Wall clock time and date at job start Wed Apr 1 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99838 * 2 1 4 4 H 1.48504 * 109.47374 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.47390 * 29.99647 * 3 2 1 6 6 H 1.48497 * 109.47119 * 149.99709 * 3 2 1 7 7 C 1.38789 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00494 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00108 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00062 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47269 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47550 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.46838 * 111.00001 * 169.99985 * 13 12 11 15 15 C 1.53034 * 109.52580 * 185.83690 * 14 13 12 16 16 C 1.53118 * 109.28189 * 300.82495 * 15 14 13 17 17 N 1.46893 * 109.52775 * 177.55517 * 16 15 14 18 18 C 1.49012 * 111.16628 * 57.80020 * 17 16 15 19 19 C 1.54936 * 103.26194 * 159.69258 * 18 17 16 20 20 C 1.54597 * 102.91936 * 322.54317 * 19 18 17 21 21 C 1.47900 * 111.00241 * 174.99801 * 17 16 15 22 22 H 1.09002 * 109.91739 * 333.51114 * 21 17 16 23 23 C 1.50702 * 109.91586 * 94.60764 * 21 17 16 24 24 N 1.34779 * 119.99837 * 179.60227 * 23 21 17 25 25 O 1.21278 * 120.00249 * 359.59609 * 23 21 17 26 26 C 1.53119 * 109.15936 * 57.64577 * 16 15 14 27 27 C 1.46853 * 110.99704 * 294.21159 * 13 12 11 28 28 H 0.96994 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46927 * 60.00184 * 10 9 7 30 30 H 1.09000 * 109.47429 * 300.00477 * 10 9 7 31 31 H 1.09002 * 109.47046 * 60.00196 * 11 10 9 32 32 H 1.09003 * 109.46863 * 300.00182 * 11 10 9 33 33 H 1.09002 * 109.46898 * 59.99967 * 12 11 10 34 34 H 1.08994 * 109.46780 * 300.00398 * 12 11 10 35 35 H 1.09010 * 109.46396 * 65.82377 * 14 13 12 36 36 H 1.08993 * 109.45735 * 305.85241 * 14 13 12 37 37 H 1.09000 * 109.50584 * 180.88016 * 15 14 13 38 38 H 1.08998 * 109.50169 * 60.76403 * 15 14 13 39 39 H 1.09004 * 109.52086 * 297.68226 * 16 15 14 40 40 H 1.09005 * 110.69031 * 41.22965 * 18 17 16 41 41 H 1.09000 * 110.75615 * 278.18558 * 18 17 16 42 42 H 1.08989 * 110.72581 * 204.18400 * 19 18 17 43 43 H 1.09005 * 110.87576 * 80.96887 * 19 18 17 44 44 H 1.09000 * 110.30898 * 263.03848 * 20 19 18 45 45 H 1.09005 * 110.38968 * 140.91622 * 20 19 18 46 46 H 0.97001 * 119.99840 * 359.97438 * 24 23 21 47 47 H 0.96998 * 119.99873 * 180.02562 * 24 23 21 48 48 H 1.09008 * 109.50235 * 62.29762 * 26 16 15 49 49 H 1.09001 * 109.50367 * 182.40571 * 26 16 15 50 50 H 1.08996 * 109.46156 * 294.17378 * 27 13 12 51 51 H 1.08997 * 109.46521 * 54.15866 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5958 -3.2362 0.0039 12 6 5.8616 -4.7430 0.0044 13 7 7.3105 -4.9847 0.0064 14 6 7.6071 -6.4028 0.2449 15 6 9.1192 -6.5926 0.3850 16 6 9.8095 -6.1160 -0.8959 17 7 11.2652 -6.2412 -0.7450 18 6 11.6555 -7.6462 -0.4382 19 6 13.1527 -7.6937 -0.8338 20 6 13.2047 -6.8044 -2.0974 21 6 11.9600 -5.9023 -2.0059 22 1 11.3021 -6.0902 -2.8544 23 6 12.3758 -4.4539 -1.9897 24 7 13.0353 -3.9303 -3.0420 25 8 12.1169 -3.7594 -1.0298 26 6 9.4453 -4.6502 -1.1475 27 6 7.9238 -4.5167 -1.2433 28 1 -0.4850 0.8400 -0.0004 29 1 3.6441 -3.4320 -0.8874 30 1 3.6433 -3.4309 0.8926 31 1 6.0380 -2.7887 0.8941 32 1 6.0395 -2.7896 -0.8860 33 1 5.4194 -5.1901 -0.8859 34 1 5.4178 -5.1898 0.8940 35 1 7.2429 -6.9962 -0.5938 36 1 7.1139 -6.7278 1.1609 37 1 9.3402 -7.6477 0.5465 38 1 9.4820 -6.0105 1.2321 39 1 9.4768 -6.7244 -1.7370 40 1 11.0763 -8.3469 -1.0397 41 1 11.5313 -7.8586 0.6236 42 1 13.4579 -8.7136 -1.0672 43 1 13.7768 -7.2772 -0.0431 44 1 13.1604 -7.4204 -2.9956 45 1 14.1114 -6.1992 -2.0988 46 1 13.2426 -4.4859 -3.8096 47 1 13.3032 -2.9981 -3.0314 48 1 9.8133 -4.0374 -0.3245 49 1 9.8992 -4.3174 -2.0809 50 1 7.5580 -5.1188 -2.0750 51 1 7.6607 -3.4719 -1.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159412989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:33 Heat of formation + Delta-G solvation = -68.240624 kcal Electronic energy + Delta-G solvation = -27900.137017 eV Core-core repulsion = 24151.542583 eV Total energy + Delta-G solvation = -3748.594434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46062 -39.91356 -38.56436 -35.93727 -34.69630 -34.57007 -33.41108 -32.01669 -30.52508 -30.07724 -28.00643 -26.73666 -24.70489 -24.27179 -23.24864 -22.20637 -21.57238 -20.81459 -20.62070 -19.61919 -18.45959 -17.79002 -17.42050 -17.12161 -16.70069 -16.53177 -16.09865 -15.94042 -15.62585 -15.54650 -15.12932 -14.97949 -14.80311 -14.75477 -14.45200 -14.05817 -13.79541 -13.61798 -13.48998 -13.38796 -13.11629 -13.05985 -12.89157 -12.58198 -12.39378 -12.27851 -12.15538 -12.03582 -11.95739 -11.78034 -11.72973 -11.62587 -11.36934 -11.18007 -11.10952 -10.74340 -10.56426 -10.52404 -9.35597 -9.26318 -9.00471 -8.52970 -6.24215 1.11292 1.30412 1.47383 1.73025 1.76343 2.24001 2.42715 2.67798 2.84804 2.89827 3.09711 3.57366 3.62569 3.83055 3.86333 3.97614 3.99384 4.11254 4.15885 4.24143 4.26150 4.30272 4.34825 4.38101 4.46345 4.55421 4.57476 4.62533 4.66433 4.74775 4.75937 4.77076 4.86785 4.88955 4.91935 5.03256 5.09451 5.13972 5.15181 5.25291 5.26632 5.29899 5.44133 5.68976 5.83461 6.01266 6.08871 6.09845 6.11634 6.18883 6.59511 6.91252 7.49205 8.60016 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.002004 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.476462 B =13971.475539 C =15038.272344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.037 3.963 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.232 1.232 7 C -0.520 4.520 8 H 0.052 0.948 9 S -0.226 6.226 10 C -0.067 4.067 11 C -0.085 4.085 12 C 0.071 3.929 13 N -0.548 5.548 14 C 0.059 3.941 15 C -0.099 4.099 16 C 0.086 3.914 17 N -0.512 5.512 18 C 0.034 3.966 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.044 3.956 22 H 0.089 0.911 23 C 0.515 3.485 24 N -0.845 5.845 25 O -0.566 6.566 26 C -0.088 4.088 27 C 0.055 3.945 28 H 0.277 0.723 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.415 0.585 47 H 0.405 0.595 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.037 0.963 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.171 -20.695 -8.252 39.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.167 4.167 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.155 1.155 7 C -0.668 4.668 8 H 0.070 0.930 9 S 0.002 5.998 10 C -0.216 4.216 11 C -0.124 4.124 12 C -0.058 4.058 13 N -0.273 5.273 14 C -0.069 4.069 15 C -0.137 4.137 16 C -0.022 4.022 17 N -0.237 5.237 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.068 4.068 22 H 0.107 0.893 23 C 0.299 3.701 24 N -0.410 5.410 25 O -0.443 6.443 26 C -0.126 4.126 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.246 0.754 47 H 0.236 0.764 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 32.813 -18.819 -6.747 38.423 hybrid contribution -1.899 -0.711 -1.583 2.573 sum 30.913 -19.530 -8.330 37.503 Atomic orbital electron populations 1.70034 1.07534 1.29086 1.49257 1.25766 0.95448 1.02707 0.92802 0.85717 0.80704 0.78736 0.80216 1.18570 1.18602 1.15538 1.22324 0.89929 0.96283 1.58243 0.93018 1.83942 1.07701 1.10541 1.97568 1.23057 1.00039 0.94895 1.03567 1.21222 0.91615 0.96702 1.02863 1.21968 0.87563 0.94850 1.01466 1.61852 1.10776 1.19319 1.35384 1.22115 0.96467 0.87016 1.01351 1.21561 0.93406 1.01560 0.97205 1.21798 0.87171 0.95761 0.97490 1.64497 1.06523 1.22918 1.29713 1.23395 0.96201 0.87651 1.02045 1.22485 0.95334 1.00911 0.97120 1.22446 0.95337 0.97321 1.00359 1.22409 0.98364 0.92235 0.93829 0.89323 1.20875 0.76901 0.90146 0.82204 1.43762 1.60433 1.16255 1.20554 1.90764 1.55331 1.62767 1.35473 1.21445 0.93600 0.96521 1.01066 1.22124 0.94686 1.00437 0.90040 0.91387 0.91588 0.91381 0.91413 0.91696 0.94304 0.89908 0.94215 0.89737 0.89495 0.92088 0.93425 0.92149 0.89775 0.88341 0.91778 0.87678 0.90390 0.75422 0.76436 0.92479 0.92926 0.94445 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.67 13.97 21.65 0.30 -57.37 16 2 C 0.04 2.25 5.50 84.85 0.47 2.72 16 3 Si 0.93 45.51 27.74 68.60 1.90 47.41 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.23 -11.14 6.74 99.48 0.67 -10.47 16 7 C -0.52 -31.51 10.04 67.95 0.68 -30.83 16 8 H 0.05 3.38 8.03 -2.91 -0.02 3.36 16 9 S -0.23 -11.35 19.41 -56.49 -1.10 -12.45 16 10 C -0.07 -2.66 5.67 71.98 0.41 -2.25 16 11 C -0.09 -2.75 5.15 30.60 0.16 -2.59 16 12 C 0.07 1.85 4.96 86.30 0.43 2.27 16 13 N -0.55 -13.47 4.66 -896.40 -4.17 -17.64 16 14 C 0.06 1.12 5.46 86.33 0.47 1.59 16 15 C -0.10 -1.77 5.12 30.65 0.16 -1.61 16 16 C 0.09 1.57 1.73 45.00 0.08 1.64 16 17 N -0.51 -8.72 4.35 -835.63 -3.63 -12.35 16 18 C 0.03 0.37 5.35 86.55 0.46 0.84 16 19 C -0.12 -0.95 7.06 31.80 0.22 -0.72 16 20 C -0.12 -0.77 6.48 31.47 0.20 -0.56 16 21 C 0.04 0.56 2.38 44.31 0.11 0.67 16 22 H 0.09 0.90 7.65 -2.39 -0.02 0.88 16 23 C 0.51 9.12 5.89 87.66 0.52 9.64 16 24 N -0.84 -7.66 8.75 -173.53 -1.52 -9.18 16 25 O -0.57 -16.39 15.31 -3.02 -0.05 -16.43 16 26 C -0.09 -2.07 4.08 30.65 0.13 -1.95 16 27 C 0.06 1.33 5.29 86.32 0.46 1.79 16 28 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.11 6.43 -2.39 -0.02 2.10 16 33 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 35 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.08 1.51 8.01 -2.39 -0.02 1.49 16 37 H 0.09 1.14 7.05 -2.39 -0.02 1.13 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 0.76 7.96 -2.38 -0.02 0.74 16 40 H 0.06 0.51 8.03 -2.38 -0.02 0.49 16 41 H 0.08 0.98 7.74 -2.39 -0.02 0.97 16 42 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.08 0.52 7.63 -2.38 -0.02 0.50 16 46 H 0.41 0.76 8.80 -92.71 -0.82 -0.05 16 47 H 0.40 3.54 8.93 -92.71 -0.83 2.72 16 48 H 0.06 1.78 7.42 -2.38 -0.02 1.76 16 49 H 0.05 1.21 6.43 -2.39 -0.02 1.19 16 50 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.07 1.82 6.21 -2.39 -0.01 1.80 16 Total: -1.00 -78.12 399.32 -4.08 -82.19 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.76 Total: 15.16 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 4.94 Total: -19.34 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -9.02 Total: -96.54 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.05 Total: -16.43 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -11.35 SS G_CDS: -1.10 Total: -12.45 kcal Total: -78.12 -4.08 -82.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159412989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.953 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds