Wall clock time and date at job start Wed Apr 1 2020 00:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00325 * 2 1 4 4 H 1.48498 * 109.47088 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.46839 * 30.00335 * 3 2 1 6 6 H 1.48501 * 109.46867 * 150.00200 * 3 2 1 7 7 C 1.38953 * 119.99522 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99798 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00241 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99888 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00479 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47331 * 181.33155 * 12 10 9 14 14 C 1.46899 * 111.00124 * 162.31587 * 13 12 10 15 15 C 1.52994 * 109.47301 * 189.99959 * 14 13 12 16 16 N 1.46504 * 109.47428 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00517 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.50688 * 120.00167 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.52996 * 304.99853 * 19 17 16 21 21 C 1.53143 * 109.57839 * 65.16118 * 19 17 16 22 22 O 1.43086 * 109.15180 * 175.24414 * 21 19 17 23 23 C 1.43072 * 113.59198 * 302.05345 * 22 21 19 24 24 C 1.53134 * 109.15711 * 57.94936 * 23 22 21 25 25 O 1.43073 * 109.52470 * 184.86803 * 19 17 16 26 26 C 1.46905 * 111.00049 * 286.26806 * 13 12 10 27 27 C 1.52999 * 117.49867 * 3.78711 * 26 13 12 28 28 C 1.52994 * 117.50074 * 295.12596 * 26 13 12 29 29 H 0.97005 * 119.99667 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99921 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46566 * 61.33198 * 12 10 9 32 32 H 1.08993 * 109.47005 * 301.33414 * 12 10 9 33 33 H 1.08999 * 109.47186 * 70.00172 * 14 13 12 34 34 H 1.09003 * 109.46949 * 310.00030 * 14 13 12 35 35 H 1.09004 * 109.47226 * 60.00216 * 15 14 13 36 36 H 1.09002 * 109.47697 * 299.99930 * 15 14 13 37 37 H 0.97004 * 119.99439 * 359.97438 * 16 15 14 38 38 H 1.08994 * 109.52747 * 295.14706 * 21 19 17 39 39 H 1.09002 * 109.52532 * 55.34796 * 21 19 17 40 40 H 1.09002 * 109.52018 * 298.04583 * 23 22 21 41 41 H 1.09004 * 109.57740 * 177.89008 * 23 22 21 42 42 H 1.08994 * 109.52901 * 184.78746 * 24 23 22 43 43 H 1.09002 * 109.52528 * 64.58565 * 24 23 22 44 44 H 1.09003 * 115.54639 * 149.45397 * 26 13 12 45 45 H 1.08999 * 117.49817 * 359.97438 * 27 26 13 46 46 H 1.09001 * 117.49747 * 145.02199 * 27 26 13 47 47 H 1.09001 * 117.50064 * 214.97798 * 28 26 13 48 48 H 1.09003 * 117.49733 * 359.97438 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6525 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2434 -4.8630 0.0011 13 7 2.1976 -5.9794 0.0332 14 6 1.5383 -7.2236 0.4516 15 6 2.5957 -8.2979 0.7139 16 7 1.9382 -9.5386 1.1318 17 6 2.6765 -10.6289 1.4190 18 8 3.8853 -10.5831 1.3311 19 6 2.0002 -11.9049 1.8494 20 1 1.3604 -11.7061 2.7092 21 6 1.1529 -12.4508 0.6964 22 8 0.6045 -13.7169 1.0753 23 6 1.5948 -14.6866 1.4303 24 6 2.4420 -14.1408 2.5832 25 8 2.9904 -12.8747 2.2043 26 6 2.8576 -6.1454 -1.2687 27 6 2.5312 -5.1255 -2.3614 28 6 1.9838 -6.5517 -2.4570 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 0.0005 31 1 0.6345 -4.9312 -0.9004 32 1 0.5993 -4.9102 0.8791 33 1 0.8654 -7.5611 -0.3366 34 1 0.9687 -7.0441 1.3635 35 1 3.2687 -7.9605 1.5022 36 1 3.1653 -8.4775 -0.1979 37 1 0.9714 -9.5751 1.2024 38 1 0.3437 -11.7542 0.4774 39 1 1.7778 -12.5745 -0.1881 40 1 2.2345 -14.8855 0.5705 41 1 1.1065 -15.6099 1.7423 42 1 3.2512 -14.8374 2.8023 43 1 1.8171 -14.0171 3.4677 44 1 3.8739 -6.5379 -1.2339 45 1 1.8264 -4.3315 -2.1144 46 1 3.3327 -4.8472 -3.0458 47 1 2.4253 -7.2111 -3.2043 48 1 0.9192 -6.6963 -2.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:43 Heat of formation + Delta-G solvation = -107.557305 kcal Electronic energy + Delta-G solvation = -29774.642667 eV Core-core repulsion = 25445.757368 eV Total energy + Delta-G solvation = -4328.885299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88370 -39.69578 -39.11733 -37.32531 -36.52925 -35.32794 -33.87298 -33.34687 -32.26731 -31.20946 -29.73699 -28.42965 -26.44849 -25.40920 -24.24275 -23.35401 -22.28408 -21.90287 -20.84624 -20.10503 -18.84243 -18.00986 -17.78546 -17.47572 -17.09967 -16.82275 -16.51581 -16.07373 -15.89334 -15.76166 -15.26835 -15.16106 -14.57685 -14.40976 -14.12484 -13.96024 -13.78960 -13.58525 -13.42191 -13.24068 -12.83852 -12.63958 -12.34272 -12.14536 -11.94730 -11.55484 -11.50332 -11.36142 -11.23537 -11.12796 -11.02078 -10.98726 -10.46195 -10.38445 -10.20422 -10.10172 -9.90714 -9.71218 -9.46056 -9.31291 -8.49623 -7.95122 -7.90934 -6.40207 -3.80619 2.24591 2.36562 3.11632 3.18688 3.27328 3.33066 3.41526 3.85119 3.94789 3.98868 4.05616 4.22537 4.31772 4.35500 4.42775 4.56107 4.66357 4.73112 4.88081 4.93691 5.02183 5.09230 5.11242 5.14409 5.17688 5.19370 5.22408 5.26952 5.37863 5.64369 5.73903 5.78806 5.84235 5.92376 6.06414 6.20343 6.25614 6.29367 6.34566 6.40101 6.45819 7.07217 7.17247 7.22534 7.56898 7.89564 8.07786 8.64057 9.20636 9.56217 10.08909 10.77703 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.001797 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.214000 B =15573.661248 C =15674.302342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.569 5.569 10 C 0.447 3.553 11 O -0.567 6.567 12 C 0.039 3.961 13 N -0.480 5.480 14 C 0.047 3.953 15 C 0.126 3.874 16 N -0.725 5.725 17 C 0.521 3.479 18 O -0.510 6.510 19 C 0.038 3.962 20 H 0.096 0.904 21 C 0.037 3.963 22 O -0.373 6.373 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.350 6.350 26 C 0.042 3.958 27 C -0.166 4.166 28 C -0.228 4.228 29 H 0.270 0.730 30 H 0.390 0.610 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -26.865 1.183 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.207 5.207 10 C 0.232 3.768 11 O -0.449 6.449 12 C -0.092 4.092 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.002 3.998 16 N -0.379 5.379 17 C 0.305 3.695 18 O -0.383 6.383 19 C -0.024 4.024 20 H 0.113 0.887 21 C -0.040 4.040 22 O -0.292 6.292 23 C -0.057 4.057 24 C -0.054 4.054 25 O -0.268 6.268 26 C -0.067 4.067 27 C -0.203 4.203 28 C -0.267 4.267 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.232 -26.544 1.496 26.679 hybrid contribution -1.416 0.698 -0.517 1.661 sum -3.647 -25.846 0.979 26.120 Atomic orbital electron populations 1.69612 1.05899 1.28040 1.51000 1.25236 0.95622 0.99639 0.97515 0.85875 0.79265 0.80933 0.78330 1.20491 1.20991 1.19440 1.19677 0.93321 0.82167 1.47341 0.87946 1.41853 1.09068 1.04533 1.65204 1.19591 0.88510 0.84288 0.84408 1.90549 1.13441 1.86768 1.54133 1.22014 0.93945 0.91631 1.01652 1.61447 1.29879 1.02171 1.26730 1.22248 0.95255 0.90049 1.00615 1.21310 0.95396 0.81565 1.01501 1.45827 1.10421 1.11727 1.69917 1.19829 0.87690 0.83977 0.78050 1.90774 1.13733 1.83735 1.50105 1.22580 0.91178 0.89263 0.99373 0.88686 1.23151 0.98548 0.86534 0.95773 1.88128 1.32129 1.21415 1.87492 1.23335 0.91959 0.92487 0.97904 1.23365 0.99330 0.85803 0.96896 1.88252 1.30173 1.20999 1.87367 1.22625 0.97958 1.03492 0.82659 1.23255 1.03632 0.92248 1.01139 1.23483 0.99907 0.99785 1.03538 0.91970 0.77660 0.92743 0.89422 0.94013 0.90093 0.90030 0.90835 0.76658 0.87019 0.91233 0.91706 0.87311 0.87049 0.91730 0.86031 0.87831 0.88592 0.88901 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C 0.45 10.17 5.84 -10.99 -0.06 10.10 16 11 O -0.57 -14.95 14.79 5.54 0.08 -14.87 16 12 C 0.04 0.65 5.00 -4.98 -0.02 0.63 16 13 N -0.48 -7.42 4.34 -228.09 -0.99 -8.41 16 14 C 0.05 0.51 4.96 -3.83 -0.02 0.49 16 15 C 0.13 1.41 5.67 -4.04 -0.02 1.38 16 16 N -0.72 -6.27 5.52 -60.30 -0.33 -6.60 16 17 C 0.52 5.80 7.18 -10.99 -0.08 5.72 16 18 O -0.51 -8.24 16.51 -14.27 -0.24 -8.47 16 19 C 0.04 0.32 3.25 -27.81 -0.09 0.23 16 20 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 21 C 0.04 0.26 6.30 37.23 0.23 0.49 16 22 O -0.37 -2.85 10.85 -48.80 -0.53 -3.38 16 23 C 0.02 0.11 7.05 37.23 0.26 0.38 16 24 C 0.02 0.14 7.05 37.23 0.26 0.41 16 25 O -0.35 -3.66 10.03 -62.51 -0.63 -4.29 16 26 C 0.04 0.63 4.55 -67.71 -0.31 0.32 16 27 C -0.17 -2.67 8.48 -26.69 -0.23 -2.90 16 28 C -0.23 -2.88 9.27 -26.70 -0.25 -3.12 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 31 H 0.05 0.84 5.99 -51.93 -0.31 0.53 16 32 H 0.09 1.31 7.77 -51.93 -0.40 0.90 16 33 H 0.04 0.39 6.87 -51.93 -0.36 0.04 16 34 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.90 7.30 -51.93 -0.38 0.53 16 37 H 0.40 2.08 8.40 -40.82 -0.34 1.73 16 38 H 0.11 0.49 8.07 -51.93 -0.42 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.12 1.86 8.03 -51.93 -0.42 1.44 16 45 H 0.10 1.91 4.91 -51.93 -0.26 1.65 16 46 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.09 1.03 7.15 -51.93 -0.37 0.66 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -35.42 390.02 -8.98 -44.40 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.30 Total: 11.11 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.56 Total: 6.34 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.66 Total: -52.69 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.31 Total: -31.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.42 -8.98 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.162 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds