Wall clock time and date at job start Wed Apr 1 2020 00:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86795 * 120.00141 * 2 1 4 4 H 1.48505 * 109.47232 * 269.99922 * 3 2 1 5 5 H 1.48504 * 109.47025 * 29.99784 * 3 2 1 6 6 H 1.48496 * 109.47625 * 149.99590 * 3 2 1 7 7 C 1.39071 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99926 * 201.88292 * 7 2 1 9 9 N 1.37098 * 120.00430 * 21.88752 * 7 2 1 10 10 C 1.36238 * 119.72003 * 221.60795 * 9 7 2 11 11 C 1.50702 * 118.34149 * 359.97438 * 10 9 7 12 12 N 1.46907 * 109.46729 * 173.66905 * 11 10 9 13 13 C 1.46782 * 111.00103 * 169.75300 * 12 11 10 14 14 C 1.52851 * 110.07347 * 168.47579 * 13 12 11 15 15 C 1.53232 * 109.38600 * 77.04246 * 14 13 12 16 16 C 1.53096 * 108.81381 * 285.43511 * 15 14 13 17 17 C 1.52880 * 109.34311 * 316.36063 * 16 15 14 18 18 C 1.52826 * 109.60730 * 112.57910 * 17 16 15 19 19 C 1.46981 * 111.00289 * 293.96198 * 12 11 10 20 20 N 1.29825 * 123.30536 * 179.67747 * 10 9 7 21 21 C 1.35636 * 121.62161 * 0.60584 * 20 10 9 22 22 C 1.39634 * 121.61665 * 179.68495 * 21 20 10 23 23 C 1.37710 * 119.69355 * 180.02562 * 22 21 20 24 24 C 1.38871 * 120.82330 * 0.02562 * 23 22 21 25 25 C 1.37795 * 120.57564 * 359.95426 * 24 23 22 26 26 C 1.39367 * 119.51739 * 0.04432 * 25 24 23 27 27 C 1.35342 * 119.71728 * 41.87626 * 9 7 2 28 28 O 1.21717 * 121.28714 * 0.02620 * 27 9 7 29 29 H 0.97002 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47459 * 293.66569 * 11 10 9 31 31 H 1.09000 * 109.47475 * 53.67045 * 11 10 9 32 32 H 1.09005 * 109.36694 * 288.66102 * 13 12 11 33 33 H 1.09003 * 109.36793 * 48.28879 * 13 12 11 34 34 H 1.08996 * 109.48624 * 317.06467 * 14 13 12 35 35 H 1.09002 * 109.48157 * 197.01219 * 14 13 12 36 36 H 1.08995 * 109.58142 * 165.63835 * 15 14 13 37 37 H 1.09002 * 109.69093 * 45.29980 * 15 14 13 38 38 H 1.09002 * 109.49306 * 196.39497 * 16 15 14 39 39 H 1.08998 * 109.51147 * 76.33313 * 16 15 14 40 40 H 1.09003 * 109.45254 * 352.53685 * 17 16 15 41 41 H 1.09000 * 109.42692 * 232.60357 * 17 16 15 42 42 H 1.08997 * 109.49240 * 163.99918 * 18 17 16 43 43 H 1.09001 * 109.50908 * 43.94275 * 18 17 16 44 44 H 1.09003 * 109.49541 * 242.56757 * 19 12 11 45 45 H 1.09004 * 109.48928 * 2.65461 * 19 12 11 46 46 H 1.08000 * 120.15454 * 0.04467 * 22 21 20 47 47 H 1.08000 * 119.58586 * 179.97438 * 23 22 21 48 48 H 1.08009 * 119.71494 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.24184 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.4941 2.0464 -1.4001 5 1 1.4440 2.6526 0.7000 6 1 3.5441 1.4402 0.7001 7 6 2.0078 -1.2044 0.0005 8 1 3.0295 -1.2380 0.3492 9 7 1.3965 -2.3492 -0.4415 10 6 1.5802 -3.5174 0.2349 11 6 2.4603 -3.5050 1.4582 12 7 2.4020 -4.8170 2.1165 13 6 3.4236 -4.9254 3.1649 14 6 3.1673 -6.1654 4.0210 15 6 3.6289 -7.4129 3.2604 16 6 2.6155 -7.7203 2.1549 17 6 1.1991 -7.5699 2.7102 18 6 0.5133 -6.3748 2.0492 19 6 1.0591 -5.0774 2.6543 20 7 1.0309 -4.6395 -0.1181 21 6 0.2322 -4.7275 -1.2108 22 6 -0.3534 -5.9358 -1.5940 23 6 -1.1574 -5.9802 -2.7112 24 6 -1.3937 -4.8372 -3.4637 25 6 -0.8276 -3.6329 -3.1057 26 6 -0.0107 -3.5663 -1.9785 27 6 0.6200 -2.3102 -1.5494 28 8 0.4512 -1.2749 -2.1668 29 1 -0.4851 0.8400 -0.0004 30 1 3.4879 -3.2914 1.1643 31 1 2.1124 -2.7364 2.1483 32 1 4.4083 -5.0017 2.7035 33 1 3.3899 -4.0371 3.7957 34 1 2.1018 -6.2445 4.2366 35 1 3.7226 -6.0831 4.9554 36 1 3.6886 -8.2578 3.9464 37 1 4.6085 -7.2318 2.8179 38 1 2.7611 -8.7411 1.8014 39 1 2.7574 -7.0252 1.3273 40 1 1.2466 -7.4108 3.7875 41 1 0.6299 -8.4758 2.5019 42 1 -0.5617 -6.4318 2.2204 43 1 0.7120 -6.3880 0.9775 44 1 1.1143 -5.1766 3.7384 45 1 0.3978 -4.2497 2.3976 46 1 -0.1769 -6.8314 -1.0168 47 1 -1.6091 -6.9158 -3.0063 48 1 -2.0270 -4.8925 -4.3369 49 1 -1.0153 -2.7472 -3.6946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014219966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:40 Heat of formation + Delta-G solvation = 38.444834 kcal Electronic energy + Delta-G solvation = -31624.295262 eV Core-core repulsion = 27744.883106 eV Total energy + Delta-G solvation = -3879.412157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.52787 -39.03972 -37.58575 -36.35624 -34.48380 -33.77324 -32.53112 -31.86251 -30.37094 -29.80092 -28.01455 -25.88174 -25.84348 -25.45384 -22.97058 -22.07709 -21.76688 -21.10935 -20.30737 -18.76245 -18.72296 -17.79063 -16.91306 -16.19206 -15.60329 -15.18155 -15.00121 -14.72477 -14.34365 -14.29414 -13.96004 -13.83168 -13.70852 -13.42413 -13.28448 -13.11335 -12.93701 -12.26104 -12.22449 -12.13682 -11.87372 -11.46367 -11.36343 -11.28101 -11.19988 -11.11056 -10.98432 -10.94973 -10.66350 -10.62517 -10.52842 -10.49923 -10.14519 -9.92526 -9.70528 -9.51152 -8.90743 -8.59360 -8.36661 -8.34070 -7.71539 -7.03291 -6.70331 -4.52589 1.53343 1.68946 3.04059 3.11898 3.14841 3.27525 3.72696 3.92499 4.08183 4.53472 4.69428 4.92629 4.97246 5.11762 5.16126 5.21721 5.35619 5.41315 5.45774 5.50760 5.58072 5.58739 5.69937 5.74541 5.83629 5.87805 5.92320 6.02879 6.07048 6.08907 6.09820 6.12426 6.20370 6.22928 6.24255 6.47154 6.50836 6.54046 6.60510 6.64494 6.70578 6.83344 6.95369 7.04533 7.08787 7.10017 7.27710 7.45482 7.55128 7.60771 7.67037 8.12886 8.48004 8.73043 9.22461 9.51828 10.31116 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009568 B = 0.005365 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.848677 B = 5217.537437 C = 7695.840145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.083 3.917 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.364 3.636 11 C 0.122 3.878 12 N -0.511 5.511 13 C 0.057 3.943 14 C -0.140 4.140 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.066 3.934 20 N -0.536 5.536 21 C 0.169 3.831 22 C -0.131 4.131 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.039 4.039 26 C -0.211 4.211 27 C 0.521 3.479 28 O -0.508 6.508 29 H 0.280 0.720 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.112 0.888 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -11.329 5.584 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.134 4.134 3 Si 0.751 3.249 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.124 0.876 9 N -0.055 5.055 10 C 0.101 3.899 11 C -0.007 4.007 12 N -0.236 5.236 13 C -0.071 4.071 14 C -0.177 4.177 15 C -0.145 4.145 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.062 4.062 20 N -0.264 5.264 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.197 4.197 25 C -0.058 4.058 26 C -0.219 4.219 27 C 0.315 3.685 28 O -0.382 6.382 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.130 0.870 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.143 0.857 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.892 -11.546 5.199 12.989 hybrid contribution -0.105 2.208 0.074 2.212 sum 2.787 -9.338 5.273 11.080 Atomic orbital electron populations 1.69810 1.07265 1.29512 1.36252 1.25381 0.94891 1.00459 0.92687 0.85975 0.79506 0.80331 0.79128 1.19452 1.20562 1.18937 1.19542 0.98186 0.84784 1.48825 0.87594 1.42254 1.36115 1.08233 1.18927 1.22720 0.92904 0.82772 0.91533 1.20827 0.98119 0.90231 0.91572 1.61815 1.04389 1.28899 1.28499 1.22133 0.96130 0.96492 0.92334 1.22171 1.03236 0.94839 0.97436 1.21565 0.98964 0.96452 0.97526 1.21673 0.93895 1.00621 0.99519 1.21709 0.96300 0.98071 0.99550 1.21896 0.96692 0.92509 1.04374 1.22174 0.89273 0.98554 0.96170 1.68499 1.17431 1.22868 1.17555 1.18866 0.92980 0.92324 0.90616 1.20602 1.00045 0.96324 0.98135 1.20966 0.97453 0.97749 0.94824 1.20816 1.04273 0.92888 1.01691 1.20875 0.93126 0.97483 0.94320 1.20847 1.05640 0.94482 1.00906 1.18225 0.81585 0.88247 0.80408 1.90660 1.60412 1.32736 1.54406 0.90983 0.89021 0.91510 0.91064 0.95481 0.89393 0.92506 0.93437 0.92471 0.94012 0.88659 0.92585 0.93689 0.93963 0.87000 0.93646 0.92982 0.85734 0.86625 0.86761 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.02 11.80 55.50 0.66 -21.37 16 2 C 0.08 2.12 4.28 -17.49 -0.07 2.05 16 3 Si 0.93 19.70 29.60 -169.99 -5.03 14.67 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.39 -9.65 8.07 -14.89 -0.12 -9.77 16 8 H 0.11 2.41 7.29 -52.48 -0.38 2.02 16 9 N -0.35 -8.75 2.67 -59.56 -0.16 -8.91 16 10 C 0.36 7.77 6.82 -154.87 -1.06 6.71 16 11 C 0.12 2.14 3.81 -4.97 -0.02 2.12 16 12 N -0.51 -7.64 2.59 -236.05 -0.61 -8.25 16 13 C 0.06 0.71 5.20 -3.96 -0.02 0.69 16 14 C -0.14 -1.52 5.32 -26.69 -0.14 -1.66 16 15 C -0.11 -1.16 5.77 -26.56 -0.15 -1.32 16 16 C -0.12 -1.47 5.50 -26.74 -0.15 -1.61 16 17 C -0.12 -1.45 5.46 -26.88 -0.15 -1.60 16 18 C -0.12 -1.69 5.33 -26.71 -0.14 -1.83 16 19 C 0.07 0.99 4.40 -3.67 -0.02 0.98 16 20 N -0.54 -10.89 5.95 -8.10 -0.05 -10.94 16 21 C 0.17 3.53 6.63 -84.49 -0.56 2.97 16 22 C -0.13 -2.30 9.85 -39.25 -0.39 -2.68 16 23 C -0.09 -1.42 10.00 -39.54 -0.40 -1.82 16 24 C -0.18 -2.99 10.02 -39.51 -0.40 -3.39 16 25 C -0.04 -0.79 9.68 -39.32 -0.38 -1.17 16 26 C -0.21 -4.91 5.89 -104.77 -0.62 -5.52 16 27 C 0.52 13.85 6.95 -12.47 -0.09 13.76 16 28 O -0.51 -14.89 14.45 5.17 0.07 -14.82 16 29 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 1.51 7.82 -51.93 -0.41 1.11 16 31 H 0.07 1.22 7.81 -51.93 -0.41 0.82 16 32 H 0.07 0.85 7.82 -51.93 -0.41 0.45 16 33 H 0.03 0.33 8.05 -51.93 -0.42 -0.09 16 34 H 0.09 1.01 2.86 -51.93 -0.15 0.86 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.40 6.33 -51.93 -0.33 1.07 16 40 H 0.06 0.65 5.42 -51.93 -0.28 0.37 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.11 1.84 4.62 -51.93 -0.24 1.60 16 44 H 0.05 0.62 5.46 -51.93 -0.28 0.33 16 45 H 0.05 0.94 7.03 -51.93 -0.37 0.57 16 46 H 0.12 1.93 7.46 -52.49 -0.39 1.54 16 47 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 48 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 49 H 0.12 2.49 7.83 -52.48 -0.41 2.08 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -29.09 366.11 -11.43 -40.52 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.97 Total: 6.68 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -4.86 Total: -3.10 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.16 Total: -49.47 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.07 Total: -14.82 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.09 -11.43 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014219966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.967 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds