Wall clock time and date at job start Wed Apr 1 2020 00:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47318 * 2 1 4 4 C 1.46504 * 120.00068 * 89.99451 * 3 2 1 5 5 C 1.53006 * 109.46883 * 90.00086 * 4 3 2 6 6 N 1.46898 * 109.47006 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99673 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47420 * 34.99540 * 7 6 5 9 9 C 1.53003 * 109.46748 * 274.99491 * 7 6 5 10 10 C 1.50697 * 109.47082 * 155.00305 * 7 6 5 11 11 N 1.30517 * 126.34874 * 44.68266 * 10 7 6 12 12 N 1.28605 * 109.67352 * 179.82912 * 11 10 7 13 13 C 1.30516 * 109.66917 * 0.44659 * 12 11 10 14 14 N 1.35495 * 107.31197 * 359.73449 * 13 12 11 15 15 C 1.46499 * 126.98299 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00316 * 270.00030 * 3 2 1 17 17 O 1.21275 * 120.00054 * 179.97438 * 16 3 2 18 18 C 1.50698 * 119.99529 * 359.97438 * 16 3 2 19 19 S 1.81001 * 109.46901 * 179.97438 * 18 16 3 20 20 C 1.76201 * 100.00235 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99611 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99659 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00116 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47180 * 89.99828 * 24 22 20 26 26 H 1.48499 * 109.47129 * 209.99833 * 24 22 20 27 27 H 1.48504 * 109.47186 * 329.99799 * 24 22 20 28 28 H 1.08994 * 109.47382 * 299.99818 * 1 2 3 29 29 H 1.08999 * 109.46903 * 60.00350 * 1 2 3 30 30 H 1.09009 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47228 * 239.99885 * 2 1 3 32 32 H 1.09000 * 109.46892 * 120.00207 * 2 1 3 33 33 H 1.09001 * 109.46891 * 330.00520 * 4 3 2 34 34 H 1.08993 * 109.47378 * 209.99892 * 4 3 2 35 35 H 1.09001 * 109.46801 * 300.00349 * 5 4 3 36 36 H 1.09001 * 109.46998 * 59.99945 * 5 4 3 37 37 H 1.00897 * 111.00027 * 303.95091 * 6 5 4 38 38 H 1.08995 * 109.47200 * 300.00184 * 9 7 6 39 39 H 1.09005 * 109.46884 * 60.00479 * 9 7 6 40 40 H 1.09004 * 109.47165 * 180.02562 * 9 7 6 41 41 H 1.08000 * 126.34587 * 179.73191 * 13 12 11 42 42 H 1.08992 * 109.46950 * 269.99838 * 15 14 13 43 43 H 1.09001 * 109.47431 * 29.99810 * 15 14 13 44 44 H 1.09003 * 109.46913 * 149.99422 * 15 14 13 45 45 H 1.08996 * 109.47466 * 299.99867 * 18 16 3 46 46 H 1.09004 * 109.47173 * 60.00346 * 18 16 3 47 47 H 0.97001 * 119.99175 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.7075 1.8313 1.7105 6 7 3.9521 2.5234 2.9830 7 6 5.3330 2.3148 3.4386 8 1 5.9980 2.2740 2.5760 9 6 5.4210 0.9983 4.2132 10 6 5.7433 3.4538 4.3359 11 7 5.0306 3.9782 5.2954 12 7 5.6916 4.9282 5.8562 13 6 6.8522 5.0592 5.2737 14 7 6.9182 4.1274 4.2923 15 6 8.0336 3.8949 3.3714 16 6 2.2430 2.0165 -1.1672 17 8 2.6469 3.1601 -1.1671 18 6 1.9924 1.3059 -2.4722 19 16 2.3836 2.4152 -3.8480 20 6 2.0118 1.3587 -5.2082 21 1 1.6573 0.3541 -5.0305 22 6 2.1744 1.8175 -6.5081 23 7 1.8961 1.0283 -7.5242 24 14 2.7881 3.5548 -6.8154 25 1 4.2709 3.5489 -6.8962 26 1 2.2248 4.0600 -8.0931 27 1 2.3566 4.4366 -5.7011 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 3.8744 0.7621 1.8408 36 1 4.3883 2.2154 0.9509 37 1 3.7418 3.5072 2.9058 38 1 4.7560 1.0391 5.0758 39 1 5.1242 0.1743 3.5642 40 1 6.4455 0.8437 4.5518 41 1 7.6181 5.7773 5.5270 42 1 7.9020 4.5072 2.4794 43 1 8.9704 4.1620 3.8605 44 1 8.0584 2.8423 3.0892 45 1 2.6229 0.4187 -2.5298 46 1 0.9445 1.0114 -2.5302 47 1 2.0101 1.3489 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320683264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:03 Heat of formation + Delta-G solvation = 49.361382 kcal Electronic energy + Delta-G solvation = -27017.248995 eV Core-core repulsion = 23170.213824 eV Total energy + Delta-G solvation = -3847.035172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.49070 -39.78486 -37.52981 -35.89936 -35.41570 -32.85191 -32.46690 -30.62547 -29.89661 -29.47938 -28.12630 -27.10664 -25.63211 -24.14574 -23.41320 -22.87338 -22.14958 -20.60462 -19.12707 -17.78113 -17.60705 -16.95301 -16.79155 -16.34508 -16.23664 -15.79677 -15.21573 -15.00755 -14.89603 -14.45890 -14.01657 -13.91212 -13.85645 -13.65462 -13.49794 -13.39982 -13.11646 -12.84755 -12.80838 -12.37151 -12.22641 -12.07533 -11.89075 -11.81401 -11.70800 -11.30149 -11.17311 -11.14709 -11.02722 -10.66845 -10.61552 -10.59658 -9.88648 -9.61761 -9.51831 -9.03465 -8.86898 -8.67608 -8.52131 -6.95258 -6.31825 -4.03648 1.38098 2.00049 2.55447 2.66730 2.88738 3.11795 3.29404 3.47396 3.53365 3.73770 3.81242 4.08616 4.21837 4.29898 4.45488 4.50718 4.56442 4.74061 4.78824 4.80428 4.89440 4.96519 5.03339 5.07082 5.15711 5.18755 5.24666 5.30735 5.36561 5.41863 5.45478 5.66014 5.67827 5.69398 5.73760 5.78859 5.88475 5.90622 5.95153 6.17762 6.36730 6.48386 6.65069 6.96315 7.42163 7.91322 8.38693 8.40256 8.40914 9.14409 10.77371 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002298 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.567329 B =12179.321727 C =13505.364835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.617 5.617 4 C 0.121 3.879 5 C 0.043 3.957 6 N -0.667 5.667 7 C 0.179 3.821 8 H 0.060 0.940 9 C -0.135 4.135 10 C 0.167 3.833 11 N -0.268 5.268 12 N -0.298 5.298 13 C 0.148 3.852 14 N -0.476 5.476 15 C 0.068 3.932 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.121 4.121 19 S -0.146 6.146 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.350 0.650 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.219 0.781 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 -0.719 24.191 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.352 5.352 4 C -0.002 4.002 5 C -0.087 4.087 6 N -0.300 5.300 7 C 0.066 3.934 8 H 0.078 0.922 9 C -0.194 4.194 10 C -0.101 4.101 11 N -0.108 5.108 12 N -0.137 5.137 13 C -0.139 4.139 14 N -0.167 5.167 15 C -0.075 4.075 16 C 0.320 3.680 17 O -0.394 6.394 18 C -0.271 4.271 19 S 0.081 5.919 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.170 0.830 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.235 0.765 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.683 0.692 25.305 27.103 hybrid contribution 1.541 -0.328 -1.964 2.518 sum 11.224 0.364 23.341 25.902 Atomic orbital electron populations 1.22220 0.95745 1.02382 1.02804 1.21589 0.94701 0.82160 1.03346 1.47936 1.67278 1.14646 1.05381 1.21226 0.95115 0.98993 0.84897 1.22439 0.97714 0.99615 0.88947 1.60448 1.20875 1.18279 1.30428 1.19774 0.90318 0.89925 0.93365 0.92245 1.21787 1.01720 0.94610 1.01239 1.24881 0.84705 0.99513 1.00983 1.74328 1.24172 1.05944 1.06372 1.74333 1.02910 1.13499 1.23003 1.26494 1.00416 0.96489 0.90485 1.46252 1.15651 1.26943 1.27893 1.22183 0.87636 1.04388 0.93281 1.20335 0.76450 0.86457 0.84754 1.90684 1.44273 1.17527 1.86902 1.23338 1.05467 1.03198 0.95141 1.84780 1.88129 1.21380 0.97639 1.22299 1.51765 1.01836 0.90846 0.89379 1.24715 0.93808 0.97909 0.94895 1.69942 1.46584 1.36237 0.98876 0.86737 0.80183 0.85095 0.79844 1.19283 1.19931 1.15938 0.92329 0.91939 0.91432 0.89900 0.90351 0.89604 0.89966 0.90504 0.94341 0.83034 0.90602 0.91250 0.92692 0.76478 0.89572 0.88618 0.88958 0.88615 0.88418 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.11 1.03 5.93 -4.05 -0.02 1.00 16 3 N -0.62 -7.86 2.47 -173.69 -0.43 -8.29 16 4 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 5 C 0.04 0.43 5.81 -3.82 -0.02 0.41 16 6 N -0.67 -6.46 6.30 -107.95 -0.68 -7.14 16 7 C 0.18 1.51 2.93 -68.86 -0.20 1.30 16 8 H 0.06 0.44 6.89 -51.93 -0.36 0.08 16 9 C -0.13 -1.00 9.40 37.16 0.35 -0.65 16 10 C 0.17 1.66 6.52 -154.99 -1.01 0.65 16 11 N -0.27 -3.48 12.21 32.80 0.40 -3.08 16 12 N -0.30 -3.69 12.21 29.69 0.36 -3.33 16 13 C 0.15 1.20 12.74 -89.95 -1.15 0.05 16 14 N -0.48 -3.53 3.15 -122.69 -0.39 -3.91 16 15 C 0.07 0.22 10.84 59.85 0.65 0.87 16 16 C 0.53 9.30 7.69 -10.99 -0.08 9.21 16 17 O -0.52 -10.92 15.44 5.56 0.09 -10.83 16 18 C -0.12 -2.30 4.71 36.00 0.17 -2.13 16 19 S -0.15 -3.64 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 21 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 24 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.71 7.22 -51.93 -0.38 0.34 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 35 H 0.08 0.68 7.44 -51.93 -0.39 0.29 16 36 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 37 H 0.35 3.80 8.35 -39.29 -0.33 3.47 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.46 7.45 -51.93 -0.39 0.07 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 44 H 0.09 0.22 7.46 -51.93 -0.39 -0.16 16 45 H 0.10 1.69 7.40 -51.92 -0.38 1.30 16 46 H 0.10 1.76 7.19 -51.91 -0.37 1.39 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -36.96 401.70 -8.77 -45.73 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.49 Total: 0.07 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.75 Total: -1.01 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.04 Total: -51.23 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.96 -8.77 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320683264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.091 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds