Wall clock time and date at job start Wed Apr 1 2020 00:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00084 * 2 1 4 4 O 1.20829 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99977 * 180.02562 * 3 2 1 6 6 H 1.08994 * 115.55244 * 52.49968 * 5 3 2 7 7 C 1.53083 * 117.52990 * 198.20914 * 5 3 2 8 8 C 1.53003 * 117.49622 * 266.82082 * 5 3 2 9 9 H 1.09000 * 117.49260 * 144.98020 * 8 5 3 10 10 C 1.50695 * 117.49941 * 359.97438 * 8 5 3 11 11 O 1.21275 * 120.00196 * 261.97074 * 10 8 5 12 12 N 1.34784 * 119.99935 * 81.97073 * 10 8 5 13 13 C 1.46506 * 119.99632 * 359.97438 * 12 10 8 14 14 C 1.46496 * 120.00103 * 179.97438 * 12 10 8 15 15 C 1.53003 * 109.46758 * 90.00011 * 14 12 10 16 16 N 1.46906 * 109.46738 * 180.02562 * 15 14 12 17 17 C 1.46902 * 110.99798 * 293.95128 * 16 15 14 18 18 C 1.46904 * 110.99542 * 169.99983 * 16 15 14 19 19 C 1.50706 * 109.46749 * 189.99888 * 18 16 15 20 20 O 1.21294 * 120.00088 * 0.02562 * 19 18 16 21 21 N 1.34773 * 119.99864 * 180.02562 * 19 18 16 22 22 C 1.37103 * 120.00055 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99718 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00141 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00141 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47124 * 90.00061 * 26 24 22 28 28 H 1.48507 * 109.47228 * 209.99930 * 26 24 22 29 29 H 1.48497 * 109.47473 * 329.99964 * 26 24 22 30 30 H 1.09000 * 109.47500 * 300.00363 * 1 2 3 31 31 H 1.09000 * 109.47221 * 59.99976 * 1 2 3 32 32 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 33 33 H 1.09002 * 117.51034 * 359.97438 * 7 5 3 34 34 H 1.08992 * 117.49340 * 214.95722 * 7 5 3 35 35 H 1.08994 * 109.47450 * 269.99968 * 13 12 10 36 36 H 1.09002 * 109.47055 * 30.00907 * 13 12 10 37 37 H 1.09005 * 109.46708 * 150.00424 * 13 12 10 38 38 H 1.08998 * 109.46996 * 330.00253 * 14 12 10 39 39 H 1.08994 * 109.47076 * 209.99293 * 14 12 10 40 40 H 1.08998 * 109.47169 * 60.00348 * 15 14 12 41 41 H 1.08996 * 109.47414 * 299.99808 * 15 14 12 42 42 H 1.08996 * 109.46988 * 60.00434 * 17 16 15 43 43 H 1.09005 * 109.46636 * 180.02562 * 17 16 15 44 44 H 1.08993 * 109.47171 * 299.99799 * 17 16 15 45 45 H 1.08997 * 109.47062 * 309.99790 * 18 16 15 46 46 H 1.08993 * 109.47181 * 70.00184 * 18 16 15 47 47 H 0.96996 * 120.00198 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99995 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0668 0.7018 -0.7810 7 6 4.2056 2.5995 0.4236 8 6 4.2683 1.3867 1.3543 9 1 5.2306 0.8868 1.4652 10 6 3.4019 1.4102 2.5870 11 8 3.1192 2.4675 3.1094 12 7 2.9413 0.2561 3.1091 13 6 3.2825 -1.0211 2.4776 14 6 2.0995 0.2788 4.3078 15 6 0.6294 0.3819 3.8967 16 7 -0.2147 0.4053 5.0988 17 6 -0.1418 -0.8734 5.8182 18 6 -1.6043 0.7401 4.7598 19 6 -2.3824 0.9957 6.0249 20 8 -1.8332 0.9080 7.1028 21 7 -3.6884 1.3217 5.9585 22 6 -4.3961 1.5547 7.1094 23 1 -3.9071 1.4766 8.0692 24 6 -5.7427 1.8903 7.0410 25 7 -6.3379 1.9848 5.8732 26 14 -6.7071 2.2070 8.6091 27 1 -6.6214 3.6473 8.9605 28 1 -8.1288 1.8322 8.4002 29 1 -6.1379 1.3935 9.7133 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.5376 3.4144 0.7028 34 1 5.1263 2.8973 -0.0779 35 1 2.5286 -1.2702 1.7309 36 1 4.2573 -0.9397 1.9968 37 1 3.3155 -1.8038 3.2356 38 1 2.3660 1.1385 4.9226 39 1 2.2540 -0.6373 4.8777 40 1 0.3629 -0.4779 3.2819 41 1 0.4748 1.2980 3.3268 42 1 0.8887 -1.0631 6.1184 43 1 -0.7762 -0.8289 6.7035 44 1 -0.4842 -1.6771 5.1664 45 1 -1.6209 1.6340 4.1362 46 1 -2.0560 -0.0900 4.2169 47 1 -4.1275 1.3922 5.0965 48 1 -7.2780 2.2187 5.8255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667545695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:22 Heat of formation + Delta-G solvation = -105.683171 kcal Electronic energy + Delta-G solvation = -30854.447786 eV Core-core repulsion = 26525.643756 eV Total energy + Delta-G solvation = -4328.804030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25045 -39.96461 -38.62170 -37.46396 -36.68337 -36.12079 -35.42376 -33.80943 -31.22438 -30.16135 -28.51269 -27.76066 -26.96258 -25.94494 -25.02305 -24.47911 -23.10315 -21.17265 -20.82874 -19.44659 -19.10362 -18.27811 -17.81047 -17.32332 -17.07384 -16.64969 -16.17366 -16.01365 -15.67388 -15.23057 -14.91169 -14.75537 -14.51590 -14.05361 -13.88688 -13.52862 -13.44660 -13.40114 -13.21582 -13.17848 -12.92983 -12.58876 -12.44496 -12.25777 -12.08186 -12.02541 -11.49026 -11.30558 -11.27725 -11.26097 -11.18514 -11.06868 -10.90605 -10.78084 -10.76484 -10.36921 -10.18940 -10.05282 -9.44510 -8.96180 -8.39524 -7.94762 -7.83160 -6.38507 -3.79150 1.72676 2.22086 2.26154 2.60994 3.20215 3.20391 3.28652 3.34398 3.93505 3.95503 4.07372 4.15063 4.18597 4.32428 4.46718 4.63780 4.83509 4.86311 4.91347 4.96348 5.03390 5.09769 5.12877 5.22362 5.24956 5.28915 5.31414 5.45791 5.47209 5.64586 5.66418 5.68789 5.82676 5.91143 5.98324 6.04202 6.05544 6.27385 6.32581 6.54550 7.07845 7.26933 7.40566 7.41181 7.58382 7.91579 8.09742 8.65333 9.21426 9.57895 10.09882 10.79406 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002431 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.106526 B =11516.553669 C =12123.835868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.483 3.517 4 O -0.488 6.488 5 C -0.149 4.149 6 H 0.148 0.852 7 C -0.113 4.113 8 C -0.159 4.159 9 H 0.145 0.855 10 C 0.531 3.469 11 O -0.516 6.516 12 N -0.609 5.609 13 C 0.075 3.925 14 C 0.119 3.881 15 C 0.045 3.955 16 N -0.515 5.515 17 C 0.020 3.980 18 C 0.048 3.952 19 C 0.446 3.554 20 O -0.576 6.576 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.013 0.987 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.609 -8.910 -16.879 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.324 3.676 4 O -0.374 6.374 5 C -0.168 4.168 6 H 0.166 0.834 7 C -0.150 4.150 8 C -0.180 4.180 9 H 0.162 0.838 10 C 0.317 3.683 11 O -0.390 6.390 12 N -0.343 5.343 13 C -0.068 4.068 14 C -0.004 4.004 15 C -0.085 4.085 16 N -0.239 5.239 17 C -0.127 4.127 18 C -0.083 4.083 19 C 0.231 3.769 20 O -0.461 6.461 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.032 0.968 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.545 -7.698 -15.576 27.678 hybrid contribution -1.377 -0.595 -0.555 1.599 sum 20.169 -8.293 -16.131 27.125 Atomic orbital electron populations 1.23345 0.75607 1.03986 1.02983 1.86439 1.23792 1.32754 1.83926 1.22512 0.90328 0.81793 0.72968 1.90740 1.66538 1.36369 1.43755 1.21860 0.88770 1.06173 1.00016 0.83391 1.23195 1.02728 0.91030 0.98050 1.22379 1.01009 1.05973 0.88604 0.83791 1.19627 0.80231 0.83813 0.84661 1.90785 1.57386 1.29967 1.60870 1.47782 1.50645 1.06457 1.29434 1.21912 1.01289 0.84904 0.98715 1.21521 0.88971 1.04130 0.85729 1.22423 0.93198 1.00737 0.92112 1.61452 1.08163 1.32773 1.21499 1.22596 1.02392 0.87763 0.99992 1.21852 0.88354 1.00868 0.97269 1.19699 0.82839 0.84399 0.89969 1.90481 1.69157 1.56620 1.29795 1.41863 1.07770 1.60829 1.09693 1.19699 0.91748 1.43696 0.87557 0.87905 1.25258 0.96981 0.97430 0.98327 1.69614 1.12405 1.48688 1.23716 0.85858 0.78338 0.78790 0.81300 1.20389 1.20975 1.19440 0.91609 0.91673 0.87790 0.86212 0.86030 0.91561 0.90997 0.90892 0.88635 0.90090 0.95285 0.90964 0.92153 0.88448 0.96819 0.89511 0.93588 0.77527 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.32 9.25 -39.27 -0.36 -3.68 16 3 C 0.48 5.25 6.70 36.01 0.24 5.49 16 4 O -0.49 -7.22 16.18 -18.75 -0.30 -7.52 16 5 C -0.15 -1.06 6.30 -91.73 -0.58 -1.63 16 6 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 7 C -0.11 -0.85 9.56 -26.69 -0.26 -1.11 16 8 C -0.16 -1.20 4.49 -91.77 -0.41 -1.61 16 9 H 0.14 0.58 7.76 -51.93 -0.40 0.18 16 10 C 0.53 6.41 6.35 -10.98 -0.07 6.34 16 11 O -0.52 -8.72 16.23 5.56 0.09 -8.63 16 12 N -0.61 -6.35 2.87 -181.57 -0.52 -6.87 16 13 C 0.07 0.48 10.31 59.85 0.62 1.10 16 14 C 0.12 1.49 5.37 -4.04 -0.02 1.47 16 15 C 0.04 0.64 5.28 -3.82 -0.02 0.62 16 16 N -0.51 -9.06 4.50 -244.36 -1.10 -10.15 16 17 C 0.02 0.33 8.96 60.07 0.54 0.87 16 18 C 0.05 0.91 5.45 -4.97 -0.03 0.88 16 19 C 0.45 10.86 7.47 -10.98 -0.08 10.78 16 20 O -0.58 -15.85 13.91 5.55 0.08 -15.77 16 21 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 22 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 23 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 26 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.12 1.30 7.62 -51.93 -0.40 0.91 16 34 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.44 6.78 -51.93 -0.35 0.09 16 36 H 0.07 0.30 6.64 -51.93 -0.34 -0.05 16 37 H 0.07 0.38 7.89 -51.93 -0.41 -0.03 16 38 H 0.10 1.46 7.42 -51.93 -0.39 1.07 16 39 H 0.08 0.86 6.30 -51.93 -0.33 0.53 16 40 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.06 0.82 6.47 -51.93 -0.34 0.49 16 43 H 0.10 1.93 5.83 -51.93 -0.30 1.63 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.58 7.93 -51.93 -0.41 1.17 16 46 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 47 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -37.03 401.16 -6.97 -44.00 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.29 Total: 8.77 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 0.76 Total: 16.46 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.96 Total: -56.09 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.50 Total: -35.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.03 -6.97 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667545695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.687 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds