Wall clock time and date at job start Wed Apr 1 2020 00:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99537 * 2 1 4 4 H 1.48502 * 109.47365 * 270.00407 * 3 2 1 5 5 H 1.48502 * 109.47215 * 29.99988 * 3 2 1 6 6 H 1.48501 * 109.47208 * 150.00288 * 3 2 1 7 7 C 1.37873 * 120.00782 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99666 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.35037 * 125.93278 * 125.29143 * 10 9 7 12 12 C 1.35087 * 107.97944 * 180.15990 * 11 10 9 13 13 C 1.50704 * 126.07357 * 179.83674 * 12 11 10 14 14 N 1.46900 * 109.47093 * 96.30251 * 13 12 11 15 15 C 1.46842 * 111.00013 * 295.37254 * 14 13 12 16 16 C 1.53039 * 109.51363 * 185.84532 * 15 14 13 17 17 C 1.53129 * 109.27836 * 300.80492 * 16 15 14 18 18 C 1.53116 * 109.14942 * 57.66970 * 17 16 15 19 19 H 1.08996 * 109.54119 * 62.29955 * 18 17 16 20 20 O 1.42906 * 109.50107 * 182.40041 * 18 17 16 21 21 C 1.46849 * 110.99818 * 59.58370 * 14 13 12 22 22 C 1.40846 * 107.84900 * 359.57369 * 12 11 10 23 23 C 1.48416 * 126.03494 * 180.22943 * 22 12 11 24 24 C 1.39321 * 120.11951 * 316.69887 * 23 22 12 25 25 C 1.38031 * 119.87948 * 179.74943 * 24 23 22 26 26 C 1.38315 * 120.11432 * 0.55494 * 25 24 23 27 27 C 1.38316 * 120.24474 * 359.69987 * 26 25 24 28 28 C 1.38018 * 120.12111 * 0.02562 * 27 26 25 29 29 N 1.31621 * 107.92178 * 0.26473 * 22 12 11 30 30 H 0.96999 * 120.00424 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46570 * 60.00343 * 9 7 2 32 32 H 1.09000 * 109.47097 * 300.00609 * 9 7 2 33 33 H 1.07998 * 126.00662 * 359.97438 * 11 10 9 34 34 H 1.09004 * 109.46720 * 336.30544 * 13 12 11 35 35 H 1.08998 * 109.46721 * 216.30613 * 13 12 11 36 36 H 1.09000 * 109.46390 * 305.85319 * 15 14 13 37 37 H 1.09000 * 109.46372 * 65.83772 * 15 14 13 38 38 H 1.09002 * 109.50650 * 60.75322 * 16 15 14 39 39 H 1.08994 * 109.50587 * 180.87960 * 16 15 14 40 40 H 1.09003 * 109.52959 * 297.76660 * 17 16 15 41 41 H 1.08996 * 109.52437 * 177.56841 * 17 16 15 42 42 H 0.96691 * 113.99817 * 299.79893 * 20 18 17 43 43 H 1.09004 * 109.45975 * 294.17406 * 21 14 13 44 44 H 1.09003 * 109.46282 * 54.14224 * 21 14 13 45 45 H 1.08001 * 120.06591 * 0.02562 * 24 23 22 46 46 H 1.07993 * 119.94029 * 180.27356 * 25 24 23 47 47 H 1.08011 * 119.87624 * 179.72077 * 26 25 24 48 48 H 1.08000 * 119.94056 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.06587 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 6 2.2382 -4.6253 0.8919 12 6 3.2585 -5.4438 0.5541 13 6 3.6654 -6.7006 1.2794 14 7 3.0579 -7.8646 0.6207 15 6 1.5938 -7.8242 0.7258 16 6 1.0048 -9.1183 0.1597 17 6 1.4259 -9.2672 -1.3050 18 6 2.9546 -9.2578 -1.3915 19 1 3.3560 -10.1098 -0.8429 20 8 3.3554 -9.3402 -2.7607 21 6 3.4873 -7.9598 -0.7804 22 6 3.8705 -4.9171 -0.5999 23 6 5.0312 -5.5016 -1.3167 24 6 6.1201 -5.9933 -0.6000 25 6 7.1947 -6.5406 -1.2715 26 6 7.1968 -6.5909 -2.6537 27 6 6.1207 -6.0993 -3.3704 28 6 5.0385 -5.5551 -2.7089 29 7 3.2316 -3.8146 -0.9299 30 1 -0.4851 0.8400 0.0004 31 1 0.6243 -2.5567 -0.8904 32 1 0.6248 -2.5571 0.8896 33 1 1.5700 -4.7562 1.7302 34 1 3.3248 -6.6496 2.3136 35 1 4.7509 -6.7967 1.2587 36 1 1.3075 -7.7223 1.7726 37 1 1.2124 -6.9738 0.1605 38 1 1.3751 -9.9681 0.7332 39 1 -0.0827 -9.0815 0.2235 40 1 1.0230 -8.4376 -1.8861 41 1 1.0445 -10.2088 -1.6997 42 1 3.0518 -10.1396 -3.2119 43 1 3.0970 -7.1086 -1.3385 44 1 4.5763 -7.9563 -0.8276 45 1 6.1215 -5.9504 0.4792 46 1 8.0373 -6.9260 -0.7168 47 1 8.0417 -7.0159 -3.1754 48 1 6.1273 -6.1415 -4.4495 49 1 4.1986 -5.1720 -3.2693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158750985.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:36 Heat of formation + Delta-G solvation = 28.148735 kcal Electronic energy + Delta-G solvation = -30670.643496 eV Core-core repulsion = 26790.784867 eV Total energy + Delta-G solvation = -3879.858629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34771 -40.11672 -39.66861 -37.32869 -35.80679 -34.46877 -33.67016 -31.89712 -31.82206 -30.98223 -30.45553 -28.96615 -26.97906 -25.44058 -24.03065 -23.79169 -23.34537 -22.94007 -21.43881 -20.87502 -20.32937 -18.71793 -18.32440 -17.85840 -17.36775 -16.92227 -16.52465 -16.17839 -16.06956 -15.78212 -15.52906 -15.37958 -15.22618 -14.79807 -14.69963 -14.27459 -14.24484 -14.15451 -14.05736 -13.85498 -13.62211 -13.38598 -13.25952 -12.99703 -12.77645 -12.65255 -12.48224 -12.32839 -12.04574 -11.99620 -11.92128 -11.77014 -11.71913 -11.34011 -11.27976 -10.81100 -10.73309 -10.45397 -9.79801 -9.60262 -9.37525 -9.04538 -8.40614 -6.55220 0.24798 0.54461 1.14760 1.31828 1.33643 1.44641 1.80933 1.87747 2.28988 2.86169 2.91082 2.99627 3.59668 3.63474 3.82278 3.83934 3.93356 4.06108 4.09115 4.13787 4.25890 4.26739 4.33107 4.36476 4.51860 4.58994 4.60689 4.63256 4.68885 4.79644 4.81641 4.87094 4.89087 4.94421 5.02603 5.06308 5.09334 5.11361 5.15824 5.19346 5.21958 5.40821 5.49135 5.49680 5.64025 5.67873 5.75532 5.84928 6.10264 6.12588 6.14846 6.23558 6.56649 6.93847 6.95477 7.15284 8.67364 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003747 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.420360 B = 7471.031630 C = 8987.393651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.274 3.726 10 N -0.349 5.349 11 C 0.053 3.947 12 C -0.272 4.272 13 C 0.137 3.863 14 N -0.511 5.511 15 C 0.047 3.953 16 C -0.108 4.108 17 C -0.150 4.150 18 C 0.110 3.890 19 H 0.076 0.924 20 O -0.584 6.584 21 C 0.070 3.930 22 C 0.091 3.909 23 C -0.012 4.012 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.118 4.118 28 C -0.116 4.116 29 N -0.325 5.325 30 H 0.274 0.726 31 H 0.013 0.987 32 H 0.055 0.945 33 H 0.190 0.810 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.007 0.993 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.394 0.606 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.134 0.866 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.138 0.862 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.009 -22.802 0.640 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.067 0.933 9 C 0.155 3.845 10 N -0.129 5.129 11 C -0.095 4.095 12 C -0.285 4.285 13 C 0.008 3.992 14 N -0.235 5.235 15 C -0.081 4.081 16 C -0.145 4.145 17 C -0.188 4.188 18 C 0.051 3.949 19 H 0.094 0.906 20 O -0.391 6.391 21 C -0.059 4.059 22 C -0.074 4.074 23 C -0.014 4.014 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.136 4.136 28 C -0.136 4.136 29 N -0.148 5.148 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.026 0.974 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.243 0.757 43 H 0.030 0.970 44 H 0.094 0.906 45 H 0.151 0.849 46 H 0.175 0.825 47 H 0.172 0.828 48 H 0.156 0.844 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.036 -21.421 0.215 23.250 hybrid contribution -1.045 1.277 -0.388 1.695 sum 7.991 -20.143 -0.173 21.671 Atomic orbital electron populations 1.69987 1.07205 1.28873 1.49757 1.25731 0.95850 1.02716 0.93702 0.85361 0.78455 0.78138 0.78562 1.19993 1.19184 1.19689 1.21342 0.93176 0.91005 1.53101 0.93313 1.19244 0.85817 0.81900 0.97548 1.49105 1.24004 1.19844 1.19969 1.22839 1.00692 0.89271 0.96717 1.20890 1.01815 1.04192 1.01638 1.20683 1.00141 0.81611 0.96742 1.62373 1.08240 1.38932 1.13917 1.22194 0.87530 0.96845 1.01542 1.21510 1.00582 0.97748 0.94706 1.22296 0.96342 1.02178 0.97980 1.21741 0.93163 0.97699 0.82263 0.90642 1.86483 1.79492 1.48547 1.24615 1.21888 1.00305 0.95336 0.88339 1.21088 0.96797 0.93256 0.96220 1.17887 0.91860 0.99121 0.92554 1.21311 0.92684 0.98529 1.00391 1.21403 0.98157 0.98738 0.94792 1.21539 0.98462 0.98758 0.94438 1.21255 0.93305 0.98213 1.00832 1.21133 0.99014 0.99932 0.93494 1.77581 1.02580 1.18893 1.15756 0.91719 0.96881 0.92690 0.79275 0.88169 0.89035 0.89051 0.97412 0.89421 0.90414 0.94435 0.89380 0.75675 0.97018 0.90597 0.84858 0.82509 0.82819 0.84450 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 13.29 21.45 0.28 -52.94 16 2 C 0.02 1.17 5.46 84.65 0.46 1.63 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.03 9.23 25.60 0.24 -31.79 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.27 14.74 6.26 85.64 0.54 15.28 16 10 N -0.35 -16.83 3.67 -351.91 -1.29 -18.12 16 11 C 0.05 2.04 10.54 83.47 0.88 2.92 16 12 C -0.27 -9.40 4.00 -19.95 -0.08 -9.48 16 13 C 0.14 3.47 5.54 85.56 0.47 3.94 16 14 N -0.51 -12.42 4.86 -900.91 -4.38 -16.80 16 15 C 0.05 1.10 5.03 86.33 0.43 1.53 16 16 C -0.11 -2.00 6.09 30.65 0.19 -1.81 16 17 C -0.15 -3.05 5.63 30.68 0.17 -2.87 16 18 C 0.11 2.45 3.63 30.65 0.11 2.56 16 19 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 20 O -0.58 -13.31 13.32 -148.98 -1.98 -15.29 16 21 C 0.07 1.91 3.50 86.33 0.30 2.22 16 22 C 0.09 3.65 5.57 42.53 0.24 3.89 16 23 C -0.01 -0.42 3.41 -20.04 -0.07 -0.49 16 24 C -0.11 -2.94 7.47 22.48 0.17 -2.78 16 25 C -0.11 -2.36 10.03 22.24 0.22 -2.13 16 26 C -0.11 -2.35 10.04 22.31 0.22 -2.13 16 27 C -0.12 -3.05 10.03 22.24 0.22 -2.83 16 28 C -0.12 -3.92 9.70 22.48 0.22 -3.70 16 29 N -0.32 -16.07 12.44 -48.16 -0.60 -16.67 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 2.88 8.07 -2.39 -0.02 2.86 16 33 H 0.19 5.87 8.06 -2.91 -0.02 5.84 16 34 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16 35 H 0.09 2.15 5.41 -2.39 -0.01 2.14 16 36 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.01 0.23 6.91 -2.39 -0.02 0.21 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.39 5.02 9.08 -74.06 -0.67 4.35 16 43 H 0.01 0.42 5.81 -2.38 -0.01 0.40 16 44 H 0.08 2.15 6.19 -2.39 -0.01 2.14 16 45 H 0.13 3.23 6.32 -2.91 -0.02 3.21 16 46 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 47 H 0.15 2.08 8.06 -2.90 -0.02 2.06 16 48 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 49 H 0.09 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -73.07 388.83 -0.71 -73.79 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.29 Total: 25.20 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.94 Total: -26.03 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -5.98 Total: -104.52 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.98 Total: -15.29 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.07 -0.71 -73.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158750985.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.936 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds