Wall clock time and date at job start Wed Apr 1 2020 00:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99959 * 2 1 4 4 N 1.34778 * 120.00294 * 179.97438 * 2 1 3 5 5 C 1.47160 * 120.97993 * 354.74430 * 4 2 1 6 6 C 1.53297 * 108.38102 * 230.50772 * 5 4 2 7 7 O 1.42956 * 109.22246 * 307.69988 * 6 5 4 8 8 C 1.43043 * 114.19230 * 62.58880 * 7 6 5 9 9 C 1.47154 * 120.98491 * 174.71632 * 4 2 1 10 10 H 1.08998 * 109.68055 * 249.21813 * 9 4 2 11 11 C 1.50701 * 109.67838 * 9.72770 * 9 4 2 12 12 O 1.21290 * 119.99823 * 62.87789 * 11 9 4 13 13 N 1.34769 * 120.00234 * 242.87155 * 11 9 4 14 14 C 1.46505 * 120.00090 * 5.40171 * 13 11 9 15 15 C 1.46501 * 120.00229 * 185.39755 * 13 11 9 16 16 H 1.09001 * 110.63995 * 0.69925 * 15 13 11 17 17 C 1.54322 * 110.72401 * 123.84497 * 15 13 11 18 18 N 1.47310 * 107.12220 * 140.42790 * 17 15 13 19 19 C 1.36939 * 125.61754 * 181.11224 * 18 17 15 20 20 H 1.08001 * 119.99631 * 0.19416 * 19 18 17 21 21 C 1.38817 * 120.00397 * 180.20504 * 19 18 17 22 22 N 1.31618 * 119.99588 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46833 * 89.99732 * 23 21 19 25 25 H 1.48497 * 109.46824 * 209.99657 * 23 21 19 26 26 H 1.48498 * 109.47275 * 329.99548 * 23 21 19 27 27 C 1.47425 * 108.73635 * 1.30246 * 18 17 15 28 28 C 1.54907 * 104.83196 * 335.71611 * 27 18 17 29 29 H 1.09004 * 111.00275 * 278.93172 * 28 27 18 30 30 O 1.42899 * 111.00284 * 155.08595 * 28 27 18 31 31 H 1.09007 * 109.46930 * 182.63001 * 1 2 3 32 32 H 1.08994 * 109.47282 * 302.63089 * 1 2 3 33 33 H 1.08997 * 109.47102 * 62.63966 * 1 2 3 34 34 H 1.09001 * 109.68082 * 350.23450 * 5 4 2 35 35 H 1.08999 * 109.67881 * 110.75227 * 5 4 2 36 36 H 1.09003 * 109.51060 * 67.62548 * 6 5 4 37 37 H 1.09000 * 109.50552 * 187.72388 * 6 5 4 38 38 H 1.08988 * 109.57061 * 177.50762 * 8 7 6 39 39 H 1.09000 * 109.50673 * 57.32010 * 8 7 6 40 40 H 1.09001 * 109.47094 * 84.22618 * 14 13 11 41 41 H 1.08993 * 109.46973 * 204.22798 * 14 13 11 42 42 H 1.08998 * 109.46716 * 324.23060 * 14 13 11 43 43 H 1.09003 * 109.88065 * 259.97870 * 17 15 13 44 44 H 1.09008 * 109.87856 * 21.13907 * 17 15 13 45 45 H 0.97004 * 119.99903 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.36658 * 216.87173 * 27 18 17 47 47 H 1.09000 * 110.36601 * 94.55880 * 27 18 17 48 48 H 0.96702 * 114.00750 * 67.80422 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4717 -2.4514 0.1167 6 6 2.1351 -3.2711 1.2293 7 8 3.5420 -3.3425 0.9863 8 6 4.2058 -2.0755 1.0083 9 6 3.6476 -1.1951 -0.1156 10 1 3.9314 -1.6104 -1.0826 11 6 4.1939 0.2032 0.0161 12 8 4.0399 0.8195 1.0493 13 7 4.8535 0.7689 -1.0140 14 6 4.9375 0.0732 -2.3006 15 6 5.4865 2.0795 -0.8474 16 1 5.3411 2.4502 0.1673 17 6 6.9890 2.0081 -1.1925 18 7 7.3260 3.2439 -1.9200 19 6 8.5591 3.5617 -2.4237 20 1 9.3847 2.8758 -2.3033 21 6 8.7481 4.7653 -3.0889 22 7 7.7419 5.6010 -3.2359 23 14 10.4304 5.1990 -3.7753 24 1 10.5409 4.6971 -5.1686 25 1 10.6039 6.6738 -3.7652 26 1 11.4837 4.5710 -2.9379 27 6 6.1179 4.0837 -2.0122 28 6 4.9348 3.0916 -1.8859 29 1 4.7318 2.6025 -2.8386 30 8 3.7664 3.7484 -1.3904 31 1 -0.3633 -1.0267 0.0472 32 1 -0.3633 0.5541 0.8654 33 1 -0.3633 0.4723 -0.9127 34 1 0.4260 -2.2719 0.3665 35 1 1.5360 -2.9928 -0.8271 36 1 1.9557 -2.7912 2.1914 37 1 1.7152 -4.2769 1.2401 38 1 5.2756 -2.2212 0.8595 39 1 4.0338 -1.5912 1.9696 40 1 4.0396 0.2779 -2.8837 41 1 5.8131 0.4238 -2.8467 42 1 5.0221 -0.9998 -2.1286 43 1 7.5768 1.9409 -0.2770 44 1 7.1833 1.1416 -1.8248 45 1 7.8740 6.4422 -3.7004 46 1 6.0835 4.5947 -2.9744 47 1 6.0954 4.8067 -1.1968 48 1 3.3856 4.3906 -2.0050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047633848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:08 Heat of formation + Delta-G solvation = -85.405818 kcal Electronic energy + Delta-G solvation = -32473.265594 eV Core-core repulsion = 28145.340856 eV Total energy + Delta-G solvation = -4327.924738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14905 -39.15777 -38.42390 -37.45031 -35.06452 -34.97134 -34.59751 -32.47727 -31.64273 -30.05320 -28.66304 -27.79011 -27.20428 -26.51994 -25.07875 -24.07129 -22.56187 -21.11535 -20.36191 -19.35529 -18.56615 -17.73998 -17.22531 -16.99230 -16.84700 -16.40299 -16.08727 -15.70592 -15.50706 -15.21969 -14.87948 -14.58378 -14.48831 -13.92760 -13.80267 -13.72048 -13.50735 -13.07225 -12.88348 -12.72977 -12.48942 -12.34769 -12.19861 -12.13241 -12.04507 -11.67389 -11.49859 -11.36976 -11.28460 -11.15471 -10.89505 -10.80120 -10.55983 -10.15292 -9.88065 -9.65671 -9.56877 -9.36355 -9.06196 -8.82839 -8.68771 -8.12768 -6.89069 -5.68458 -3.12126 2.32475 2.55380 3.10106 3.25413 3.38283 3.43412 3.45747 3.50681 4.27262 4.32068 4.44805 4.47811 4.64276 4.65696 4.71740 4.79466 4.87605 4.99151 5.09475 5.20597 5.22692 5.29653 5.36943 5.41711 5.45533 5.51750 5.59779 5.60777 5.74629 5.78084 5.92046 6.00998 6.05204 6.19784 6.30260 6.57261 6.65865 6.70888 7.05824 7.10562 7.42866 7.55402 7.73200 7.79861 8.07013 8.25373 8.41476 8.61074 9.16244 9.76746 10.40288 11.34752 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003059 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.945816 B = 9152.580931 C = 9964.722817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.495 3.505 3 O -0.479 6.479 4 N -0.613 5.613 5 C 0.072 3.928 6 C 0.044 3.956 7 O -0.374 6.374 8 C 0.062 3.938 9 C 0.087 3.913 10 H 0.100 0.900 11 C 0.539 3.461 12 O -0.517 6.517 13 N -0.597 5.597 14 C 0.073 3.927 15 C 0.145 3.855 16 H 0.109 0.891 17 C 0.128 3.872 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.917 3.083 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 C 0.070 3.930 29 H 0.054 0.946 30 O -0.553 6.553 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.110 0.890 47 H 0.023 0.977 48 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 -19.506 3.811 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.283 3.717 3 O -0.350 6.350 4 N -0.353 5.353 5 C -0.050 4.050 6 C -0.034 4.034 7 O -0.292 6.292 8 C -0.016 4.016 9 C -0.020 4.020 10 H 0.118 0.882 11 C 0.325 3.675 12 O -0.392 6.392 13 N -0.330 5.330 14 C -0.070 4.070 15 C 0.042 3.958 16 H 0.127 0.873 17 C 0.002 3.998 18 N -0.327 5.327 19 C -0.352 4.352 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.003 3.997 28 C 0.009 3.991 29 H 0.072 0.928 30 O -0.356 6.356 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.128 0.872 47 H 0.041 0.959 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.552 -18.936 4.761 24.962 hybrid contribution 0.514 0.707 -0.984 1.316 sum -15.038 -18.229 3.777 23.931 Atomic orbital electron populations 1.21968 0.91514 1.04010 1.05509 1.21020 0.90815 0.83297 0.76614 1.91007 1.68123 1.29998 1.45863 1.48126 1.04952 1.06577 1.75632 1.22576 0.97584 0.84377 1.00496 1.23026 0.81972 1.01239 0.97161 1.87996 1.20110 1.28524 1.92552 1.22865 0.97508 0.83662 0.97538 1.22056 0.81865 0.96333 1.01777 0.88241 1.19408 0.77607 0.86243 0.84200 1.90683 1.56191 1.62558 1.29782 1.47527 1.54391 1.19826 1.11299 1.21825 1.02893 0.96360 0.85965 1.22023 0.91701 0.80657 1.01459 0.87308 1.21640 0.91365 0.91275 0.95557 1.44355 1.07493 1.16528 1.64331 1.19091 0.85896 1.01786 1.28415 0.90236 1.24814 0.98046 0.96604 1.01129 1.69777 1.29137 1.10757 1.47346 0.86033 0.82947 0.77448 0.78818 1.21562 1.21617 1.20666 1.22565 0.82266 0.91193 1.03698 1.23621 0.86579 0.94294 0.94645 0.92842 1.86561 1.43598 1.58958 1.46505 0.90366 0.88748 0.88640 0.87931 0.90259 0.92301 0.87369 0.87106 0.91077 0.93160 0.89595 0.91651 0.95122 0.94941 0.93634 0.87247 0.95863 0.78612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.10 36.01 0.36 -1.03 16 2 C 0.49 6.65 7.66 -10.99 -0.08 6.57 16 3 O -0.48 -9.25 12.76 -19.16 -0.24 -9.50 16 4 N -0.61 -6.85 3.02 -166.05 -0.50 -7.35 16 5 C 0.07 0.47 6.47 -3.53 -0.02 0.44 16 6 C 0.04 0.29 6.99 37.31 0.26 0.55 16 7 O -0.37 -3.68 10.74 -35.23 -0.38 -4.05 16 8 C 0.06 0.70 6.25 37.31 0.23 0.93 16 9 C 0.09 1.09 3.17 -68.57 -0.22 0.87 16 10 H 0.10 1.08 5.41 -51.93 -0.28 0.80 16 11 C 0.54 9.40 4.28 -10.99 -0.05 9.35 16 12 O -0.52 -11.19 13.95 -19.17 -0.27 -11.46 16 13 N -0.60 -10.45 2.88 -171.84 -0.50 -10.95 16 14 C 0.07 0.99 8.71 59.85 0.52 1.51 16 15 C 0.15 3.05 3.08 -66.10 -0.20 2.84 16 16 H 0.11 2.62 7.01 -51.93 -0.36 2.26 16 17 C 0.13 2.82 6.78 -2.91 -0.02 2.80 16 18 N -0.60 -15.62 3.40 -169.83 -0.58 -16.19 16 19 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 23 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 3.25 5.62 -2.53 -0.01 3.23 16 28 C 0.07 1.49 3.99 -24.58 -0.10 1.40 16 29 H 0.05 1.10 7.24 -51.93 -0.38 0.73 16 30 O -0.55 -11.73 13.47 -35.23 -0.47 -12.20 16 31 H 0.08 0.37 5.22 -51.93 -0.27 0.10 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.39 5.29 -51.93 -0.27 0.12 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.11 1.10 8.14 -51.94 -0.42 0.68 16 39 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.24 6.36 -51.93 -0.33 0.91 16 42 H 0.07 0.68 5.98 -51.93 -0.31 0.37 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.66 6.20 -51.92 -0.32 0.34 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.11 3.00 5.87 -51.93 -0.31 2.70 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.37 6.21 9.12 45.56 0.42 6.62 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -38.40 371.03 -7.57 -45.96 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.18 Total: 6.76 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 0.42 Total: 22.70 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -1.01 Total: -60.77 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.36 Total: -37.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.40 -7.57 -45.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047633848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.443 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds