Wall clock time and date at job start Wed Apr 1 2020 00:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47384 * 302.34698 * 3 2 1 5 5 N 1.46491 * 109.46959 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00111 * 270.00005 * 5 4 3 7 7 C 1.50702 * 109.47383 * 270.00036 * 6 5 4 8 8 H 1.07995 * 119.99629 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99874 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00287 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99512 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46975 * 90.00323 * 11 9 7 13 13 H 1.48499 * 109.46922 * 209.99872 * 11 9 7 14 14 H 1.48496 * 109.47466 * 330.00002 * 11 9 7 15 15 C 1.34781 * 120.00109 * 90.00145 * 5 4 3 16 16 O 1.21279 * 120.00067 * 179.97438 * 15 5 4 17 17 C 1.50695 * 119.99779 * 0.02562 * 15 5 4 18 18 N 1.46907 * 109.47099 * 184.45808 * 17 15 5 19 19 C 1.46888 * 111.00048 * 283.97868 * 18 17 15 20 20 C 1.50704 * 109.47135 * 169.99831 * 19 18 17 21 21 C 1.38234 * 119.99756 * 90.00279 * 20 19 18 22 22 C 1.38234 * 119.99980 * 180.02562 * 21 20 19 23 23 C 1.38242 * 120.00104 * 359.95501 * 22 21 20 24 24 C 1.38239 * 119.99601 * 0.27641 * 23 22 21 25 25 C 1.38232 * 119.99911 * 359.53715 * 24 23 22 26 26 C 1.46900 * 110.99913 * 160.02358 * 18 17 15 27 27 C 1.53007 * 117.49879 * 12.10019 * 26 18 17 28 28 C 1.53002 * 117.50287 * 303.44151 * 26 18 17 29 29 H 1.09004 * 109.46272 * 182.34628 * 3 2 1 30 30 H 1.09004 * 109.47068 * 62.35456 * 3 2 1 31 31 H 1.09004 * 109.46671 * 60.00210 * 4 3 2 32 32 H 1.09001 * 109.47181 * 300.00224 * 4 3 2 33 33 H 1.09000 * 109.47226 * 30.00350 * 6 5 4 34 34 H 1.09002 * 109.46820 * 150.00442 * 6 5 4 35 35 H 0.97002 * 120.00155 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.47425 * 64.45785 * 17 15 5 37 37 H 1.09004 * 109.47248 * 304.45648 * 17 15 5 38 38 H 1.09006 * 109.46999 * 50.00268 * 19 18 17 39 39 H 1.09000 * 109.47706 * 290.00287 * 19 18 17 40 40 H 1.08003 * 120.00382 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.00228 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.00129 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00125 * 179.72683 * 24 23 22 44 44 H 1.08010 * 119.99882 * 180.21237 * 25 24 23 45 45 H 1.08994 * 115.55167 * 157.76925 * 26 18 17 46 46 H 1.08993 * 117.49543 * 359.97438 * 27 26 18 47 47 H 1.08999 * 117.49601 * 145.01561 * 27 26 18 48 48 H 1.08996 * 117.49964 * 214.98168 * 28 26 18 49 49 H 1.09005 * 117.49503 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1185 -0.7709 1.2186 5 7 4.5834 -0.7697 1.2189 6 6 5.3169 -1.8408 0.5400 7 6 5.5689 -2.9685 1.5074 8 1 5.2174 -2.8949 2.5259 9 6 6.2473 -4.0946 1.0919 10 7 6.6749 -4.1845 -0.1485 11 14 6.5590 -5.4927 2.2909 12 1 5.4294 -6.4550 2.2336 13 1 7.8196 -6.1869 1.9249 14 1 6.6756 -4.9477 3.6673 15 6 5.2564 0.2169 1.8437 16 8 6.4692 0.2177 1.8443 17 6 4.5018 1.3183 2.5425 18 7 5.4519 2.3183 3.0481 19 6 6.1344 1.8331 4.2549 20 6 7.2654 2.7666 4.6020 21 6 7.0412 3.8416 5.4416 22 6 8.0784 4.6983 5.7597 23 6 9.3401 4.4794 5.2389 24 6 9.5632 3.4070 4.3955 25 6 8.5268 2.5482 4.0805 26 6 4.7812 3.6004 3.3021 27 6 3.2512 3.6120 3.2899 28 6 4.0311 4.2485 2.1367 29 1 2.9708 1.0277 0.0421 30 1 2.9716 -0.4760 -0.9104 31 1 2.7556 -1.7979 1.1765 32 1 2.7549 -0.2941 2.1289 33 1 4.7284 -2.2080 -0.3007 34 1 6.2691 -1.4549 0.1759 35 1 7.1518 -4.9769 -0.4410 36 1 3.9370 0.9000 3.3756 37 1 3.8160 1.7915 1.8397 38 1 6.5310 0.8344 4.0712 39 1 5.4265 1.7962 5.0828 40 1 6.0557 4.0123 5.8491 41 1 7.9032 5.5384 6.4153 42 1 10.1504 5.1489 5.4871 43 1 10.5478 3.2385 3.9850 44 1 8.7019 1.7084 3.4243 45 1 5.2838 4.2622 4.0073 46 1 2.7424 2.6684 3.0929 47 1 2.7475 4.2817 3.9868 48 1 4.0401 5.3367 2.0754 49 1 4.0356 3.7238 1.1813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054984930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:06 Heat of formation + Delta-G solvation = 43.598366 kcal Electronic energy + Delta-G solvation = -29748.119746 eV Core-core repulsion = 25868.931063 eV Total energy + Delta-G solvation = -3879.188683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.22465 -40.13140 -38.97497 -37.95162 -36.64082 -35.03126 -34.83446 -32.42174 -32.10447 -31.72162 -29.84246 -28.02214 -26.04024 -25.29293 -24.45883 -23.45599 -23.12301 -22.28881 -21.08284 -19.74610 -18.82787 -18.36116 -18.29269 -17.60490 -17.26490 -16.81642 -16.49728 -16.26990 -15.94066 -15.81107 -15.64653 -15.48782 -14.78516 -14.71875 -14.53745 -14.25947 -14.18390 -13.92312 -13.69345 -13.55324 -13.52300 -13.31426 -13.28290 -12.97028 -12.92040 -12.72557 -12.59316 -12.49725 -12.26605 -12.16955 -11.92578 -11.83543 -11.75023 -11.67348 -11.64835 -11.13742 -10.57501 -10.43541 -9.73779 -9.62549 -9.42390 -8.99617 -8.16805 -6.28973 0.47468 0.56978 1.38947 1.41502 1.50461 1.69271 1.83948 1.95714 2.20515 2.43539 2.71677 3.03504 3.07261 3.15071 3.32481 3.71799 3.86155 3.97352 4.03502 4.04178 4.09335 4.13525 4.21096 4.21777 4.24553 4.33626 4.34823 4.48762 4.56772 4.66916 4.77178 4.83555 4.85095 4.86846 4.97352 5.04777 5.12962 5.14927 5.18868 5.23464 5.31959 5.36402 5.60746 5.63347 5.68511 5.81592 5.88299 5.98283 6.15043 6.17377 6.20659 6.60416 6.78657 6.85365 7.36971 7.60385 8.89723 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007915 B = 0.003926 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.632449 B = 7129.402754 C =10020.961412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.263 3.737 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.502 3.498 16 O -0.567 6.567 17 C 0.041 3.959 18 N -0.499 5.499 19 C 0.101 3.899 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.118 4.118 26 C 0.006 3.994 27 C -0.208 4.208 28 C -0.173 4.173 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.002 0.998 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.130 0.870 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 19.794 9.936 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.080 4.080 4 C -0.011 4.011 5 N -0.332 5.332 6 C 0.142 3.858 7 C -0.577 4.577 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.290 3.710 16 O -0.444 6.444 17 C -0.090 4.090 18 N -0.221 5.221 19 C -0.026 4.026 20 C -0.081 4.081 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.150 4.150 25 C -0.137 4.137 26 C -0.103 4.103 27 C -0.247 4.247 28 C -0.211 4.211 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.114 0.886 45 H 0.147 0.853 46 H 0.120 0.880 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.039 19.714 9.443 22.432 hybrid contribution 0.510 -1.632 0.487 1.778 sum -4.529 18.082 9.929 21.120 Atomic orbital electron populations 1.81256 1.14269 1.10684 1.10187 1.29097 0.94868 0.91481 0.91739 1.19834 0.80237 1.05451 1.02467 1.21500 0.79275 1.02404 0.97916 1.48084 1.06587 1.24687 1.53884 1.18747 0.91361 0.83840 0.91863 1.21744 1.36210 1.02062 0.97649 0.92916 1.25694 0.95267 1.00947 0.96765 1.70025 1.39181 1.29803 1.17568 0.85597 0.77852 0.79345 0.79109 1.19198 1.21089 1.19947 1.21107 0.87988 0.82860 0.79089 1.90660 1.16210 1.77042 1.60534 1.22193 0.94233 0.91936 1.00603 1.61329 1.28146 1.02167 1.30452 1.20982 0.93992 0.96993 0.90651 1.19734 0.94051 0.96746 0.97544 1.21254 1.00202 0.94216 0.97990 1.21447 0.92610 0.99862 1.00104 1.21450 0.98224 0.97485 0.97134 1.21359 0.99071 0.95621 0.98990 1.21145 0.93837 0.99611 0.99113 1.22874 0.91774 0.92755 1.02867 1.23687 0.94589 1.03817 1.02622 1.23167 1.03101 1.00968 0.93865 0.84945 0.86197 0.89720 0.87860 0.94953 0.98001 0.92636 0.89816 0.85397 0.92255 0.92466 0.84268 0.83283 0.83801 0.85417 0.88552 0.85269 0.87982 0.87221 0.87216 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.18 18.54 20.01 0.37 -12.80 16 2 C 0.25 5.24 15.43 89.44 1.38 6.62 16 3 C -0.04 -0.71 5.98 28.79 0.17 -0.53 16 4 C 0.11 2.76 5.10 86.38 0.44 3.20 16 5 N -0.60 -21.50 2.46 -826.16 -2.03 -23.53 16 6 C 0.26 12.73 5.16 85.63 0.44 13.18 16 7 C -0.54 -29.05 9.39 25.60 0.24 -28.81 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.69 5.46 84.65 0.46 1.15 16 10 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 11 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.50 18.27 7.41 87.65 0.65 18.92 16 16 O -0.57 -26.96 14.62 -3.03 -0.04 -27.01 16 17 C 0.04 1.00 2.60 85.55 0.22 1.22 16 18 N -0.50 -13.01 4.31 -880.06 -3.79 -16.79 16 19 C 0.10 2.79 4.72 85.56 0.40 3.20 16 20 C -0.08 -2.12 5.01 -19.87 -0.10 -2.22 16 21 C -0.12 -2.35 7.98 22.27 0.18 -2.17 16 22 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 23 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 24 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 25 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16 26 C 0.01 0.11 5.82 44.92 0.26 0.37 16 27 C -0.21 -2.90 9.57 30.62 0.29 -2.61 16 28 C -0.17 -2.77 9.90 30.62 0.30 -2.47 16 29 H 0.13 1.77 7.14 -2.39 -0.02 1.75 16 30 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 32 H 0.10 1.88 6.56 -2.39 -0.02 1.87 16 33 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 35 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.08 1.76 7.30 -2.39 -0.02 1.74 16 37 H 0.13 2.35 4.32 -2.38 -0.01 2.34 16 38 H 0.06 2.12 6.54 -2.38 -0.02 2.10 16 39 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 40 H 0.14 2.07 7.47 -2.91 -0.02 2.04 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.10 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.13 2.32 5.28 -2.39 -0.01 2.31 16 46 H 0.10 1.35 6.07 -2.39 -0.01 1.33 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.09 1.58 7.39 -2.38 -0.02 1.56 16 Total: -1.00 -74.84 405.94 4.01 -70.82 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.96 Total: 18.44 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 6.24 Total: -1.30 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.16 Total: -106.79 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.04 Total: -27.01 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.84 4.01 -70.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054984930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.423 kcal (2) G-P(sol) polarization free energy of solvation -74.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds