Wall clock time and date at job start Wed Apr 1 2020 00:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47550 * 270.00426 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00367 * 3 2 1 6 6 H 1.48506 * 109.47077 * 150.00186 * 3 2 1 7 7 C 1.38950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00556 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99559 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00233 * 180.27486 * 10 9 7 13 13 N 1.46898 * 109.46987 * 174.08729 * 12 10 9 14 14 C 1.46900 * 110.99930 * 288.32687 * 13 12 10 15 15 C 1.52998 * 109.47148 * 170.00339 * 14 13 12 16 16 N 1.46500 * 109.46948 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99577 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00210 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99796 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.52867 * 54.86291 * 19 17 16 21 21 C 1.53153 * 109.52309 * 294.67103 * 19 17 16 22 22 O 1.43066 * 109.15096 * 184.78652 * 21 19 17 23 23 C 1.43081 * 113.59448 * 57.95242 * 22 21 19 24 24 C 1.53140 * 109.14806 * 302.04800 * 23 22 21 25 25 O 1.43070 * 109.15379 * 55.31478 * 24 23 22 26 26 C 1.46902 * 111.00044 * 164.37625 * 13 12 10 27 27 C 1.53004 * 117.49761 * 6.94560 * 26 13 12 28 28 C 1.52996 * 59.99880 * 252.50921 * 27 26 13 29 29 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 30 30 H 0.97010 * 119.99627 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47251 * 294.08767 * 12 10 9 32 32 H 1.08998 * 109.46901 * 54.08459 * 12 10 9 33 33 H 1.08998 * 109.47249 * 290.00331 * 14 13 12 34 34 H 1.09003 * 109.46849 * 50.00234 * 14 13 12 35 35 H 1.09006 * 109.46990 * 299.99754 * 15 14 13 36 36 H 1.08995 * 109.47576 * 60.00018 * 15 14 13 37 37 H 0.96994 * 120.00505 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.51831 * 304.69131 * 21 19 17 39 39 H 1.08998 * 109.52356 * 64.88173 * 21 19 17 40 40 H 1.09003 * 109.52633 * 182.14511 * 23 22 21 41 41 H 1.08997 * 109.52295 * 61.95135 * 23 22 21 42 42 H 1.09001 * 109.52613 * 295.40255 * 24 23 22 43 43 H 1.09006 * 109.52306 * 175.21223 * 24 23 22 44 44 H 1.08998 * 115.55299 * 152.64728 * 26 13 12 45 45 H 1.09001 * 117.49852 * 359.97438 * 27 26 13 46 46 H 1.09000 * 117.50155 * 145.02203 * 27 26 13 47 47 H 1.08999 * 117.49914 * 252.50799 * 28 27 26 48 48 H 1.09008 * 117.51679 * 107.48027 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5607 -2.3707 0.0046 13 7 6.0497 -3.7487 0.1461 14 6 5.8135 -4.2541 1.5050 15 6 6.1019 -5.7561 1.5478 16 7 5.8657 -6.2603 2.9029 17 6 6.0565 -7.5657 3.1789 18 8 6.4232 -8.3229 2.3055 19 6 5.8130 -8.0845 4.5727 20 1 4.8018 -7.8253 4.8864 21 6 6.8255 -7.4582 5.5361 22 8 6.6603 -8.0388 6.8332 23 6 6.8159 -9.4610 6.8481 24 6 5.8035 -10.0872 5.8847 25 8 5.9687 -9.5067 4.5876 26 6 7.4718 -3.8418 -0.2103 27 6 8.2169 -2.5351 -0.4903 28 6 7.8663 -3.4780 -1.6431 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3634 -0.0007 31 1 5.9276 -1.9493 -0.9313 32 1 5.9208 -1.7697 0.8396 33 1 6.4712 -3.7378 2.2042 34 1 4.7749 -4.0755 1.7837 35 1 5.4441 -6.2724 0.8486 36 1 7.1404 -5.9348 1.2692 37 1 5.5720 -5.6548 3.6014 38 1 7.8366 -7.6500 5.1771 39 1 6.6563 -6.3830 5.5940 40 1 6.6398 -9.8363 7.8562 41 1 7.8268 -9.7202 6.5333 42 1 4.7923 -9.8955 6.2437 43 1 5.9727 -11.1625 5.8268 44 1 8.0269 -4.6437 0.2763 45 1 7.6519 -1.6065 -0.4105 46 1 9.2625 -2.4772 -0.1878 47 1 8.6811 -4.0403 -2.0990 48 1 7.0705 -3.1699 -2.3214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:46 Heat of formation + Delta-G solvation = -104.673785 kcal Electronic energy + Delta-G solvation = -29949.719649 eV Core-core repulsion = 25620.959389 eV Total energy + Delta-G solvation = -4328.760260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78712 -39.60579 -39.01439 -37.69241 -36.45304 -35.38615 -34.11449 -33.37972 -32.20811 -31.70423 -29.73601 -28.39505 -26.57099 -25.34265 -24.18642 -23.02787 -22.38454 -22.12590 -20.73761 -20.31071 -19.23893 -18.32475 -17.90006 -17.39947 -16.97414 -16.75274 -16.43002 -16.14001 -15.79386 -15.49263 -15.25498 -15.16894 -14.84596 -14.42376 -14.22206 -14.06777 -13.75065 -13.44988 -13.33039 -13.08050 -12.81001 -12.71190 -12.58023 -12.30143 -12.06308 -11.94873 -11.49842 -11.47167 -11.29370 -11.24919 -11.11428 -11.04018 -10.74140 -10.62962 -10.37221 -10.00997 -9.98491 -9.62227 -9.58978 -9.19130 -8.57799 -8.21540 -7.98170 -6.34354 -3.85982 2.34215 2.47815 2.98349 3.03579 3.12058 3.20166 3.44314 3.68229 3.73262 3.93854 4.06296 4.06951 4.38633 4.45417 4.51528 4.65295 4.67032 4.70691 4.77390 4.84538 4.94197 4.97258 5.07254 5.10378 5.14120 5.20520 5.27628 5.30693 5.43696 5.49725 5.58274 5.60498 5.80178 5.84286 5.93751 6.01701 6.06848 6.11529 6.22317 6.43030 6.49901 6.98076 7.15018 7.26885 7.54439 7.99866 8.10552 8.56421 8.91843 9.38673 9.79184 10.78700 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002387 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.208331 B =11727.159625 C =13173.454207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.556 6.556 12 C 0.040 3.960 13 N -0.477 5.477 14 C 0.049 3.951 15 C 0.127 3.873 16 N -0.723 5.723 17 C 0.522 3.478 18 O -0.514 6.514 19 C 0.037 3.963 20 H 0.097 0.903 21 C 0.038 3.962 22 O -0.373 6.373 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.350 6.350 26 C 0.019 3.981 27 C -0.224 4.224 28 C -0.170 4.170 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.401 0.599 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.408 -10.311 11.741 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.235 3.765 11 O -0.437 6.437 12 C -0.091 4.091 13 N -0.199 5.199 14 C -0.079 4.079 15 C 0.004 3.996 16 N -0.377 5.377 17 C 0.306 3.694 18 O -0.387 6.387 19 C -0.025 4.025 20 H 0.115 0.885 21 C -0.040 4.040 22 O -0.291 6.291 23 C -0.056 4.056 24 C -0.054 4.054 25 O -0.268 6.268 26 C -0.091 4.091 27 C -0.263 4.263 28 C -0.208 4.208 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.759 -11.783 10.763 23.876 hybrid contribution 0.816 2.279 0.825 2.557 sum 18.575 -9.505 11.588 23.867 Atomic orbital electron populations 1.69618 1.05635 1.27510 1.49281 1.25038 0.95484 0.97959 0.97674 0.86684 0.79716 0.84112 0.78926 1.19595 1.20181 1.19572 1.19416 0.79156 0.96613 1.48117 0.86253 1.42221 1.07544 1.06095 1.67240 1.19644 0.87966 0.84627 0.84286 1.90577 1.69226 1.30755 1.53130 1.22029 0.95640 0.89234 1.02173 1.61206 1.13215 1.20532 1.24935 1.22252 1.03333 0.93451 0.88906 1.21344 1.01695 0.94094 0.82454 1.45804 1.69762 1.08794 1.13304 1.19815 0.78213 0.82266 0.89094 1.90749 1.44408 1.55946 1.47644 1.22596 1.01236 0.84331 0.94311 0.88493 1.23147 0.98509 0.98904 0.83390 1.88131 1.92726 1.20370 1.27905 1.23335 0.99380 0.81502 1.01432 1.23362 0.99238 0.99229 0.83607 1.88241 1.92729 1.17410 1.28419 1.22784 0.88383 0.98082 0.99830 1.23616 1.01506 0.95875 1.05273 1.23068 1.03107 1.02879 0.91734 0.91591 0.79787 0.88646 0.92860 0.94575 0.88235 0.89732 0.91542 0.76472 0.91339 0.86994 0.87346 0.91783 0.91664 0.87094 0.86204 0.88204 0.88963 0.88512 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.50 0.77 -24.56 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.88 16 7 C -0.30 -8.39 10.16 -14.93 -0.15 -8.54 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.59 -13.57 5.09 -10.96 -0.06 -13.63 16 10 C 0.45 9.75 7.30 -10.99 -0.08 9.67 16 11 O -0.56 -14.31 14.75 5.55 0.08 -14.22 16 12 C 0.04 0.64 4.10 -4.98 -0.02 0.62 16 13 N -0.48 -7.08 4.31 -228.09 -0.98 -8.07 16 14 C 0.05 0.65 4.71 -3.82 -0.02 0.63 16 15 C 0.13 1.64 5.66 -4.04 -0.02 1.62 16 16 N -0.72 -7.84 5.52 -60.29 -0.33 -8.17 16 17 C 0.52 6.67 7.18 -10.98 -0.08 6.59 16 18 O -0.51 -8.88 16.51 -14.25 -0.24 -9.11 16 19 C 0.04 0.38 3.26 -27.80 -0.09 0.28 16 20 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 21 C 0.04 0.31 6.29 37.24 0.23 0.54 16 22 O -0.37 -3.29 10.85 -48.80 -0.53 -3.82 16 23 C 0.02 0.14 7.05 37.23 0.26 0.40 16 24 C 0.02 0.17 7.05 37.23 0.26 0.43 16 25 O -0.35 -4.11 10.03 -62.50 -0.63 -4.73 16 26 C 0.02 0.22 5.81 -67.71 -0.39 -0.17 16 27 C -0.22 -2.27 9.53 -26.73 -0.25 -2.53 16 28 C -0.17 -1.87 9.96 -26.73 -0.27 -2.14 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.37 7.44 5.76 -40.82 -0.24 7.20 16 31 H 0.10 1.37 5.83 -51.93 -0.30 1.06 16 32 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.10 1.62 6.51 -51.93 -0.34 1.28 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.82 6.42 -51.93 -0.33 0.48 16 37 H 0.40 3.21 8.41 -40.82 -0.34 2.87 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 1.27 6.35 -51.93 -0.33 0.94 16 45 H 0.10 1.04 5.93 -51.93 -0.31 0.73 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 1.22 7.67 -51.92 -0.40 0.82 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -36.12 388.97 -8.67 -44.79 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.20 Total: 13.04 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.71 Total: 8.42 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.60 Total: -54.43 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.31 Total: -31.89 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.12 -8.67 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.883 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds