Wall clock time and date at job start Wed Apr 1 2020 00:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47550 * 270.00426 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00367 * 3 2 1 6 6 H 1.48506 * 109.47077 * 150.00186 * 3 2 1 7 7 C 1.38950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00556 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99559 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00233 * 180.27486 * 10 9 7 13 13 N 1.46898 * 109.46987 * 174.08729 * 12 10 9 14 14 C 1.46900 * 110.99930 * 288.32687 * 13 12 10 15 15 C 1.52998 * 109.47148 * 170.00339 * 14 13 12 16 16 N 1.46500 * 109.46948 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99577 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00210 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99796 * 180.02562 * 17 16 15 20 20 H 1.08995 * 109.52867 * 54.86291 * 19 17 16 21 21 C 1.53153 * 109.52309 * 294.67103 * 19 17 16 22 22 O 1.43066 * 109.15096 * 184.78652 * 21 19 17 23 23 C 1.43081 * 113.59448 * 57.95242 * 22 21 19 24 24 C 1.53140 * 109.14806 * 302.04800 * 23 22 21 25 25 O 1.43070 * 109.15379 * 55.31478 * 24 23 22 26 26 C 1.46902 * 111.00044 * 164.37625 * 13 12 10 27 27 C 1.53004 * 117.49761 * 6.94560 * 26 13 12 28 28 C 1.52996 * 59.99880 * 252.50921 * 27 26 13 29 29 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 30 30 H 0.97010 * 119.99627 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47251 * 294.08767 * 12 10 9 32 32 H 1.08998 * 109.46901 * 54.08459 * 12 10 9 33 33 H 1.08998 * 109.47249 * 290.00331 * 14 13 12 34 34 H 1.09003 * 109.46849 * 50.00234 * 14 13 12 35 35 H 1.09006 * 109.46990 * 299.99754 * 15 14 13 36 36 H 1.08995 * 109.47576 * 60.00018 * 15 14 13 37 37 H 0.96994 * 120.00505 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.51831 * 304.69131 * 21 19 17 39 39 H 1.08998 * 109.52356 * 64.88173 * 21 19 17 40 40 H 1.09003 * 109.52633 * 182.14511 * 23 22 21 41 41 H 1.08997 * 109.52295 * 61.95135 * 23 22 21 42 42 H 1.09001 * 109.52613 * 295.40255 * 24 23 22 43 43 H 1.09006 * 109.52306 * 175.21223 * 24 23 22 44 44 H 1.08998 * 115.55299 * 152.64728 * 26 13 12 45 45 H 1.09001 * 117.49852 * 359.97438 * 27 26 13 46 46 H 1.09000 * 117.50155 * 145.02203 * 27 26 13 47 47 H 1.08999 * 117.49914 * 252.50799 * 28 27 26 48 48 H 1.09008 * 117.51679 * 107.48027 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5607 -2.3707 0.0046 13 7 6.0497 -3.7487 0.1461 14 6 5.8135 -4.2541 1.5050 15 6 6.1019 -5.7561 1.5478 16 7 5.8657 -6.2603 2.9029 17 6 6.0565 -7.5657 3.1789 18 8 6.4232 -8.3229 2.3055 19 6 5.8130 -8.0845 4.5727 20 1 4.8018 -7.8253 4.8864 21 6 6.8255 -7.4582 5.5361 22 8 6.6603 -8.0388 6.8332 23 6 6.8159 -9.4610 6.8481 24 6 5.8035 -10.0872 5.8847 25 8 5.9687 -9.5067 4.5876 26 6 7.4718 -3.8418 -0.2103 27 6 8.2169 -2.5351 -0.4903 28 6 7.8663 -3.4780 -1.6431 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3634 -0.0007 31 1 5.9276 -1.9493 -0.9313 32 1 5.9208 -1.7697 0.8396 33 1 6.4712 -3.7378 2.2042 34 1 4.7749 -4.0755 1.7837 35 1 5.4441 -6.2724 0.8486 36 1 7.1404 -5.9348 1.2692 37 1 5.5720 -5.6548 3.6014 38 1 7.8366 -7.6500 5.1771 39 1 6.6563 -6.3830 5.5940 40 1 6.6398 -9.8363 7.8562 41 1 7.8268 -9.7202 6.5333 42 1 4.7923 -9.8955 6.2437 43 1 5.9727 -11.1625 5.8268 44 1 8.0269 -4.6437 0.2763 45 1 7.6519 -1.6065 -0.4105 46 1 9.2625 -2.4772 -0.1878 47 1 8.6811 -4.0403 -2.0990 48 1 7.0705 -3.1699 -2.3214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:45 Heat of formation + Delta-G solvation = -135.006570 kcal Electronic energy + Delta-G solvation = -29951.034978 eV Core-core repulsion = 25620.959389 eV Total energy + Delta-G solvation = -4330.075588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62009 -40.84480 -40.02498 -39.14685 -37.17456 -36.43314 -35.97918 -34.50326 -33.74098 -32.94472 -30.81793 -29.25065 -27.88403 -26.20056 -25.75521 -23.98642 -23.20049 -22.87343 -21.68641 -21.65827 -20.92842 -19.92413 -18.84660 -18.19982 -18.17799 -17.65826 -17.18864 -17.09012 -16.85825 -16.61951 -16.48746 -16.28923 -16.02287 -15.70538 -15.36649 -15.30913 -14.87802 -14.55251 -14.52468 -14.34663 -14.12356 -14.06100 -13.57813 -13.40972 -13.27125 -13.02259 -12.67605 -12.53721 -12.39314 -12.35882 -12.23908 -11.97335 -11.96413 -11.69514 -11.67247 -11.47937 -11.20757 -10.96361 -10.35998 -10.34360 -10.23213 -10.20252 -9.05291 -8.39837 -6.00580 1.30389 1.34642 1.36595 1.45124 1.58672 1.96879 2.23983 2.47862 2.61408 2.85471 2.96213 3.16092 3.28169 3.39507 3.58549 3.70148 3.80540 3.93227 3.96993 4.03673 4.09352 4.11208 4.15440 4.20462 4.23038 4.34765 4.40834 4.45283 4.49605 4.51282 4.76078 4.78082 4.82512 4.85413 4.91677 4.98368 5.12600 5.23003 5.31257 5.53835 5.80840 5.85497 5.86860 5.99858 6.15433 6.37048 6.61112 6.90259 7.03910 7.41460 7.98928 8.77812 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002387 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.208331 B =11727.159625 C =13173.454207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.324 4.324 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.604 6.604 12 C 0.055 3.945 13 N -0.507 5.507 14 C 0.058 3.942 15 C 0.138 3.862 16 N -0.708 5.708 17 C 0.521 3.479 18 O -0.566 6.566 19 C 0.040 3.960 20 H 0.111 0.889 21 C 0.044 3.956 22 O -0.384 6.384 23 C 0.018 3.982 24 C 0.017 3.983 25 O -0.385 6.385 26 C 0.006 3.994 27 C -0.202 4.202 28 C -0.178 4.178 29 H 0.278 0.722 30 H 0.389 0.611 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.417 0.583 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.060 -8.075 13.278 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.151 1.151 7 C -0.454 4.454 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.488 6.488 12 C -0.075 4.075 13 N -0.229 5.229 14 C -0.070 4.070 15 C 0.014 3.986 16 N -0.362 5.362 17 C 0.307 3.693 18 O -0.444 6.444 19 C -0.021 4.021 20 H 0.128 0.872 21 C -0.034 4.034 22 O -0.302 6.302 23 C -0.058 4.058 24 C -0.059 4.059 25 O -0.304 6.304 26 C -0.102 4.102 27 C -0.240 4.240 28 C -0.216 4.216 29 H 0.088 0.912 30 H 0.224 0.776 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.130 0.870 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.437 -9.533 12.335 26.507 hybrid contribution -0.385 1.390 0.327 1.478 sum 21.052 -8.144 12.662 25.882 Atomic orbital electron populations 1.69807 1.08177 1.29185 1.50477 1.26110 0.96442 1.02714 0.96199 0.85385 0.79605 0.76790 0.79866 1.18390 1.20145 1.15134 1.18966 0.81450 0.94812 1.50134 0.92735 1.42035 1.05771 1.07549 1.68062 1.20889 0.90717 0.83341 0.81272 1.90563 1.71193 1.32628 1.54383 1.21911 0.90267 0.90755 1.04608 1.61071 1.15804 1.20118 1.25942 1.22109 1.01958 0.93680 0.89293 1.21108 1.01239 0.93619 0.82645 1.45674 1.68840 1.08711 1.13017 1.20375 0.76981 0.82148 0.89823 1.90719 1.46996 1.57267 1.49403 1.22636 1.02648 0.84144 0.92715 0.87170 1.23184 0.97510 1.00006 0.82685 1.88117 1.92712 1.21492 1.27927 1.23502 0.99144 0.80538 1.02604 1.23620 0.99994 1.00093 0.82214 1.88191 1.93042 1.18208 1.30999 1.22841 0.86706 1.00053 1.00644 1.23674 1.02432 0.94738 1.03194 1.23134 1.03211 1.03815 0.91456 0.91217 0.77570 0.86565 0.89430 0.91096 0.91686 0.93718 0.90440 0.74565 0.91695 0.84568 0.84765 0.91699 0.90994 0.85460 0.85003 0.87920 0.86721 0.86966 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 13.96 21.66 0.30 -55.63 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.96 37.82 27.74 68.60 1.90 39.72 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 7 C -0.32 -18.64 10.16 84.04 0.85 -17.78 16 8 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.59 -27.00 5.09 -306.98 -1.56 -28.56 16 10 C 0.45 19.59 7.30 87.66 0.64 20.23 16 11 O -0.60 -32.66 14.75 -3.07 -0.05 -32.71 16 12 C 0.06 1.61 4.10 85.56 0.35 1.96 16 13 N -0.51 -14.32 4.31 -875.53 -3.78 -18.10 16 14 C 0.06 1.48 4.71 86.30 0.41 1.89 16 15 C 0.14 3.57 5.66 86.38 0.49 4.06 16 16 N -0.71 -15.14 5.52 -463.06 -2.56 -17.70 16 17 C 0.52 13.45 7.18 87.66 0.63 14.08 16 18 O -0.57 -20.34 16.51 15.92 0.26 -20.08 16 19 C 0.04 0.79 3.26 29.90 0.10 0.89 16 20 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 21 C 0.04 0.64 6.29 72.03 0.45 1.09 16 22 O -0.38 -6.01 10.85 -136.00 -1.48 -7.49 16 23 C 0.02 0.21 7.05 72.03 0.51 0.72 16 24 C 0.02 0.23 7.05 72.03 0.51 0.74 16 25 O -0.39 -9.03 10.03 -122.90 -1.23 -10.26 16 26 C 0.01 0.13 5.81 44.92 0.26 0.39 16 27 C -0.20 -3.21 9.53 30.59 0.29 -2.92 16 28 C -0.18 -3.45 9.96 30.59 0.30 -3.15 16 29 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.39 14.54 5.76 -92.70 -0.53 14.00 16 31 H 0.12 2.94 5.83 -2.38 -0.01 2.93 16 32 H 0.09 2.00 7.87 -2.39 -0.02 1.98 16 33 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 34 H 0.06 2.14 6.51 -2.39 -0.02 2.13 16 35 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.85 6.42 -2.39 -0.02 1.83 16 37 H 0.42 6.16 8.41 -92.71 -0.78 5.38 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.14 1.23 8.08 -2.39 -0.02 1.22 16 40 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.13 2.41 6.35 -2.39 -0.02 2.39 16 45 H 0.10 1.61 5.93 -2.39 -0.01 1.59 16 46 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 1.89 7.67 -2.38 -0.02 1.88 16 Total: -1.00 -86.69 388.97 -2.29 -88.98 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.37 Total: 40.05 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.26 Total: 21.78 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -7.59 Total: -119.99 kcal Atomic # 8 Polarization: -68.05 SS G_CDS: -2.49 Total: -70.54 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.72 kcal Total: -86.69 -2.29 -88.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.028 kcal (2) G-P(sol) polarization free energy of solvation -86.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds