Wall clock time and date at job start Wed Apr 1 2020 00:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99633 * 2 1 4 4 C 1.52993 * 109.47541 * 269.99820 * 3 2 1 5 5 H 1.09005 * 112.78246 * 284.19549 * 4 3 2 6 6 C 1.53510 * 113.47902 * 153.38214 * 4 3 2 7 7 C 1.53512 * 83.57387 * 219.21036 * 6 4 3 8 8 N 1.47474 * 87.93391 * 26.02310 * 7 6 4 9 9 C 1.46904 * 111.00129 * 221.29363 * 8 7 6 10 10 C 1.50696 * 109.47414 * 293.90960 * 9 8 7 11 11 O 1.21292 * 119.99885 * 354.27614 * 10 9 8 12 12 N 1.34773 * 119.99999 * 174.54876 * 10 9 8 13 13 C 1.37103 * 119.99851 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00063 * 180.02562 * 13 12 10 16 16 N 1.31405 * 120.00102 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99773 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47222 * 90.00507 * 17 15 13 19 19 H 1.48505 * 109.46997 * 210.00199 * 17 15 13 20 20 H 1.48499 * 109.47237 * 330.00104 * 17 15 13 21 21 C 1.34772 * 120.00173 * 180.02562 * 2 1 3 22 22 O 1.21285 * 120.00238 * 180.02562 * 21 2 1 23 23 C 1.50699 * 120.00174 * 0.02562 * 21 2 1 24 24 H 1.09007 * 109.52592 * 305.13340 * 23 21 2 25 25 C 1.53144 * 109.52261 * 65.32849 * 23 21 2 26 26 O 1.43079 * 109.15051 * 175.21893 * 25 23 21 27 27 C 1.43074 * 113.58776 * 302.04383 * 26 25 23 28 28 C 1.53144 * 109.15100 * 57.95645 * 27 26 25 29 29 O 1.43072 * 109.15262 * 304.68307 * 28 27 26 30 30 H 1.09003 * 109.46586 * 90.00094 * 1 2 3 31 31 H 1.09004 * 109.47016 * 209.99587 * 1 2 3 32 32 H 1.08997 * 109.47516 * 330.00344 * 1 2 3 33 33 H 1.09007 * 109.46761 * 149.99881 * 3 2 1 34 34 H 1.08994 * 109.47255 * 30.00186 * 3 2 1 35 35 H 1.09001 * 114.16833 * 105.56657 * 6 4 3 36 36 H 1.08993 * 114.34099 * 332.86819 * 6 4 3 37 37 H 1.09003 * 113.47788 * 271.25849 * 7 6 4 38 38 H 1.08996 * 113.47906 * 140.79253 * 7 6 4 39 39 H 1.08999 * 109.46984 * 173.90427 * 9 8 7 40 40 H 1.09001 * 109.46755 * 53.91132 * 9 8 7 41 41 H 0.96996 * 120.00550 * 0.02562 * 12 10 9 42 42 H 0.97006 * 120.00147 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.52502 * 295.11489 * 25 23 21 44 44 H 1.08991 * 109.52617 * 55.31325 * 25 23 21 45 45 H 1.09002 * 109.52818 * 298.05467 * 27 26 25 46 46 H 1.09001 * 109.52444 * 177.85659 * 27 26 25 47 47 H 1.09004 * 109.52502 * 184.78527 * 28 27 26 48 48 H 1.09000 * 109.52604 * 64.58987 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2505 1.1441 -1.9225 6 6 2.6014 3.2303 -1.5993 7 6 1.7995 3.0022 -2.8883 8 7 1.2251 1.8006 -2.2550 9 6 1.1443 0.6888 -3.2118 10 6 0.1542 1.0296 -4.2956 11 8 -0.5029 2.0462 -4.2188 12 7 -0.0050 0.2021 -5.3473 13 6 -0.9061 0.5119 -6.3331 14 1 -1.4881 1.4193 -6.2670 15 6 -1.0707 -0.3415 -7.4172 16 7 -1.9341 -0.0443 -8.3622 17 14 -0.0637 -1.9106 -7.5319 18 1 -0.7954 -3.0182 -6.8663 19 1 0.1593 -2.2525 -8.9597 20 1 1.2456 -1.7087 -6.8610 21 6 2.1389 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0001 23 6 1.3855 -2.4723 -0.0017 24 1 0.6910 -2.4928 0.8382 25 6 0.6083 -2.6134 -1.3137 26 8 -0.0133 -3.9014 -1.3548 27 6 0.9110 -4.9872 -1.2377 28 6 1.6882 -4.8461 0.0744 29 8 2.3098 -3.5581 0.1155 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.1499 1.1384 0.5139 34 1 1.6084 2.0284 0.5138 35 1 3.6260 3.5636 -1.7643 36 1 2.0753 3.8136 -0.8438 37 1 2.4232 2.7805 -3.7543 38 1 1.0643 3.7823 -3.0862 39 1 0.8196 -0.2135 -2.6937 40 1 2.1253 0.5197 -3.6559 41 1 0.5173 -0.6131 -5.4066 42 1 -2.0487 -0.6399 -9.1192 43 1 -0.1559 -1.8382 -1.3696 44 1 1.2933 -2.5124 -2.1555 45 1 1.6063 -4.9661 -2.0769 46 1 0.3661 -5.9313 -1.2385 47 1 2.4525 -5.6213 0.1303 48 1 1.0032 -4.9472 0.9162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230823708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:02 Heat of formation + Delta-G solvation = -122.214082 kcal Electronic energy + Delta-G solvation = -32155.240386 eV Core-core repulsion = 27825.719522 eV Total energy + Delta-G solvation = -4329.520864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02739 -41.30616 -40.08373 -39.54596 -37.21343 -36.50080 -36.01872 -33.82000 -33.21563 -32.11177 -30.23475 -28.86283 -27.69194 -27.63139 -25.94582 -25.20754 -24.32539 -22.72562 -21.34085 -20.95917 -20.36032 -20.30253 -18.57379 -18.09983 -17.85239 -17.74606 -17.32558 -17.20833 -16.80733 -16.71082 -16.50807 -16.41772 -15.85426 -15.50889 -15.31085 -15.05905 -14.86133 -14.54841 -14.41019 -14.33054 -14.09422 -13.93713 -13.73451 -13.52633 -13.12728 -13.01710 -12.90396 -12.72740 -12.48156 -12.41661 -12.41129 -12.05822 -11.97250 -11.93015 -11.70605 -11.60476 -11.50732 -10.82285 -10.48969 -10.32500 -10.28762 -9.98106 -9.58009 -8.45053 -6.05135 1.24624 1.29207 1.35920 1.37186 1.61760 1.87266 2.17098 2.58387 2.61520 2.74740 3.09338 3.16050 3.30932 3.42714 3.54192 3.71745 3.79282 3.91349 4.01149 4.03200 4.13228 4.18224 4.20285 4.24084 4.30492 4.34114 4.39719 4.44102 4.45342 4.58705 4.67604 4.74146 4.76675 4.82755 4.87441 5.00169 5.01902 5.22012 5.32033 5.42803 5.49309 5.81825 5.83062 5.88230 5.98373 6.27032 6.54131 6.83412 7.00106 7.33833 7.88620 8.72279 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.004796 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.541710 B = 5836.296140 C = 8375.677849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.070 0.930 6 C -0.112 4.112 7 C 0.001 3.999 8 N -0.443 5.443 9 C 0.023 3.977 10 C 0.454 3.546 11 O -0.598 6.598 12 N -0.592 5.592 13 C -0.324 4.324 14 H 0.061 0.939 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.953 3.047 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.241 1.241 21 C 0.518 3.482 22 O -0.560 6.560 23 C 0.044 3.956 24 H 0.117 0.883 25 C 0.030 3.970 26 O -0.383 6.383 27 C 0.012 3.988 28 C 0.022 3.978 29 O -0.380 6.380 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.385 0.615 42 H 0.280 0.720 43 H 0.123 0.877 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.134 0.866 47 H 0.130 0.870 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -7.810 21.410 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.016 3.984 4 C -0.103 4.103 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.128 4.128 8 N -0.166 5.166 9 C -0.109 4.109 10 C 0.242 3.758 11 O -0.482 6.482 12 N -0.234 5.234 13 C -0.453 4.453 14 H 0.079 0.921 15 C -0.207 4.207 16 N -0.570 5.570 17 Si 0.774 3.226 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.165 1.165 21 C 0.305 3.695 22 O -0.438 6.438 23 C -0.018 4.018 24 H 0.134 0.866 25 C -0.047 4.047 26 O -0.302 6.302 27 C -0.065 4.065 28 C -0.054 4.054 29 O -0.299 6.299 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.220 0.780 42 H 0.089 0.911 43 H 0.141 0.859 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.152 0.848 47 H 0.148 0.852 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.362 -7.184 21.570 24.587 hybrid contribution 0.810 -0.992 -1.575 2.030 sum 10.171 -8.176 19.995 23.877 Atomic orbital electron populations 1.22197 0.77442 1.04968 1.02596 1.47723 1.08163 1.05065 1.71856 1.21611 0.98188 0.84206 0.94430 1.23960 0.91824 0.98140 0.96342 0.91246 1.23166 1.01406 0.93750 0.96696 1.23576 0.97319 0.94751 0.97153 1.68831 1.31889 1.01933 1.13923 1.22408 0.97278 0.97919 0.93280 1.20583 0.86643 0.84761 0.83849 1.90550 1.50369 1.28319 1.78952 1.42089 1.37971 1.22592 1.20725 1.18984 1.17508 1.08360 1.00468 0.92127 1.25961 0.98109 1.02193 0.94440 1.69778 1.36170 1.39660 1.11388 0.85525 0.79532 0.78262 0.79272 1.17954 1.19659 1.16493 1.20239 0.87466 0.85377 0.76376 1.90695 1.15138 1.87527 1.50411 1.22577 0.91838 0.86809 1.00539 0.86591 1.23339 0.98537 0.87498 0.95327 1.88148 1.33763 1.14071 1.94231 1.23571 0.93747 0.91501 0.97652 1.23580 0.99399 0.84669 0.97767 1.88178 1.32889 1.14395 1.94407 0.92846 0.89365 0.88508 0.89459 0.87140 0.88569 0.86925 0.92805 0.91354 0.87940 0.91719 0.78047 0.91081 0.85894 0.92888 0.92396 0.84797 0.85214 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 8.48 127.77 1.08 2.22 16 2 N -0.60 -11.76 2.78 -846.76 -2.35 -14.11 16 3 C 0.14 2.53 5.60 86.38 0.48 3.02 16 4 C 0.01 0.17 3.37 42.18 0.14 0.31 16 5 H 0.07 1.70 7.64 -2.38 -0.02 1.68 16 6 C -0.11 -2.10 8.00 30.94 0.25 -1.85 16 7 C 0.00 0.03 6.36 83.57 0.53 0.56 16 8 N -0.44 -12.68 5.20 -906.82 -4.71 -17.39 16 9 C 0.02 0.75 5.17 85.55 0.44 1.19 16 10 C 0.45 20.52 7.47 87.66 0.66 21.17 16 11 O -0.60 -32.24 14.99 -3.07 -0.05 -32.29 16 12 N -0.59 -28.33 5.09 -306.99 -1.56 -29.89 16 13 C -0.32 -18.91 10.16 84.04 0.85 -18.06 16 14 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 15 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 16 N -0.93 -55.78 13.96 21.66 0.30 -55.48 16 17 Si 0.95 39.59 27.74 68.60 1.90 41.50 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.24 -8.77 6.52 99.48 0.65 -8.12 16 21 C 0.52 12.67 7.10 87.66 0.62 13.29 16 22 O -0.56 -18.02 16.09 15.90 0.26 -17.77 16 23 C 0.04 0.92 2.44 29.90 0.07 0.99 16 24 H 0.12 1.85 7.13 -2.38 -0.02 1.84 16 25 C 0.03 0.66 5.54 72.03 0.40 1.06 16 26 O -0.38 -8.52 10.85 -136.01 -1.48 -10.00 16 27 C 0.01 0.19 7.05 72.03 0.51 0.70 16 28 C 0.02 0.33 7.05 72.03 0.51 0.84 16 29 O -0.38 -8.95 10.03 -122.90 -1.23 -10.19 16 30 H 0.05 1.12 5.45 -2.39 -0.01 1.11 16 31 H 0.09 1.05 6.05 -2.38 -0.01 1.03 16 32 H 0.10 1.31 7.89 -2.39 -0.02 1.29 16 33 H 0.09 1.66 7.42 -2.38 -0.02 1.64 16 34 H 0.11 1.54 7.63 -2.39 -0.02 1.52 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.74 7.94 -2.39 -0.02 1.72 16 37 H 0.05 1.63 7.83 -2.39 -0.02 1.61 16 38 H 0.07 2.30 7.97 -2.39 -0.02 2.28 16 39 H 0.10 2.99 6.17 -2.39 -0.01 2.97 16 40 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16 41 H 0.38 15.84 5.76 -92.71 -0.53 15.31 16 42 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 43 H 0.12 2.50 5.01 -2.39 -0.01 2.49 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -81.89 378.74 -1.50 -83.40 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.40 Total: 36.73 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 7.02 Total: 25.49 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -8.33 Total: -116.87 kcal Atomic # 8 Polarization: -67.74 SS G_CDS: -2.50 Total: -70.24 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.90 Total: 41.50 kcal Total: -81.89 -1.50 -83.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230823708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.818 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds