Wall clock time and date at job start Wed Apr 1 2020 00:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00084 * 2 1 4 4 O 1.20829 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99977 * 180.02562 * 3 2 1 6 6 H 1.08994 * 115.55244 * 52.49968 * 5 3 2 7 7 C 1.53083 * 117.52990 * 198.20914 * 5 3 2 8 8 C 1.53003 * 117.49622 * 266.82082 * 5 3 2 9 9 H 1.09000 * 117.49260 * 144.98020 * 8 5 3 10 10 C 1.50695 * 117.49941 * 359.97438 * 8 5 3 11 11 O 1.21275 * 120.00196 * 261.97074 * 10 8 5 12 12 N 1.34784 * 119.99935 * 81.97073 * 10 8 5 13 13 C 1.46506 * 119.99632 * 359.97438 * 12 10 8 14 14 C 1.46496 * 120.00103 * 179.97438 * 12 10 8 15 15 C 1.53003 * 109.46758 * 90.00011 * 14 12 10 16 16 N 1.46906 * 109.46738 * 180.02562 * 15 14 12 17 17 C 1.46902 * 110.99798 * 293.95128 * 16 15 14 18 18 C 1.46904 * 110.99542 * 169.99983 * 16 15 14 19 19 C 1.50706 * 109.46749 * 189.99888 * 18 16 15 20 20 O 1.21294 * 120.00088 * 0.02562 * 19 18 16 21 21 N 1.34773 * 119.99864 * 180.02562 * 19 18 16 22 22 C 1.37103 * 120.00055 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99718 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00141 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00141 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47124 * 90.00061 * 26 24 22 28 28 H 1.48507 * 109.47228 * 209.99930 * 26 24 22 29 29 H 1.48497 * 109.47473 * 329.99964 * 26 24 22 30 30 H 1.09000 * 109.47500 * 300.00363 * 1 2 3 31 31 H 1.09000 * 109.47221 * 59.99976 * 1 2 3 32 32 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 33 33 H 1.09002 * 117.51034 * 359.97438 * 7 5 3 34 34 H 1.08992 * 117.49340 * 214.95722 * 7 5 3 35 35 H 1.08994 * 109.47450 * 269.99968 * 13 12 10 36 36 H 1.09002 * 109.47055 * 30.00907 * 13 12 10 37 37 H 1.09005 * 109.46708 * 150.00424 * 13 12 10 38 38 H 1.08998 * 109.46996 * 330.00253 * 14 12 10 39 39 H 1.08994 * 109.47076 * 209.99293 * 14 12 10 40 40 H 1.08998 * 109.47169 * 60.00348 * 15 14 12 41 41 H 1.08996 * 109.47414 * 299.99808 * 15 14 12 42 42 H 1.08996 * 109.46988 * 60.00434 * 17 16 15 43 43 H 1.09005 * 109.46636 * 180.02562 * 17 16 15 44 44 H 1.08993 * 109.47171 * 299.99799 * 17 16 15 45 45 H 1.08997 * 109.47062 * 309.99790 * 18 16 15 46 46 H 1.08993 * 109.47181 * 70.00184 * 18 16 15 47 47 H 0.96996 * 120.00198 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99995 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0668 0.7018 -0.7810 7 6 4.2056 2.5995 0.4236 8 6 4.2683 1.3867 1.3543 9 1 5.2306 0.8868 1.4652 10 6 3.4019 1.4102 2.5870 11 8 3.1192 2.4675 3.1094 12 7 2.9413 0.2561 3.1091 13 6 3.2825 -1.0211 2.4776 14 6 2.0995 0.2788 4.3078 15 6 0.6294 0.3819 3.8967 16 7 -0.2147 0.4053 5.0988 17 6 -0.1418 -0.8734 5.8182 18 6 -1.6043 0.7401 4.7598 19 6 -2.3824 0.9957 6.0249 20 8 -1.8332 0.9080 7.1028 21 7 -3.6884 1.3217 5.9585 22 6 -4.3961 1.5547 7.1094 23 1 -3.9071 1.4766 8.0692 24 6 -5.7427 1.8903 7.0410 25 7 -6.3379 1.9848 5.8732 26 14 -6.7071 2.2070 8.6091 27 1 -6.6214 3.6473 8.9605 28 1 -8.1288 1.8322 8.4002 29 1 -6.1379 1.3935 9.7133 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.5376 3.4144 0.7028 34 1 5.1263 2.8973 -0.0779 35 1 2.5286 -1.2702 1.7309 36 1 4.2573 -0.9397 1.9968 37 1 3.3155 -1.8038 3.2356 38 1 2.3660 1.1385 4.9226 39 1 2.2540 -0.6373 4.8777 40 1 0.3629 -0.4779 3.2819 41 1 0.4748 1.2980 3.3268 42 1 0.8887 -1.0631 6.1184 43 1 -0.7762 -0.8289 6.7035 44 1 -0.4842 -1.6771 5.1664 45 1 -1.6209 1.6340 4.1362 46 1 -2.0560 -0.0900 4.2169 47 1 -4.1275 1.3922 5.0965 48 1 -7.2780 2.2187 5.8255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667545695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:19 Heat of formation + Delta-G solvation = -134.023081 kcal Electronic energy + Delta-G solvation = -30855.676697 eV Core-core repulsion = 26525.643756 eV Total energy + Delta-G solvation = -4330.032941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05060 -40.88181 -40.39009 -38.47000 -37.84537 -36.96840 -36.51898 -35.84715 -33.32109 -31.32933 -29.25798 -29.23621 -27.64458 -27.26402 -26.32429 -25.55144 -24.15875 -22.30538 -21.61148 -21.06219 -20.21407 -19.88830 -19.03685 -18.16579 -18.00523 -17.74281 -17.57009 -16.91862 -16.69128 -16.64605 -16.43580 -16.04163 -15.68964 -15.63175 -15.21397 -14.95175 -14.69602 -14.32862 -14.18481 -14.03836 -13.93931 -13.80133 -13.48664 -13.25573 -13.16241 -13.11645 -13.02105 -12.89119 -12.66622 -12.56515 -12.43999 -12.13436 -12.01395 -11.90948 -11.87607 -11.66978 -11.56193 -11.48884 -10.97865 -10.37999 -10.03694 -9.77541 -9.27392 -8.48886 -5.97976 0.92973 1.36007 1.38792 1.39759 1.52596 1.54061 1.82279 2.00509 2.26955 2.58356 2.77955 3.17281 3.33246 3.37313 3.54877 3.59069 3.79582 3.85975 3.99006 4.15251 4.18788 4.20674 4.24644 4.28649 4.33563 4.39608 4.43158 4.56185 4.59008 4.63657 4.66661 4.70555 4.80717 4.82534 4.89523 5.03123 5.04828 5.18170 5.28969 5.38400 5.43060 5.79875 6.01800 6.11994 6.29686 6.57171 6.60686 7.05525 7.09779 7.52057 8.07685 8.68787 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002431 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.106526 B =11516.553669 C =12123.835868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.343 6.343 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.136 4.136 6 H 0.199 0.801 7 C -0.123 4.123 8 C -0.150 4.150 9 H 0.194 0.806 10 C 0.516 3.484 11 O -0.581 6.581 12 N -0.605 5.605 13 C 0.066 3.934 14 C 0.124 3.876 15 C 0.058 3.942 16 N -0.539 5.539 17 C 0.026 3.974 18 C 0.061 3.939 19 C 0.443 3.557 20 O -0.611 6.611 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.995 3.005 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.506 -11.456 -18.599 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.258 6.258 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.154 4.154 6 H 0.216 0.784 7 C -0.160 4.160 8 C -0.170 4.170 9 H 0.211 0.789 10 C 0.305 3.695 11 O -0.460 6.460 12 N -0.337 5.337 13 C -0.075 4.075 14 C 0.000 4.000 15 C -0.070 4.070 16 N -0.264 5.264 17 C -0.121 4.121 18 C -0.071 4.071 19 C 0.230 3.770 20 O -0.497 6.497 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.818 3.182 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.195 1.195 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.228 0.772 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.463 -10.311 -17.341 30.944 hybrid contribution -1.968 0.172 -0.036 1.976 sum 21.495 -10.139 -17.377 29.441 Atomic orbital electron populations 1.23480 0.75457 1.05647 1.01785 1.86454 1.24008 1.31999 1.83376 1.23439 0.92051 0.81331 0.71356 1.90730 1.68001 1.38057 1.46197 1.22148 0.86118 1.06285 1.00858 0.78372 1.23288 1.03661 0.90173 0.98895 1.22503 1.01760 1.06498 0.86261 0.78909 1.20562 0.80126 0.83191 0.85624 1.90759 1.59866 1.32346 1.63035 1.47909 1.49361 1.07837 1.28558 1.22255 1.03000 0.83007 0.99231 1.21340 0.88089 1.03798 0.86755 1.22305 0.93779 1.00168 0.90788 1.61382 1.07443 1.34197 1.23403 1.22497 1.03226 0.87705 0.98665 1.21676 0.88985 1.02112 0.94292 1.20625 0.82441 0.82575 0.91379 1.90456 1.69776 1.57633 1.31823 1.41934 1.08479 1.61477 1.09252 1.19675 0.92823 1.46093 0.87591 0.90203 1.26076 0.97237 0.96404 1.01659 1.69679 1.12979 1.48366 1.25265 0.84907 0.77325 0.78660 0.77313 1.19835 1.19327 1.19548 0.93984 0.91832 0.84592 0.90741 0.81908 0.91449 0.87764 0.89157 0.92181 0.87452 0.92815 0.93947 0.89577 0.92466 0.94418 0.89155 0.90954 0.77156 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.34 -5.81 9.25 -51.45 -0.48 -6.28 16 3 C 0.47 9.87 6.70 71.24 0.48 10.35 16 4 O -0.54 -16.72 16.18 21.95 0.36 -16.37 16 5 C -0.14 -1.49 6.30 -11.51 -0.07 -1.57 16 6 H 0.20 0.20 8.14 -2.39 -0.02 0.18 16 7 C -0.12 -1.65 9.56 30.62 0.29 -1.36 16 8 C -0.15 -1.81 4.49 -11.54 -0.05 -1.86 16 9 H 0.19 0.43 7.76 -2.39 -0.02 0.41 16 10 C 0.52 12.19 6.35 87.65 0.56 12.74 16 11 O -0.58 -20.87 16.23 -3.01 -0.05 -20.92 16 12 N -0.60 -11.57 2.87 -846.76 -2.43 -14.00 16 13 C 0.07 0.57 10.31 127.77 1.32 1.89 16 14 C 0.12 3.03 5.37 86.38 0.46 3.50 16 15 C 0.06 1.66 5.28 86.30 0.46 2.12 16 16 N -0.54 -19.07 4.50 -927.03 -4.17 -23.25 16 17 C 0.03 0.83 8.96 127.69 1.14 1.98 16 18 C 0.06 2.34 5.45 85.56 0.47 2.81 16 19 C 0.44 22.34 7.47 87.66 0.66 22.99 16 20 O -0.61 -35.04 13.91 -3.07 -0.04 -35.08 16 21 N -0.57 -30.93 5.29 -306.98 -1.62 -32.55 16 22 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 23 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.92 -51.25 13.05 21.66 0.28 -50.97 16 26 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 30 H 0.04 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.74 7.62 -2.39 -0.02 1.72 16 34 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.62 6.78 -2.39 -0.02 0.60 16 36 H 0.10 0.27 6.64 -2.39 -0.02 0.25 16 37 H 0.09 0.52 7.89 -2.38 -0.02 0.50 16 38 H 0.06 1.92 7.42 -2.39 -0.02 1.90 16 39 H 0.11 2.03 6.30 -2.39 -0.02 2.01 16 40 H 0.05 1.26 8.12 -2.39 -0.02 1.25 16 41 H 0.04 1.46 7.93 -2.39 -0.02 1.44 16 42 H 0.09 2.20 6.47 -2.39 -0.02 2.19 16 43 H 0.06 2.30 5.83 -2.38 -0.01 2.28 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 3.41 7.93 -2.39 -0.02 3.39 16 46 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 47 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 48 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -88.60 401.16 2.31 -86.29 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.25 Total: 30.70 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: 8.18 Total: 36.27 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -7.94 Total: -120.77 kcal Atomic # 8 Polarization: -78.44 SS G_CDS: -0.21 Total: -78.65 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -88.60 2.31 -86.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667545695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.734 kcal (2) G-P(sol) polarization free energy of solvation -88.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds