Wall clock time and date at job start Wed Apr 1 2020 00:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00325 * 2 1 4 4 H 1.48498 * 109.47088 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.46839 * 30.00335 * 3 2 1 6 6 H 1.48501 * 109.46867 * 150.00200 * 3 2 1 7 7 C 1.38953 * 119.99522 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99798 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00241 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99888 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00479 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47331 * 181.33155 * 12 10 9 14 14 C 1.46899 * 111.00124 * 162.31587 * 13 12 10 15 15 C 1.52994 * 109.47301 * 189.99959 * 14 13 12 16 16 N 1.46504 * 109.47428 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00517 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.50688 * 120.00167 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.52996 * 304.99853 * 19 17 16 21 21 C 1.53143 * 109.57839 * 65.16118 * 19 17 16 22 22 O 1.43086 * 109.15180 * 175.24414 * 21 19 17 23 23 C 1.43072 * 113.59198 * 302.05345 * 22 21 19 24 24 C 1.53134 * 109.15711 * 57.94936 * 23 22 21 25 25 O 1.43073 * 109.52470 * 184.86803 * 19 17 16 26 26 C 1.46905 * 111.00049 * 286.26806 * 13 12 10 27 27 C 1.52999 * 117.49867 * 3.78711 * 26 13 12 28 28 C 1.52994 * 117.50074 * 295.12596 * 26 13 12 29 29 H 0.97005 * 119.99667 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99921 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46566 * 61.33198 * 12 10 9 32 32 H 1.08993 * 109.47005 * 301.33414 * 12 10 9 33 33 H 1.08999 * 109.47186 * 70.00172 * 14 13 12 34 34 H 1.09003 * 109.46949 * 310.00030 * 14 13 12 35 35 H 1.09004 * 109.47226 * 60.00216 * 15 14 13 36 36 H 1.09002 * 109.47697 * 299.99930 * 15 14 13 37 37 H 0.97004 * 119.99439 * 359.97438 * 16 15 14 38 38 H 1.08994 * 109.52747 * 295.14706 * 21 19 17 39 39 H 1.09002 * 109.52532 * 55.34796 * 21 19 17 40 40 H 1.09002 * 109.52018 * 298.04583 * 23 22 21 41 41 H 1.09004 * 109.57740 * 177.89008 * 23 22 21 42 42 H 1.08994 * 109.52901 * 184.78746 * 24 23 22 43 43 H 1.09002 * 109.52528 * 64.58565 * 24 23 22 44 44 H 1.09003 * 115.54639 * 149.45397 * 26 13 12 45 45 H 1.08999 * 117.49817 * 359.97438 * 27 26 13 46 46 H 1.09001 * 117.49747 * 145.02199 * 27 26 13 47 47 H 1.09001 * 117.50064 * 214.97798 * 28 26 13 48 48 H 1.09003 * 117.49733 * 359.97438 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6525 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2434 -4.8630 0.0011 13 7 2.1976 -5.9794 0.0332 14 6 1.5383 -7.2236 0.4516 15 6 2.5957 -8.2979 0.7139 16 7 1.9382 -9.5386 1.1318 17 6 2.6765 -10.6289 1.4190 18 8 3.8853 -10.5831 1.3311 19 6 2.0002 -11.9049 1.8494 20 1 1.3604 -11.7061 2.7092 21 6 1.1529 -12.4508 0.6964 22 8 0.6045 -13.7169 1.0753 23 6 1.5948 -14.6866 1.4303 24 6 2.4420 -14.1408 2.5832 25 8 2.9904 -12.8747 2.2043 26 6 2.8576 -6.1454 -1.2687 27 6 2.5312 -5.1255 -2.3614 28 6 1.9838 -6.5517 -2.4570 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 0.0005 31 1 0.6345 -4.9312 -0.9004 32 1 0.5993 -4.9102 0.8791 33 1 0.8654 -7.5611 -0.3366 34 1 0.9687 -7.0441 1.3635 35 1 3.2687 -7.9605 1.5022 36 1 3.1653 -8.4775 -0.1979 37 1 0.9714 -9.5751 1.2024 38 1 0.3437 -11.7542 0.4774 39 1 1.7778 -12.5745 -0.1881 40 1 2.2345 -14.8855 0.5705 41 1 1.1065 -15.6099 1.7423 42 1 3.2512 -14.8374 2.8023 43 1 1.8171 -14.0171 3.4677 44 1 3.8739 -6.5379 -1.2339 45 1 1.8264 -4.3315 -2.1144 46 1 3.3327 -4.8472 -3.0458 47 1 2.4253 -7.2111 -3.2043 48 1 0.9192 -6.6963 -2.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:42 Heat of formation + Delta-G solvation = -136.458401 kcal Electronic energy + Delta-G solvation = -29775.895912 eV Core-core repulsion = 25445.757368 eV Total energy + Delta-G solvation = -4330.138544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58479 -40.97269 -39.99272 -38.94521 -37.13391 -36.29562 -35.84196 -34.43075 -33.22559 -32.89187 -30.74224 -29.19509 -27.76229 -26.22044 -25.81149 -24.28738 -23.08806 -22.85850 -21.68411 -21.46883 -20.43066 -19.68779 -18.76170 -18.16203 -18.08203 -17.66208 -17.56001 -17.03529 -16.90223 -16.53768 -16.42043 -16.09920 -16.02845 -15.65545 -15.47042 -15.10045 -14.86636 -14.81448 -14.45479 -14.16017 -14.05788 -13.57523 -13.46660 -13.26455 -13.15857 -13.01305 -12.71637 -12.63147 -12.38687 -12.28509 -12.14328 -12.09270 -11.93488 -11.65094 -11.59188 -11.45881 -11.06364 -10.91427 -10.32061 -10.26510 -10.17313 -9.94551 -9.16597 -8.43005 -5.90301 1.38546 1.40799 1.41987 1.53923 1.61594 2.13021 2.30195 2.63277 2.66602 2.89821 2.99110 3.23766 3.40727 3.43739 3.64626 3.74717 3.84693 3.95791 3.97094 3.99196 4.04465 4.12881 4.15767 4.25421 4.32214 4.41021 4.48270 4.52260 4.54927 4.57435 4.73592 4.78581 4.80627 4.90150 4.97283 4.98080 5.16632 5.18369 5.28599 5.44637 5.84817 5.86248 5.87854 6.08697 6.14602 6.44870 6.66516 7.12204 7.18991 7.63281 8.20865 8.74460 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.001797 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.214000 B =15573.661248 C =15674.302342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.326 4.326 8 H 0.076 0.924 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.609 6.609 12 C 0.054 3.946 13 N -0.505 5.505 14 C 0.053 3.947 15 C 0.134 3.866 16 N -0.703 5.703 17 C 0.519 3.481 18 O -0.570 6.570 19 C 0.042 3.958 20 H 0.119 0.881 21 C 0.041 3.959 22 O -0.383 6.383 23 C 0.017 3.983 24 C 0.019 3.981 25 O -0.388 6.388 26 C 0.030 3.970 27 C -0.196 4.196 28 C -0.183 4.183 29 H 0.276 0.724 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.141 0.859 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -28.504 1.232 29.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.094 0.906 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.077 4.077 13 N -0.228 5.228 14 C -0.074 4.074 15 C 0.010 3.990 16 N -0.358 5.358 17 C 0.305 3.695 18 O -0.447 6.447 19 C -0.020 4.020 20 H 0.136 0.864 21 C -0.036 4.036 22 O -0.302 6.302 23 C -0.059 4.059 24 C -0.058 4.058 25 O -0.307 6.307 26 C -0.079 4.079 27 C -0.233 4.233 28 C -0.222 4.222 29 H 0.085 0.915 30 H 0.228 0.772 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.259 0.741 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.131 0.869 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.806 -28.207 1.546 28.655 hybrid contribution -0.589 1.124 -0.516 1.370 sum -5.394 -27.082 1.030 27.633 Atomic orbital electron populations 1.69665 1.06639 1.29031 1.50935 1.25942 0.96517 1.02127 0.96712 0.84995 0.77879 0.77367 0.78511 1.19810 1.19608 1.20078 1.19586 0.92517 0.84084 1.49410 0.90633 1.41903 1.09169 1.04600 1.66109 1.20677 0.88353 0.85755 0.81713 1.90519 1.15711 1.87724 1.55363 1.21822 0.93477 0.88641 1.03787 1.61284 1.30610 1.03702 1.27179 1.22277 0.95048 0.87778 1.02270 1.21040 0.95377 0.82614 0.99979 1.45579 1.11370 1.10276 1.68560 1.20411 0.87085 0.85113 0.76902 1.90748 1.16389 1.84777 1.52834 1.22650 0.90776 0.87693 1.00850 0.86365 1.23215 0.98995 0.86972 0.94430 1.88116 1.32835 1.21730 1.87488 1.23487 0.91854 0.92997 0.97551 1.23596 1.00109 0.84536 0.97513 1.88202 1.32044 1.22663 1.87777 1.22586 0.98531 1.03445 0.83314 1.23160 1.03909 0.93627 1.02618 1.23522 1.00545 0.96574 1.01566 0.91480 0.77154 0.90691 0.86812 0.91112 0.88201 0.92882 0.92063 0.74118 0.84153 0.92348 0.92137 0.84808 0.85776 0.90583 0.87065 0.90326 0.89550 0.86882 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.09 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 8 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 9 N -0.58 -29.12 5.29 -306.99 -1.62 -30.74 16 10 C 0.45 20.67 5.84 87.66 0.51 21.18 16 11 O -0.61 -33.29 14.79 -3.08 -0.05 -33.33 16 12 C 0.05 1.72 5.00 85.56 0.43 2.15 16 13 N -0.50 -14.91 4.34 -875.53 -3.80 -18.71 16 14 C 0.05 1.01 4.96 86.30 0.43 1.44 16 15 C 0.13 2.84 5.67 86.38 0.49 3.33 16 16 N -0.70 -10.66 5.52 -463.06 -2.56 -13.21 16 17 C 0.52 11.12 7.18 87.65 0.63 11.75 16 18 O -0.57 -18.91 16.51 15.90 0.26 -18.65 16 19 C 0.04 0.64 3.25 29.89 0.10 0.73 16 20 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 21 C 0.04 0.47 6.30 72.03 0.45 0.92 16 22 O -0.38 -4.87 10.85 -136.01 -1.48 -6.35 16 23 C 0.02 0.16 7.05 72.03 0.51 0.67 16 24 C 0.02 0.20 7.05 72.03 0.51 0.71 16 25 O -0.39 -7.86 10.03 -122.90 -1.23 -9.09 16 26 C 0.03 0.89 4.55 44.91 0.20 1.10 16 27 C -0.20 -6.32 8.48 30.62 0.26 -6.06 16 28 C -0.18 -4.13 9.27 30.62 0.28 -3.85 16 29 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 30 H 0.39 18.77 7.90 -92.70 -0.73 18.04 16 31 H 0.08 2.12 5.99 -2.38 -0.01 2.11 16 32 H 0.11 3.06 7.77 -2.39 -0.02 3.04 16 33 H 0.07 0.98 6.87 -2.39 -0.02 0.97 16 34 H 0.10 1.55 7.85 -2.39 -0.02 1.54 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.47 7.30 -2.39 -0.02 1.46 16 37 H 0.42 2.78 8.40 -92.71 -0.78 2.00 16 38 H 0.14 0.69 8.07 -2.39 -0.02 0.67 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.11 3.48 8.03 -2.39 -0.02 3.46 16 45 H 0.08 2.94 4.91 -2.39 -0.01 2.92 16 46 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.11 2.03 7.15 -2.39 -0.02 2.01 16 Total: -1.00 -81.11 390.02 -2.59 -83.70 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.51 Total: 33.97 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.08 Total: 16.19 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -7.70 Total: -111.76 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -2.49 Total: -67.42 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -81.11 -2.59 -83.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.754 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds