Wall clock time and date at job start Wed Apr 1 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99633 * 2 1 4 4 C 1.52993 * 109.47541 * 269.99820 * 3 2 1 5 5 H 1.09005 * 112.78246 * 284.19549 * 4 3 2 6 6 C 1.53510 * 113.47902 * 153.38214 * 4 3 2 7 7 C 1.53512 * 83.57387 * 219.21036 * 6 4 3 8 8 N 1.47474 * 87.93391 * 26.02310 * 7 6 4 9 9 C 1.46904 * 111.00129 * 221.29363 * 8 7 6 10 10 C 1.50696 * 109.47414 * 293.90960 * 9 8 7 11 11 O 1.21292 * 119.99885 * 354.27614 * 10 9 8 12 12 N 1.34773 * 119.99999 * 174.54876 * 10 9 8 13 13 C 1.37103 * 119.99851 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00063 * 180.02562 * 13 12 10 16 16 N 1.31405 * 120.00102 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99773 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47222 * 90.00507 * 17 15 13 19 19 H 1.48505 * 109.46997 * 210.00199 * 17 15 13 20 20 H 1.48499 * 109.47237 * 330.00104 * 17 15 13 21 21 C 1.34772 * 120.00173 * 180.02562 * 2 1 3 22 22 O 1.21285 * 120.00238 * 180.02562 * 21 2 1 23 23 C 1.50699 * 120.00174 * 0.02562 * 21 2 1 24 24 H 1.09007 * 109.52592 * 305.13340 * 23 21 2 25 25 C 1.53144 * 109.52261 * 65.32849 * 23 21 2 26 26 O 1.43079 * 109.15051 * 175.21893 * 25 23 21 27 27 C 1.43074 * 113.58776 * 302.04383 * 26 25 23 28 28 C 1.53144 * 109.15100 * 57.95645 * 27 26 25 29 29 O 1.43072 * 109.15262 * 304.68307 * 28 27 26 30 30 H 1.09003 * 109.46586 * 90.00094 * 1 2 3 31 31 H 1.09004 * 109.47016 * 209.99587 * 1 2 3 32 32 H 1.08997 * 109.47516 * 330.00344 * 1 2 3 33 33 H 1.09007 * 109.46761 * 149.99881 * 3 2 1 34 34 H 1.08994 * 109.47255 * 30.00186 * 3 2 1 35 35 H 1.09001 * 114.16833 * 105.56657 * 6 4 3 36 36 H 1.08993 * 114.34099 * 332.86819 * 6 4 3 37 37 H 1.09003 * 113.47788 * 271.25849 * 7 6 4 38 38 H 1.08996 * 113.47906 * 140.79253 * 7 6 4 39 39 H 1.08999 * 109.46984 * 173.90427 * 9 8 7 40 40 H 1.09001 * 109.46755 * 53.91132 * 9 8 7 41 41 H 0.96996 * 120.00550 * 0.02562 * 12 10 9 42 42 H 0.97006 * 120.00147 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.52502 * 295.11489 * 25 23 21 44 44 H 1.08991 * 109.52617 * 55.31325 * 25 23 21 45 45 H 1.09002 * 109.52818 * 298.05467 * 27 26 25 46 46 H 1.09001 * 109.52444 * 177.85659 * 27 26 25 47 47 H 1.09004 * 109.52502 * 184.78527 * 28 27 26 48 48 H 1.09000 * 109.52604 * 64.58987 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2505 1.1441 -1.9225 6 6 2.6014 3.2303 -1.5993 7 6 1.7995 3.0022 -2.8883 8 7 1.2251 1.8006 -2.2550 9 6 1.1443 0.6888 -3.2118 10 6 0.1542 1.0296 -4.2956 11 8 -0.5029 2.0462 -4.2188 12 7 -0.0050 0.2021 -5.3473 13 6 -0.9061 0.5119 -6.3331 14 1 -1.4881 1.4193 -6.2670 15 6 -1.0707 -0.3415 -7.4172 16 7 -1.9341 -0.0443 -8.3622 17 14 -0.0637 -1.9106 -7.5319 18 1 -0.7954 -3.0182 -6.8663 19 1 0.1593 -2.2525 -8.9597 20 1 1.2456 -1.7087 -6.8610 21 6 2.1389 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0001 23 6 1.3855 -2.4723 -0.0017 24 1 0.6910 -2.4928 0.8382 25 6 0.6083 -2.6134 -1.3137 26 8 -0.0133 -3.9014 -1.3548 27 6 0.9110 -4.9872 -1.2377 28 6 1.6882 -4.8461 0.0744 29 8 2.3098 -3.5581 0.1155 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.1499 1.1384 0.5139 34 1 1.6084 2.0284 0.5138 35 1 3.6260 3.5636 -1.7643 36 1 2.0753 3.8136 -0.8438 37 1 2.4232 2.7805 -3.7543 38 1 1.0643 3.7823 -3.0862 39 1 0.8196 -0.2135 -2.6937 40 1 2.1253 0.5197 -3.6559 41 1 0.5173 -0.6131 -5.4066 42 1 -2.0487 -0.6399 -9.1192 43 1 -0.1559 -1.8382 -1.3696 44 1 1.2933 -2.5124 -2.1555 45 1 1.6063 -4.9661 -2.0769 46 1 0.3661 -5.9313 -1.2385 47 1 2.4525 -5.6213 0.1303 48 1 1.0032 -4.9472 0.9162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230823708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:03 Heat of formation + Delta-G solvation = -93.486502 kcal Electronic energy + Delta-G solvation = -32153.994665 eV Core-core repulsion = 27825.719522 eV Total energy + Delta-G solvation = -4328.275143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04679 -40.23343 -38.99789 -37.90394 -36.36189 -35.53604 -34.00491 -32.36820 -31.74690 -30.85628 -29.34198 -28.00842 -26.82289 -25.93621 -25.10294 -23.57243 -23.37012 -21.93713 -19.99415 -19.42749 -19.38310 -18.38224 -17.69312 -17.21114 -16.97970 -16.49276 -16.16109 -15.99423 -15.76653 -15.56612 -15.44014 -14.86141 -14.64207 -14.45409 -14.01749 -13.72036 -13.65394 -13.45191 -13.21476 -13.12190 -12.82234 -12.65801 -12.43963 -12.26338 -12.19225 -11.95131 -11.71368 -11.57118 -11.45474 -11.21685 -11.14850 -10.88105 -10.85988 -10.62821 -10.52023 -10.00697 -9.87347 -9.59651 -9.49266 -9.03403 -8.59400 -8.42909 -8.21259 -6.34462 -3.85864 2.32521 2.45573 3.00314 3.04895 3.13086 3.38701 3.50501 3.68004 3.99295 4.07729 4.14625 4.24899 4.43741 4.51484 4.64288 4.69452 4.74694 4.80898 4.85283 4.98557 5.05890 5.11475 5.16276 5.25261 5.28941 5.36500 5.38396 5.39552 5.43114 5.47888 5.55486 5.66637 5.67868 5.74647 5.82655 5.87922 6.07655 6.22994 6.26434 6.50256 6.58672 6.62828 7.07954 7.18655 7.54033 7.94278 8.09968 8.55662 8.91251 9.38546 9.77993 10.78505 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.004796 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.541710 B = 5836.296140 C = 8375.677849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.139 3.861 4 C 0.002 3.998 5 H 0.079 0.921 6 C -0.139 4.139 7 C 0.014 3.986 8 N -0.434 5.434 9 C 0.008 3.992 10 C 0.450 3.550 11 O -0.559 6.559 12 N -0.590 5.590 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.044 3.956 16 N -0.879 5.879 17 Si 0.876 3.124 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.271 1.271 21 C 0.521 3.479 22 O -0.518 6.518 23 C 0.039 3.961 24 H 0.094 0.906 25 C 0.028 3.972 26 O -0.368 6.368 27 C 0.018 3.982 28 C 0.024 3.976 29 O -0.352 6.352 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.369 0.631 42 H 0.274 0.726 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -5.885 19.163 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.336 5.336 3 C 0.016 3.984 4 C -0.108 4.108 5 H 0.097 0.903 6 C -0.177 4.177 7 C -0.114 4.114 8 N -0.156 5.156 9 C -0.124 4.124 10 C 0.236 3.764 11 O -0.441 6.441 12 N -0.229 5.229 13 C -0.433 4.433 14 H 0.138 0.862 15 C -0.159 4.159 16 N -0.519 5.519 17 Si 0.702 3.298 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.196 1.196 21 C 0.307 3.693 22 O -0.393 6.393 23 C -0.022 4.022 24 H 0.112 0.888 25 C -0.049 4.049 26 O -0.286 6.286 27 C -0.059 4.059 28 C -0.053 4.053 29 O -0.270 6.270 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.202 0.798 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.793 -5.269 19.298 21.469 hybrid contribution 1.382 -1.694 -0.903 2.366 sum 9.175 -6.963 18.395 21.703 Atomic orbital electron populations 1.22088 0.78582 1.03022 1.03342 1.47645 1.07502 1.05330 1.73098 1.21516 0.97529 0.83871 0.95474 1.23969 0.93680 0.97063 0.96134 0.90303 1.23212 1.00727 0.94608 0.99170 1.23546 0.97295 0.95292 0.95297 1.68798 1.29965 1.02638 1.14230 1.22536 0.98730 0.96494 0.94628 1.19557 0.87063 0.86098 0.83699 1.90567 1.48769 1.26642 1.78076 1.42237 1.38105 1.21541 1.21027 1.19411 1.16183 1.09507 0.98209 0.86229 1.25014 0.97066 0.98139 0.95710 1.69614 1.34210 1.37654 1.10459 0.86733 0.80282 0.84040 0.78749 1.19428 1.20079 1.19636 1.19901 0.87862 0.84444 0.77107 1.90719 1.13427 1.86907 1.48248 1.22574 0.92010 0.87646 0.99994 0.88846 1.23389 0.98764 0.87116 0.95621 1.88174 1.32696 1.13575 1.94143 1.23342 0.93730 0.91315 0.97530 1.23353 0.98576 0.85743 0.97596 1.88213 1.31494 1.12990 1.94281 0.90869 0.91564 0.90023 0.89575 0.89467 0.90744 0.88786 0.91817 0.88759 0.89792 0.93047 0.79841 0.91572 0.86303 0.91379 0.91708 0.87324 0.87188 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 8.48 59.85 0.51 1.18 16 2 N -0.60 -6.63 2.78 -181.57 -0.50 -7.14 16 3 C 0.14 1.46 5.60 -4.04 -0.02 1.44 16 4 C 0.00 0.03 3.37 -71.45 -0.24 -0.21 16 5 H 0.08 1.04 7.64 -51.93 -0.40 0.65 16 6 C -0.14 -1.47 8.00 -26.20 -0.21 -1.68 16 7 C 0.01 0.21 6.36 -7.56 -0.05 0.16 16 8 N -0.43 -6.45 5.20 -237.98 -1.24 -7.68 16 9 C 0.01 0.14 5.17 -4.98 -0.03 0.11 16 10 C 0.45 10.01 7.47 -10.99 -0.08 9.93 16 11 O -0.56 -14.46 14.99 5.55 0.08 -14.38 16 12 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 13 C -0.30 -8.52 10.16 -14.93 -0.15 -8.68 16 14 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 17 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 21 C 0.52 6.83 7.10 -10.99 -0.08 6.75 16 22 O -0.52 -8.64 16.09 -14.26 -0.23 -8.87 16 23 C 0.04 0.45 2.44 -27.81 -0.07 0.38 16 24 H 0.09 0.88 7.13 -51.93 -0.37 0.51 16 25 C 0.03 0.33 5.54 37.23 0.21 0.54 16 26 O -0.37 -4.46 10.85 -48.80 -0.53 -4.99 16 27 C 0.02 0.17 7.05 37.23 0.26 0.43 16 28 C 0.02 0.21 7.05 37.23 0.26 0.48 16 29 O -0.35 -4.47 10.03 -62.50 -0.63 -5.09 16 30 H 0.07 0.83 5.45 -51.93 -0.28 0.55 16 31 H 0.07 0.49 6.05 -51.93 -0.31 0.18 16 32 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 33 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 34 H 0.09 0.77 7.63 -51.93 -0.40 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 37 H 0.06 0.96 7.83 -51.93 -0.41 0.56 16 38 H 0.09 1.55 7.97 -51.93 -0.41 1.13 16 39 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 40 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 41 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.12 1.31 5.01 -51.93 -0.26 1.05 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -35.38 378.74 -8.20 -43.59 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.09 Total: 10.93 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 0.22 Total: 11.94 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -1.02 Total: -53.62 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.30 Total: -33.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.38 -8.20 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230823708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.897 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds