Wall clock time and date at job start Wed Apr 1 2020 00:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47318 * 2 1 4 4 C 1.46504 * 120.00068 * 89.99451 * 3 2 1 5 5 C 1.53006 * 109.46883 * 90.00086 * 4 3 2 6 6 N 1.46898 * 109.47006 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99673 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47420 * 34.99540 * 7 6 5 9 9 C 1.53003 * 109.46748 * 274.99491 * 7 6 5 10 10 C 1.50697 * 109.47082 * 155.00305 * 7 6 5 11 11 N 1.30517 * 126.34874 * 44.68266 * 10 7 6 12 12 N 1.28605 * 109.67352 * 179.82912 * 11 10 7 13 13 C 1.30516 * 109.66917 * 0.44659 * 12 11 10 14 14 N 1.35495 * 107.31197 * 359.73449 * 13 12 11 15 15 C 1.46499 * 126.98299 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00316 * 270.00030 * 3 2 1 17 17 O 1.21275 * 120.00054 * 179.97438 * 16 3 2 18 18 C 1.50698 * 119.99529 * 359.97438 * 16 3 2 19 19 S 1.81001 * 109.46901 * 179.97438 * 18 16 3 20 20 C 1.76201 * 100.00235 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99611 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99659 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00116 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47180 * 89.99828 * 24 22 20 26 26 H 1.48499 * 109.47129 * 209.99833 * 24 22 20 27 27 H 1.48504 * 109.47186 * 329.99799 * 24 22 20 28 28 H 1.08994 * 109.47382 * 299.99818 * 1 2 3 29 29 H 1.08999 * 109.46903 * 60.00350 * 1 2 3 30 30 H 1.09009 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47228 * 239.99885 * 2 1 3 32 32 H 1.09000 * 109.46892 * 120.00207 * 2 1 3 33 33 H 1.09001 * 109.46891 * 330.00520 * 4 3 2 34 34 H 1.08993 * 109.47378 * 209.99892 * 4 3 2 35 35 H 1.09001 * 109.46801 * 300.00349 * 5 4 3 36 36 H 1.09001 * 109.46998 * 59.99945 * 5 4 3 37 37 H 1.00897 * 111.00027 * 303.95091 * 6 5 4 38 38 H 1.08995 * 109.47200 * 300.00184 * 9 7 6 39 39 H 1.09005 * 109.46884 * 60.00479 * 9 7 6 40 40 H 1.09004 * 109.47165 * 180.02562 * 9 7 6 41 41 H 1.08000 * 126.34587 * 179.73191 * 13 12 11 42 42 H 1.08992 * 109.46950 * 269.99838 * 15 14 13 43 43 H 1.09001 * 109.47431 * 29.99810 * 15 14 13 44 44 H 1.09003 * 109.46913 * 149.99422 * 15 14 13 45 45 H 1.08996 * 109.47466 * 299.99867 * 18 16 3 46 46 H 1.09004 * 109.47173 * 60.00346 * 18 16 3 47 47 H 0.97001 * 119.99175 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.7075 1.8313 1.7105 6 7 3.9521 2.5234 2.9830 7 6 5.3330 2.3148 3.4386 8 1 5.9980 2.2740 2.5760 9 6 5.4210 0.9983 4.2132 10 6 5.7433 3.4538 4.3359 11 7 5.0306 3.9782 5.2954 12 7 5.6916 4.9282 5.8562 13 6 6.8522 5.0592 5.2737 14 7 6.9182 4.1274 4.2923 15 6 8.0336 3.8949 3.3714 16 6 2.2430 2.0165 -1.1672 17 8 2.6469 3.1601 -1.1671 18 6 1.9924 1.3059 -2.4722 19 16 2.3836 2.4152 -3.8480 20 6 2.0118 1.3587 -5.2082 21 1 1.6573 0.3541 -5.0305 22 6 2.1744 1.8175 -6.5081 23 7 1.8961 1.0283 -7.5242 24 14 2.7881 3.5548 -6.8154 25 1 4.2709 3.5489 -6.8962 26 1 2.2248 4.0600 -8.0931 27 1 2.3566 4.4366 -5.7011 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 3.8744 0.7621 1.8408 36 1 4.3883 2.2154 0.9509 37 1 3.7418 3.5072 2.9058 38 1 4.7560 1.0391 5.0758 39 1 5.1242 0.1743 3.5642 40 1 6.4455 0.8437 4.5518 41 1 7.6181 5.7773 5.5270 42 1 7.9020 4.5072 2.4794 43 1 8.9704 4.1620 3.8605 44 1 8.0584 2.8423 3.0892 45 1 2.6229 0.4187 -2.5298 46 1 0.9445 1.0114 -2.5302 47 1 2.0101 1.3489 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320683264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:02 Heat of formation + Delta-G solvation = 24.346636 kcal Electronic energy + Delta-G solvation = -27018.333716 eV Core-core repulsion = 23170.213824 eV Total energy + Delta-G solvation = -3848.119893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.15278 -41.03166 -38.34704 -37.00819 -35.99309 -34.67575 -33.66195 -31.47091 -31.16246 -30.28399 -28.51213 -28.14287 -27.75301 -24.89081 -24.31214 -23.61831 -22.92052 -21.27180 -20.49760 -19.47845 -18.37379 -18.07762 -17.54739 -17.31453 -17.10041 -17.01861 -16.66418 -16.24247 -15.76924 -15.66909 -15.22151 -14.91779 -14.81156 -14.72765 -14.49771 -14.24048 -14.04965 -13.80691 -13.57742 -13.46480 -13.35597 -13.04035 -12.99455 -12.82509 -12.76839 -12.64703 -12.57400 -12.43099 -11.99395 -11.96302 -11.86386 -11.35647 -11.17686 -11.15033 -10.94917 -10.53055 -10.34490 -9.79468 -9.60048 -9.00897 -8.52036 -6.22909 0.76830 0.97214 1.29616 1.44389 1.48078 1.52123 1.55361 1.83577 2.03831 2.23998 2.67383 2.86122 3.04574 3.11496 3.55339 3.70430 3.83475 3.91254 3.98031 4.05180 4.09820 4.15524 4.23936 4.31366 4.40400 4.42891 4.45540 4.50992 4.61409 4.62003 4.67699 4.77408 4.82421 4.86920 4.88035 4.99627 5.03855 5.11170 5.29911 5.38187 5.53969 5.70498 5.81511 5.92609 6.11102 6.11564 6.25572 6.93221 7.08370 7.70821 8.60254 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002298 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.567329 B =12179.321727 C =13505.364835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.600 5.600 4 C 0.122 3.878 5 C 0.056 3.944 6 N -0.669 5.669 7 C 0.179 3.821 8 H 0.074 0.926 9 C -0.128 4.128 10 C 0.162 3.838 11 N -0.313 5.313 12 N -0.351 5.351 13 C 0.162 3.838 14 N -0.474 5.474 15 C 0.060 3.940 16 C 0.533 3.467 17 O -0.562 6.562 18 C -0.106 4.106 19 S -0.179 6.179 20 C -0.526 4.526 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.239 1.239 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.017 0.983 37 H 0.341 0.659 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.260 0.740 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -1.290 25.483 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.334 5.334 4 C -0.001 4.001 5 C -0.074 4.074 6 N -0.301 5.301 7 C 0.067 3.933 8 H 0.092 0.908 9 C -0.187 4.187 10 C -0.107 4.107 11 N -0.153 5.153 12 N -0.190 5.190 13 C -0.126 4.126 14 N -0.164 5.164 15 C -0.081 4.081 16 C 0.321 3.679 17 O -0.441 6.441 18 C -0.256 4.256 19 S 0.047 5.953 20 C -0.674 4.674 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.163 1.163 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.036 0.964 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.276 0.724 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.167 0.070 26.624 28.871 hybrid contribution 1.083 -0.257 -2.232 2.494 sum 12.250 -0.186 24.391 27.295 Atomic orbital electron populations 1.22199 0.95305 1.03494 1.01891 1.21911 0.95023 0.80294 1.05138 1.47916 1.65436 1.15611 1.04413 1.21339 0.96721 0.97715 0.84305 1.22293 0.96098 1.00558 0.88450 1.60484 1.22069 1.17636 1.29933 1.19893 0.89751 0.90004 0.93662 0.90816 1.21743 1.02125 0.94280 1.00559 1.25067 0.85417 0.99735 1.00526 1.74205 1.25912 1.07159 1.08051 1.74216 1.05015 1.14700 1.25064 1.27261 0.99862 0.96189 0.89305 1.46489 1.15807 1.26081 1.28019 1.22533 0.87355 1.05234 0.92980 1.20036 0.76580 0.85887 0.85421 1.90671 1.46715 1.19219 1.87473 1.23307 1.06385 1.02293 0.93638 1.84706 1.88404 1.23095 0.99049 1.22431 1.51192 1.01341 0.92399 0.91886 1.25550 0.94050 1.01565 0.94807 1.70018 1.47758 1.38087 0.99510 0.85879 0.79962 0.80604 0.79999 1.18577 1.18430 1.16253 0.91721 0.94355 0.89354 0.89937 0.86781 0.87178 0.92289 0.88489 0.96430 0.84073 0.92466 0.90021 0.91420 0.72407 0.89251 0.85697 0.87993 0.86943 0.87392 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.24 71.98 0.74 -2.06 16 2 C 0.10 1.61 5.93 86.38 0.51 2.12 16 3 N -0.60 -14.18 2.47 -821.82 -2.03 -16.21 16 4 C 0.12 2.53 5.67 86.38 0.49 3.02 16 5 C 0.06 1.01 5.81 86.31 0.50 1.51 16 6 N -0.67 -12.28 6.30 -495.44 -3.12 -15.41 16 7 C 0.18 2.76 2.93 44.17 0.13 2.89 16 8 H 0.07 0.93 6.89 -2.39 -0.02 0.92 16 9 C -0.13 -1.65 9.40 71.98 0.68 -0.98 16 10 C 0.16 3.10 6.52 137.98 0.90 4.00 16 11 N -0.31 -8.26 12.21 -50.16 -0.61 -8.87 16 12 N -0.35 -8.72 12.21 -59.99 -0.73 -9.45 16 13 C 0.16 2.38 12.74 180.11 2.30 4.67 16 14 N -0.47 -6.21 3.15 -542.08 -1.71 -7.92 16 15 C 0.06 0.22 10.84 127.77 1.38 1.60 16 16 C 0.53 18.23 7.69 87.66 0.67 18.91 16 17 O -0.56 -23.74 15.44 -3.01 -0.05 -23.79 16 18 C -0.11 -3.95 4.71 71.24 0.34 -3.62 16 19 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 20 C -0.53 -30.28 10.04 67.95 0.68 -29.60 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 22 C 0.05 2.66 5.50 84.86 0.47 3.13 16 23 N -0.92 -55.21 13.97 21.65 0.30 -54.91 16 24 Si 0.91 44.63 27.74 68.60 1.90 46.53 16 25 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.81 7.22 -2.39 -0.02 0.80 16 30 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.42 6.44 -2.39 -0.02 1.40 16 32 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 33 H 0.11 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 35 H 0.10 1.38 7.44 -2.39 -0.02 1.36 16 36 H 0.02 0.40 8.06 -2.39 -0.02 0.38 16 37 H 0.34 7.43 8.35 -89.70 -0.75 6.68 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.84 7.45 -2.38 -0.02 0.82 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.26 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.10 0.20 7.46 -2.39 -0.02 0.18 16 45 H 0.11 3.83 7.40 -2.40 -0.02 3.81 16 46 H 0.11 3.83 7.19 -2.39 -0.02 3.81 16 47 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.47 401.70 2.88 -80.59 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.19 Total: 13.85 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 9.78 Total: 5.61 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -7.90 Total: -112.76 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -83.47 2.88 -80.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320683264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.937 kcal (2) G-P(sol) polarization free energy of solvation -83.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds