Wall clock time and date at job start Wed Apr 1 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99838 * 2 1 4 4 H 1.48504 * 109.47374 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.47390 * 29.99647 * 3 2 1 6 6 H 1.48497 * 109.47119 * 149.99709 * 3 2 1 7 7 C 1.38789 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00494 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00108 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00062 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47269 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47550 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.46838 * 111.00001 * 169.99985 * 13 12 11 15 15 C 1.53034 * 109.52580 * 185.83690 * 14 13 12 16 16 C 1.53118 * 109.28189 * 300.82495 * 15 14 13 17 17 N 1.46893 * 109.52775 * 177.55517 * 16 15 14 18 18 C 1.49012 * 111.16628 * 57.80020 * 17 16 15 19 19 C 1.54936 * 103.26194 * 159.69258 * 18 17 16 20 20 C 1.54597 * 102.91936 * 322.54317 * 19 18 17 21 21 C 1.47900 * 111.00241 * 174.99801 * 17 16 15 22 22 H 1.09002 * 109.91739 * 333.51114 * 21 17 16 23 23 C 1.50702 * 109.91586 * 94.60764 * 21 17 16 24 24 N 1.34779 * 119.99837 * 179.60227 * 23 21 17 25 25 O 1.21278 * 120.00249 * 359.59609 * 23 21 17 26 26 C 1.53119 * 109.15936 * 57.64577 * 16 15 14 27 27 C 1.46853 * 110.99704 * 294.21159 * 13 12 11 28 28 H 0.96994 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46927 * 60.00184 * 10 9 7 30 30 H 1.09000 * 109.47429 * 300.00477 * 10 9 7 31 31 H 1.09002 * 109.47046 * 60.00196 * 11 10 9 32 32 H 1.09003 * 109.46863 * 300.00182 * 11 10 9 33 33 H 1.09002 * 109.46898 * 59.99967 * 12 11 10 34 34 H 1.08994 * 109.46780 * 300.00398 * 12 11 10 35 35 H 1.09010 * 109.46396 * 65.82377 * 14 13 12 36 36 H 1.08993 * 109.45735 * 305.85241 * 14 13 12 37 37 H 1.09000 * 109.50584 * 180.88016 * 15 14 13 38 38 H 1.08998 * 109.50169 * 60.76403 * 15 14 13 39 39 H 1.09004 * 109.52086 * 297.68226 * 16 15 14 40 40 H 1.09005 * 110.69031 * 41.22965 * 18 17 16 41 41 H 1.09000 * 110.75615 * 278.18558 * 18 17 16 42 42 H 1.08989 * 110.72581 * 204.18400 * 19 18 17 43 43 H 1.09005 * 110.87576 * 80.96887 * 19 18 17 44 44 H 1.09000 * 110.30898 * 263.03848 * 20 19 18 45 45 H 1.09005 * 110.38968 * 140.91622 * 20 19 18 46 46 H 0.97001 * 119.99840 * 359.97438 * 24 23 21 47 47 H 0.96998 * 119.99873 * 180.02562 * 24 23 21 48 48 H 1.09008 * 109.50235 * 62.29762 * 26 16 15 49 49 H 1.09001 * 109.50367 * 182.40571 * 26 16 15 50 50 H 1.08996 * 109.46156 * 294.17378 * 27 13 12 51 51 H 1.08997 * 109.46521 * 54.15866 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5958 -3.2362 0.0039 12 6 5.8616 -4.7430 0.0044 13 7 7.3105 -4.9847 0.0064 14 6 7.6071 -6.4028 0.2449 15 6 9.1192 -6.5926 0.3850 16 6 9.8095 -6.1160 -0.8959 17 7 11.2652 -6.2412 -0.7450 18 6 11.6555 -7.6462 -0.4382 19 6 13.1527 -7.6937 -0.8338 20 6 13.2047 -6.8044 -2.0974 21 6 11.9600 -5.9023 -2.0059 22 1 11.3021 -6.0902 -2.8544 23 6 12.3758 -4.4539 -1.9897 24 7 13.0353 -3.9303 -3.0420 25 8 12.1169 -3.7594 -1.0298 26 6 9.4453 -4.6502 -1.1475 27 6 7.9238 -4.5167 -1.2433 28 1 -0.4850 0.8400 -0.0004 29 1 3.6441 -3.4320 -0.8874 30 1 3.6433 -3.4309 0.8926 31 1 6.0380 -2.7887 0.8941 32 1 6.0395 -2.7896 -0.8860 33 1 5.4194 -5.1901 -0.8859 34 1 5.4178 -5.1898 0.8940 35 1 7.2429 -6.9962 -0.5938 36 1 7.1139 -6.7278 1.1609 37 1 9.3402 -7.6477 0.5465 38 1 9.4820 -6.0105 1.2321 39 1 9.4768 -6.7244 -1.7370 40 1 11.0763 -8.3469 -1.0397 41 1 11.5313 -7.8586 0.6236 42 1 13.4579 -8.7136 -1.0672 43 1 13.7768 -7.2772 -0.0431 44 1 13.1604 -7.4204 -2.9956 45 1 14.1114 -6.1992 -2.0988 46 1 13.2426 -4.4859 -3.8096 47 1 13.3032 -2.9981 -3.0314 48 1 9.8133 -4.0374 -0.3245 49 1 9.8992 -4.3174 -2.0809 50 1 7.5580 -5.1188 -2.0750 51 1 7.6607 -3.4719 -1.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159412989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:34 Heat of formation + Delta-G solvation = -41.213618 kcal Electronic energy + Delta-G solvation = -27898.965038 eV Core-core repulsion = 24151.542583 eV Total energy + Delta-G solvation = -3747.422455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80942 -39.05034 -37.85344 -34.96643 -33.88004 -32.43488 -32.37449 -31.16658 -29.76589 -29.48595 -25.91877 -25.40434 -23.83933 -23.51223 -22.38773 -21.45948 -20.55885 -20.17264 -19.84585 -17.91584 -17.44647 -17.08648 -16.76426 -15.70989 -15.53462 -15.35491 -14.93818 -14.83665 -14.72757 -14.31913 -14.22234 -13.98306 -13.81987 -13.75580 -13.34999 -12.90026 -12.80969 -12.60077 -12.38840 -12.21743 -11.97621 -11.81788 -11.56914 -11.46237 -11.38475 -11.25739 -11.12620 -11.01054 -10.99062 -10.72467 -10.52361 -10.19422 -10.03308 -10.02133 -9.91540 -9.71193 -8.96486 -8.77071 -8.50339 -8.28625 -6.88937 -6.24580 -3.96173 2.41748 2.95862 3.05348 3.33602 3.50385 3.59307 3.65939 3.93540 4.06925 4.12626 4.35907 4.36337 4.59938 4.67379 4.70202 4.73938 4.85981 4.94880 5.01795 5.09899 5.12788 5.14265 5.21650 5.22562 5.27254 5.34826 5.37818 5.42731 5.49672 5.53882 5.60286 5.63299 5.68544 5.72805 5.82347 5.84078 5.93250 6.08337 6.08996 6.30203 6.33869 6.38316 6.54242 6.56343 6.72197 6.75104 7.05186 7.12681 7.13733 7.99285 8.05979 8.47914 9.21600 10.84896 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.002004 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.476462 B =13971.475539 C =15038.272344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.090 3.910 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.081 4.081 11 C -0.097 4.097 12 C 0.061 3.939 13 N -0.535 5.535 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.081 3.919 17 N -0.487 5.487 18 C 0.035 3.965 19 C -0.123 4.123 20 C -0.123 4.123 21 C 0.045 3.955 22 H 0.076 0.924 23 C 0.521 3.479 24 N -0.863 5.863 25 O -0.507 6.507 26 C -0.100 4.100 27 C 0.053 3.947 28 H 0.270 0.730 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.397 0.603 47 H 0.402 0.598 48 H 0.093 0.907 49 H 0.053 0.947 50 H 0.026 0.974 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.005 -19.079 -6.989 36.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.648 4.648 8 H 0.105 0.895 9 S 0.012 5.988 10 C -0.230 4.230 11 C -0.136 4.136 12 C -0.068 4.068 13 N -0.259 5.259 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.028 4.028 17 N -0.211 5.211 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.067 4.067 22 H 0.094 0.906 23 C 0.304 3.696 24 N -0.429 5.429 25 O -0.380 6.380 26 C -0.139 4.139 27 C -0.075 4.075 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.225 0.775 47 H 0.233 0.767 48 H 0.112 0.888 49 H 0.072 0.928 50 H 0.045 0.955 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 30.619 -17.173 -5.438 35.525 hybrid contribution -1.266 -1.113 -1.950 2.578 sum 29.353 -18.287 -7.388 35.364 Atomic orbital electron populations 1.69943 1.05912 1.27651 1.48492 1.24801 0.94524 0.99030 0.93394 0.86664 0.81821 0.83172 0.79667 1.19436 1.20145 1.16079 1.22136 0.87198 0.97365 1.58149 0.89472 1.84184 1.11501 1.05558 1.97512 1.23014 0.97467 0.99044 1.03507 1.21347 0.94651 0.94321 1.03297 1.22139 0.86599 0.97318 1.00735 1.61901 1.11612 1.17404 1.35023 1.22041 0.95817 0.88528 1.00627 1.21625 0.94130 1.00605 0.98092 1.21913 0.86262 0.97425 0.97177 1.64580 1.07058 1.21095 1.28329 1.23332 0.95056 0.88818 1.01995 1.22479 0.96613 0.99620 0.97352 1.22411 0.96730 0.97622 0.99379 1.22319 0.97111 0.93124 0.94157 0.90615 1.20380 0.77383 0.89420 0.82438 1.43899 1.62123 1.15888 1.20950 1.90783 1.52706 1.61334 1.33135 1.21633 0.94273 0.95329 1.02620 1.22172 0.94309 1.01240 0.89797 0.92035 0.91738 0.91393 0.90564 0.91648 0.95000 0.90672 0.95372 0.90388 0.91808 0.89752 0.94629 0.93528 0.89296 0.90622 0.90362 0.90482 0.90486 0.77507 0.76720 0.88839 0.92838 0.95529 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.23 13.97 55.49 0.78 -26.45 16 2 C 0.09 2.70 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 22.07 27.74 -169.99 -4.72 17.36 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.50 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 9 S -0.22 -5.43 19.41 -107.50 -2.09 -7.52 16 10 C -0.08 -1.63 5.67 37.16 0.21 -1.42 16 11 C -0.10 -1.60 5.15 -26.73 -0.14 -1.74 16 12 C 0.06 0.84 4.96 -3.82 -0.02 0.82 16 13 N -0.53 -6.84 4.66 -234.68 -1.09 -7.93 16 14 C 0.06 0.61 5.46 -3.84 -0.02 0.59 16 15 C -0.11 -1.02 5.12 -26.65 -0.14 -1.16 16 16 C 0.08 0.78 1.73 -67.59 -0.12 0.67 16 17 N -0.49 -4.42 4.35 -215.47 -0.94 -5.36 16 18 C 0.04 0.23 5.35 -1.63 -0.01 0.22 16 19 C -0.12 -0.63 7.06 -24.87 -0.18 -0.81 16 20 C -0.12 -0.58 6.48 -25.37 -0.16 -0.75 16 21 C 0.05 0.33 2.38 -67.79 -0.16 0.17 16 22 H 0.08 0.49 7.65 -51.93 -0.40 0.09 16 23 C 0.52 4.75 5.89 -10.98 -0.06 4.68 16 24 N -0.86 -4.44 8.75 31.22 0.27 -4.17 16 25 O -0.51 -7.07 15.31 5.56 0.09 -6.99 16 26 C -0.10 -1.18 4.08 -26.65 -0.11 -1.29 16 27 C 0.05 0.66 5.29 -3.83 -0.02 0.64 16 28 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.06 1.29 8.14 -51.91 -0.42 0.87 16 30 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 33 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 35 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 36 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 37 H 0.06 0.50 7.05 -51.93 -0.37 0.13 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 40 H 0.05 0.28 8.03 -51.93 -0.42 -0.14 16 41 H 0.09 0.59 7.74 -51.93 -0.40 0.19 16 42 H 0.08 0.26 8.14 -51.94 -0.42 -0.16 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.35 7.63 -51.93 -0.40 -0.05 16 46 H 0.40 0.81 8.80 -40.82 -0.36 0.45 16 47 H 0.40 1.91 8.93 -40.82 -0.36 1.55 16 48 H 0.09 1.38 7.42 -51.92 -0.39 1.00 16 49 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 50 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.08 1.13 6.21 -51.93 -0.32 0.81 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -34.97 399.32 -11.51 -46.48 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -9.13 Total: -0.13 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.71 Total: -11.31 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.98 Total: -43.91 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.09 Total: -7.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.97 -11.51 -46.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159412989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.271 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds