Wall clock time and date at job start Wed Apr 1 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47213 * 69.60460 * 3 2 1 5 5 N 1.46903 * 109.46938 * 174.95244 * 4 3 2 6 6 C 1.46902 * 110.99888 * 200.56255 * 5 4 3 7 7 C 1.50700 * 109.46803 * 66.04614 * 6 5 4 8 8 H 1.08001 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00022 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00308 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46880 * 90.00328 * 11 9 7 13 13 H 1.48498 * 109.47179 * 210.00249 * 11 9 7 14 14 H 1.48497 * 109.47157 * 330.00428 * 11 9 7 15 15 C 1.46896 * 111.00366 * 76.61079 * 5 4 3 16 16 C 1.50702 * 109.47378 * 199.93029 * 15 5 4 17 17 O 1.21281 * 119.99971 * 0.94558 * 16 15 5 18 18 N 1.34779 * 119.99865 * 180.67654 * 16 15 5 19 19 C 1.46501 * 119.99603 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46813 * 184.85855 * 19 18 16 21 21 C 1.50703 * 115.54680 * 279.52027 * 20 19 18 22 22 C 1.38241 * 119.99635 * 113.48827 * 21 20 19 23 23 C 1.38235 * 119.99924 * 179.74589 * 22 21 20 24 24 C 1.38244 * 119.99633 * 0.52750 * 23 22 21 25 25 C 1.38234 * 120.00222 * 359.74844 * 24 23 22 26 26 C 1.38230 * 120.00495 * 293.76218 * 21 20 19 27 27 C 1.52995 * 117.50100 * 133.81716 * 20 19 18 28 28 C 1.52996 * 60.00046 * 252.50389 * 27 20 19 29 29 H 1.09002 * 109.47497 * 309.59780 * 3 2 1 30 30 H 1.09006 * 109.46941 * 189.60307 * 3 2 1 31 31 H 1.08992 * 109.47335 * 54.95455 * 4 3 2 32 32 H 1.08993 * 109.46859 * 294.94805 * 4 3 2 33 33 H 1.08998 * 109.47224 * 186.04067 * 6 5 4 34 34 H 1.08997 * 109.47130 * 306.04875 * 6 5 4 35 35 H 0.96998 * 120.00485 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47129 * 79.92366 * 15 5 4 37 37 H 1.09005 * 109.47100 * 319.92813 * 15 5 4 38 38 H 0.96998 * 120.00524 * 359.97438 * 18 16 15 39 39 H 1.09005 * 109.47019 * 304.85244 * 19 18 16 40 40 H 1.08992 * 109.47612 * 64.85453 * 19 18 16 41 41 H 1.08001 * 120.00131 * 0.02562 * 22 21 20 42 42 H 1.07994 * 120.00439 * 180.29810 * 23 22 21 43 43 H 1.08000 * 119.99822 * 179.76919 * 24 23 22 44 44 H 1.07992 * 119.99940 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00025 * 0.02562 * 26 21 20 46 46 H 1.08997 * 117.50127 * 359.97438 * 27 20 19 47 47 H 1.09006 * 117.49761 * 145.01988 * 27 20 19 48 48 H 1.08999 * 117.50138 * 252.50752 * 28 27 20 49 49 H 1.09002 * 117.51333 * 107.47765 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.5018 -1.3521 5 7 4.5821 -0.3875 -1.3961 6 6 5.0684 -0.3844 -2.7823 7 6 4.5902 0.8631 -3.4795 8 1 3.9859 1.5820 -2.9461 9 6 4.9250 1.0874 -4.7981 10 7 5.6613 0.2123 -5.4475 11 14 4.3317 2.6334 -5.6626 12 1 5.3325 3.7158 -5.4832 13 1 4.1579 2.3550 -7.1108 14 1 3.0332 3.0584 -5.0809 15 6 5.2175 -1.4592 -0.6179 16 6 6.6288 -1.0596 -0.2717 17 8 7.0569 0.0195 -0.6226 18 7 7.4134 -1.8993 0.4325 19 6 8.7851 -1.5106 0.7694 20 6 9.4916 -2.6795 1.4590 21 6 9.1850 -2.8509 2.9245 22 6 8.4932 -3.9657 3.3601 23 6 8.2166 -4.1256 4.7050 24 6 8.6223 -3.1653 5.6130 25 6 9.3091 -2.0478 5.1767 26 6 9.5906 -1.8908 3.8325 27 6 10.9042 -3.0290 0.9867 28 6 9.7311 -3.9459 0.6345 29 1 2.9716 -0.6542 0.7918 30 1 2.9708 1.0142 0.1714 31 1 2.6827 0.0986 -2.1507 32 1 2.8311 -1.5450 -1.4838 33 1 6.1581 -0.4071 -2.7852 34 1 4.6852 -1.2615 -3.3038 35 1 5.8966 0.3699 -6.3753 36 1 5.2336 -2.3759 -1.2074 37 1 4.6521 -1.6267 0.2989 38 1 7.0696 -2.7606 0.7169 39 1 9.3225 -1.2478 -0.1418 40 1 8.7651 -0.6516 1.4400 41 1 8.1728 -4.7139 2.6502 42 1 7.6804 -4.9988 5.0460 43 1 8.4029 -3.2884 6.6633 44 1 9.6256 -1.2975 5.8860 45 1 10.1268 -1.0175 3.4916 46 1 11.3302 -2.4266 0.1844 47 1 11.6122 -3.3831 1.7361 48 1 9.6673 -4.9030 1.1521 49 1 9.3851 -3.9464 -0.3991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132866289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:57 Heat of formation + Delta-G solvation = 47.474434 kcal Electronic energy + Delta-G solvation = -28721.625484 eV Core-core repulsion = 24842.604880 eV Total energy + Delta-G solvation = -3879.020604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26013 -39.14983 -37.57771 -36.97571 -35.84966 -33.74136 -32.63753 -31.19568 -31.00918 -30.85024 -28.77307 -26.87049 -25.22610 -23.38016 -23.28933 -22.99305 -22.05484 -20.79874 -19.96521 -19.49207 -17.40500 -17.27886 -16.77825 -16.36475 -16.02709 -15.54561 -15.20703 -15.01045 -14.91117 -14.62705 -14.45136 -14.28865 -14.03930 -13.68189 -13.51160 -13.40373 -13.01092 -12.92194 -12.67367 -12.37656 -12.26042 -12.06775 -11.99528 -11.76538 -11.73871 -11.44919 -11.35505 -11.22205 -11.01244 -10.72825 -10.69414 -10.56747 -10.38425 -10.27993 -9.87426 -9.36362 -9.17187 -9.09825 -8.90521 -8.76532 -8.38998 -7.39497 -5.98600 -3.98395 1.08302 1.15263 2.96261 3.01454 3.11785 3.19401 3.36916 3.42651 3.45724 3.50381 3.72529 4.20353 4.24998 4.41589 4.47946 4.59360 4.72980 4.78603 4.82956 4.88492 5.02974 5.20036 5.25776 5.31325 5.33545 5.38650 5.40051 5.51250 5.53353 5.59634 5.61130 5.65767 5.72841 5.76896 5.83567 5.85168 5.87340 5.91446 6.23827 6.24090 6.26763 6.35900 6.52087 6.68198 6.74191 7.19042 7.24930 7.73194 7.79170 7.85678 8.07251 8.13899 8.49590 8.76986 9.07254 9.64753 11.12667 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010384 B = 0.002718 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.786702 B =10298.663296 C =12214.515900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.219 3.781 3 C -0.028 4.028 4 C 0.065 3.935 5 N -0.516 5.516 6 C 0.197 3.803 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.034 3.966 16 C 0.510 3.490 17 O -0.499 6.499 18 N -0.739 5.739 19 C 0.166 3.834 20 C -0.109 4.109 21 C -0.042 4.042 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.108 4.108 27 C -0.153 4.153 28 C -0.165 4.165 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.043 0.957 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.812 -11.794 20.483 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.098 4.098 3 C -0.068 4.068 4 C -0.065 4.065 5 N -0.241 5.241 6 C 0.073 3.927 7 C -0.541 4.541 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.098 4.098 16 C 0.296 3.704 17 O -0.371 6.371 18 N -0.394 5.394 19 C 0.042 3.958 20 C -0.109 4.109 21 C -0.042 4.042 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.191 4.191 28 C -0.202 4.202 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.228 0.772 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.635 -10.532 20.222 24.380 hybrid contribution -0.084 -0.429 -0.692 0.818 sum 8.551 -10.961 19.530 23.973 Atomic orbital electron populations 1.81163 1.13259 1.09720 1.09230 1.29352 0.95412 0.92478 0.92591 1.19432 0.80490 1.05898 1.00997 1.21925 0.89640 0.99489 0.95414 1.61762 1.03006 1.42012 1.17288 1.19800 0.96803 0.96296 0.79833 1.21099 1.32178 1.05473 0.95366 0.91771 1.24947 0.95345 0.96716 0.97494 1.69950 1.37753 1.35412 1.10746 0.86535 0.79162 0.83444 0.78491 1.20614 1.21447 1.19870 1.21954 0.92964 0.95200 0.99676 1.20751 0.87622 0.84575 0.77484 1.90767 1.74174 1.21719 1.50440 1.45973 1.13528 1.21320 1.58593 1.20665 0.82266 0.94035 0.98811 1.20374 1.00619 0.98363 0.91556 1.18996 0.97938 0.94789 0.92487 1.21043 0.98705 0.97643 0.95766 1.21130 1.00152 0.99207 0.93270 1.21160 0.98895 0.94608 0.99613 1.21145 0.98919 0.97883 0.95716 1.21006 0.99836 0.98853 0.92874 1.23074 0.90056 1.02848 1.03077 1.23078 1.02358 0.93801 1.00943 0.88405 0.86404 0.88191 0.94957 0.93930 0.99281 0.93021 0.92530 0.89284 0.77183 0.90954 0.91419 0.85968 0.86132 0.86278 0.86087 0.85935 0.87943 0.88434 0.88398 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.73 18.54 42.15 0.78 -6.95 16 2 C 0.22 3.17 15.43 -20.76 -0.32 2.85 16 3 C -0.03 -0.35 5.76 -29.52 -0.17 -0.52 16 4 C 0.07 1.07 4.74 -3.82 -0.02 1.05 16 5 N -0.52 -9.95 3.97 -237.52 -0.94 -10.90 16 6 C 0.20 4.91 4.34 -4.97 -0.02 4.89 16 7 C -0.50 -13.83 8.22 -34.44 -0.28 -14.12 16 8 H 0.06 1.74 7.33 -52.49 -0.38 1.35 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 11 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.03 0.51 5.29 -4.98 -0.03 0.48 16 16 C 0.51 8.38 7.48 -10.98 -0.08 8.30 16 17 O -0.50 -10.87 15.29 5.56 0.08 -10.79 16 18 N -0.74 -8.88 5.51 -60.29 -0.33 -9.22 16 19 C 0.17 1.90 5.55 -4.04 -0.02 1.88 16 20 C -0.11 -0.93 1.69 -155.66 -0.26 -1.20 16 21 C -0.04 -0.36 5.12 -104.62 -0.54 -0.90 16 22 C -0.11 -0.89 9.22 -39.58 -0.37 -1.26 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.11 -0.94 9.49 -39.59 -0.38 -1.31 16 27 C -0.15 -1.18 9.88 -26.74 -0.26 -1.44 16 28 C -0.16 -1.25 9.40 -26.74 -0.25 -1.50 16 29 H 0.10 0.94 6.94 -51.93 -0.36 0.58 16 30 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.10 1.92 6.57 -51.93 -0.34 1.58 16 32 H 0.03 0.49 7.99 -51.93 -0.41 0.07 16 33 H 0.04 1.20 6.76 -51.93 -0.35 0.85 16 34 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 37 H 0.09 0.99 6.61 -51.93 -0.34 0.65 16 38 H 0.39 3.68 8.48 -40.82 -0.35 3.33 16 39 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 40 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.12 0.79 7.08 -52.49 -0.37 0.42 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.64 7.19 -51.93 -0.37 0.26 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -34.64 414.62 -10.19 -44.83 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.46 Total: 1.08 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -4.29 Total: -5.25 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.24 Total: -52.98 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.64 -10.19 -44.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132866289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.309 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds