 1 3.0697 -5.7595 4.6665 39 1 2.2149 -7.9631 8.4558 40 1 3.9848 -8.2540 8.5199 41 1 4.3879 -6.2200 9.7479 42 1 2.8240 -6.7476 10.4489 43 1 3.9495 -4.5900 7.4641 44 1 2.2447 -4.8223 6.9911 45 1 2.7182 -8.1793 -1.5376 46 1 1.9043 -9.4115 -0.4325 47 1 -0.3211 -8.2415 -0.7678 48 1 0.4926 -7.0093 -1.8724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277060607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:16 Heat of formation + Delta-G solvation = -127.527049 kcal Electronic energy + Delta-G solvation = -29647.414618 eV Core-core repulsion = 25317.663366 eV Total energy + Delta-G solvation = -4329.751252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14928 -39.63466 -38.79289 -37.81870 -37.01903 -34.17113 -34.03096 -32.63018 -31.74622 -31.23117 -29.44201 -28.55949 -26.68880 -25.95851 -24.15169 -23.02987 -22.59336 -21.59623 -20.49845 -19.86206 -19.25608 -17.92727 -17.61517 -17.41120 -16.81948 -16.35870 -16.15134 -15.90489 -15.61952 -15.46360 -15.17486 -14.78082 -14.51629 -14.27797 -14.22100 -13.95935 -13.76295 -13.40491 -13.19032 -12.88254 -12.65082 -12.51222 -12.46116 -12.23541 -11.95022 -11.76705 -11.72404 -11.60247 -11.50283 -11.10975 -11.06216 -10.87965 -10.47781 -10.28218 -10.20316 -10.19406 -9.78862 -9.69901 -9.54373 -8.98060 -8.56307 -8.21660 -8.01323 -6.45603 -3.87051 2.61575 2.68478 3.16802 3.23470 3.26840 3.44754 3.64089 3.81805 3.84604 3.95005 4.18809 4.20166 4.49444 4.55225 4.60400 4.65591 4.70016 4.81778 4.83540 4.95224 5.05203 5.08085 5.09709 5.20518 5.26940 5.36571 5.40961 5.44764 5.48477 5.58127 5.62835 5.65010 5.69648 5.69946 5.79137 5.91260 5.91579 6.19023 6.42962 6.52634 6.82717 7.03008 7.43865 7.50763 7.60982 8.00760 8.26895 8.55742 9.12950 9.49112 9.99712 10.71851 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.006965 B = 0.002986 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4018.960826 B = 9375.761587 C =12754.366494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.053 3.947 13 N -0.629 5.629 14 C 0.035 3.965 15 C 0.174 3.826 16 N -0.709 5.709 17 C 0.514 3.486 18 O -0.531 6.531 19 C 0.040 3.960 20 O -0.348 6.348 21 C 0.054 3.946 22 H 0.080 0.920 23 C -0.152 4.152 24 C 0.046 3.954 25 O -0.372 6.372 26 C 0.022 3.978 27 C -0.169 4.169 28 C -0.204 4.204 29 H 0.273 0.727 30 H 0.392 0.608 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.354 0.646 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 -17.321 8.316 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.225 3.775 11 O -0.470 6.470 12 C -0.079 4.079 13 N -0.260 5.260 14 C -0.058 4.058 15 C 0.049 3.951 16 N -0.364 5.364 17 C 0.298 3.702 18 O -0.407 6.407 19 C -0.040 4.040 20 O -0.266 6.266 21 C -0.005 4.005 22 H 0.098 0.902 23 C -0.189 4.189 24 C -0.030 4.030 25 O -0.291 6.291 26 C -0.056 4.056 27 C -0.207 4.207 28 C -0.243 4.243 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.068 -17.372 9.435 20.408 hybrid contribution 0.147 1.043 -1.428 1.774 sum 5.215 -16.329 8.007 18.919 Atomic orbital electron populations 1.69601 1.05961 1.28383 1.50139 1.25272 0.95627 0.99766 0.97172 0.85919 0.78787 0.80458 0.79070 1.19907 1.20934 1.19845 1.19637 0.93305 0.82193 1.47993 0.87959 1.41857 1.09242 1.04607 1.64022 1.19749 0.88355 0.84614 0.84775 1.90517 1.13641 1.87090 1.55725 1.21664 0.94196 0.90468 1.01597 1.59713 1.20940 0.98423 1.46966 1.21901 1.01244 0.91456 0.91203 1.20667 0.91692 0.98531 0.84189 1.45667 1.23917 1.62311 1.04518 1.20129 0.87657 0.79424 0.82947 1.90718 1.28073 1.43219 1.78686 1.22301 0.96518 1.01787 0.83359 1.88094 1.43815 1.82107 1.12549 1.23615 0.93506 0.93878 0.89458 0.90214 1.23217 1.04689 0.98453 0.92576 1.23550 0.97896 0.84703 0.96875 1.88923 1.71251 1.46652 1.22256 1.23798 1.01665 0.96480 0.83614 1.23324 0.98410 0.96952 1.01967 1.23543 0.94907 1.04558 1.01340 0.91725 0.77448 0.93479 0.89570 0.82528 0.90951 0.91124 0.74700 0.90082 0.89628 0.88836 0.89456 0.91945 0.88511 0.91501 0.88531 0.88309 0.88051 0.88237 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 9.84 7.83 -10.99 -0.09 9.75 16 11 O -0.59 -14.90 15.89 5.54 0.09 -14.81 16 12 C 0.05 0.87 5.95 -4.98 -0.03 0.84 16 13 N -0.63 -8.78 5.16 -101.22 -0.52 -9.31 16 14 C 0.04 0.39 2.12 -131.60 -0.28 0.11 16 15 C 0.17 2.06 5.73 -4.04 -0.02 2.04 16 16 N -0.71 -8.79 5.40 -60.30 -0.33 -9.11 16 17 C 0.51 7.20 7.91 -10.99 -0.09 7.11 16 18 O -0.53 -9.55 16.49 -14.35 -0.24 -9.79 16 19 C 0.04 0.45 6.28 36.01 0.23 0.68 16 20 O -0.35 -4.48 9.49 -55.14 -0.52 -5.00 16 21 C 0.05 0.52 3.51 -25.21 -0.09 0.44 16 22 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 23 C -0.15 -1.26 6.90 -24.72 -0.17 -1.43 16 24 C 0.05 0.38 7.72 38.21 0.29 0.67 16 25 O -0.37 -4.49 11.52 -35.23 -0.41 -4.89 16 26 C 0.02 0.23 7.52 37.73 0.28 0.52 16 27 C -0.17 -1.51 9.87 -26.73 -0.26 -1.77 16 28 C -0.20 -1.96 9.67 -26.73 -0.26 -2.22 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 31 H 0.05 0.71 7.64 -51.93 -0.40 0.32 16 32 H 0.09 1.40 8.00 -51.93 -0.42 0.99 16 33 H 0.35 5.05 8.39 -39.29 -0.33 4.72 16 34 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 35 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.42 4.96 7.75 -40.82 -0.32 4.64 16 37 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.09 0.91 8.09 -51.92 -0.42 0.49 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.17 7.97 -51.92 -0.41 0.75 16 45 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -34.02 405.42 -8.47 -42.49 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -7.57 Total: 17.14 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.72 Total: 8.89 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.18 Total: -55.86 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.08 Total: -34.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.02 -8.47 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277060607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.041 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds