Wall clock time and date at job start Wed Apr 1 2020 00:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.35474 * 124.78618 * 265.02448 * 11 10 9 13 13 C 1.36372 * 109.77145 * 179.97438 * 12 11 10 14 14 C 1.46907 * 126.77096 * 180.02562 * 13 12 11 15 15 O 1.21673 * 120.00608 * 179.97438 * 14 13 12 16 16 N 1.34783 * 120.00002 * 359.97343 * 14 13 12 17 17 C 1.46495 * 120.00238 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47310 * 180.02562 * 17 16 14 19 19 N 1.46900 * 109.47273 * 180.02562 * 18 17 16 20 20 C 1.47480 * 110.99865 * 74.03469 * 19 18 17 21 21 C 1.53506 * 87.93245 * 138.70479 * 20 19 18 22 22 C 1.47484 * 110.99841 * 170.00458 * 19 18 17 23 23 C 1.47448 * 106.46072 * 359.97438 * 13 12 11 24 24 C 1.39272 * 134.00595 * 179.97438 * 23 13 12 25 25 C 1.37752 * 119.67424 * 180.02562 * 24 23 13 26 26 C 1.38758 * 120.29929 * 0.02562 * 25 24 23 27 27 C 1.37764 * 120.63344 * 359.97438 * 26 25 24 28 28 C 1.37963 * 124.79028 * 84.71582 * 11 10 9 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.07996 * 125.11488 * 359.97438 * 12 11 10 35 35 H 0.96998 * 119.99466 * 0.02562 * 16 14 13 36 36 H 1.08999 * 109.47579 * 300.01215 * 17 16 14 37 37 H 1.09010 * 109.46646 * 60.00360 * 17 16 14 38 38 H 1.08999 * 109.47783 * 300.01080 * 18 17 16 39 39 H 1.09001 * 109.47007 * 60.00823 * 18 17 16 40 40 H 1.09001 * 113.47625 * 253.47063 * 20 19 18 41 41 H 1.09001 * 113.47848 * 23.93305 * 20 19 18 42 42 H 1.09008 * 114.16811 * 220.32941 * 21 20 19 43 43 H 1.08995 * 114.35020 * 87.63720 * 21 20 19 44 44 H 1.08995 * 113.47477 * 336.06455 * 22 19 18 45 45 H 1.09003 * 113.47238 * 106.53541 * 22 19 18 46 46 H 1.08006 * 120.16096 * 359.97438 * 24 23 13 47 47 H 1.07990 * 119.85347 * 180.02562 * 25 24 23 48 48 H 1.07999 * 119.68117 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.03504 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4865 -2.6366 0.0175 12 6 6.2645 -2.7352 -1.0872 13 6 7.5800 -2.7034 -0.7293 14 6 8.7384 -2.7832 -1.6292 15 8 9.8662 -2.7423 -1.1744 16 7 8.5519 -2.9017 -2.9588 17 6 9.7070 -2.9808 -3.8563 18 6 9.2221 -3.1092 -5.3017 19 7 10.3804 -3.1891 -6.2016 20 6 11.0301 -4.5099 -6.1108 21 6 11.1856 -4.4765 -7.6376 22 6 9.9631 -3.5505 -7.5693 23 6 7.6104 -2.5718 0.7390 24 6 8.6319 -2.4880 1.6820 25 6 8.3186 -2.3686 3.0181 26 6 6.9927 -2.3323 3.4256 27 6 5.9724 -2.4143 2.5036 28 6 6.2684 -2.5302 1.1491 29 1 -0.4849 0.8400 0.0004 30 1 3.8786 -0.6821 -0.8838 31 1 3.8711 -0.6785 0.8962 32 1 3.6545 -3.1486 0.9003 33 1 3.6618 -3.1522 -0.8796 34 1 5.8980 -2.8254 -2.0990 35 1 7.6528 -2.9340 -3.3214 36 1 10.3090 -2.0779 -3.7542 37 1 10.3102 -3.8508 -3.5964 38 1 8.6198 -4.0119 -5.4041 39 1 8.6192 -2.2389 -5.5613 40 1 11.9803 -4.4907 -5.5770 41 1 10.3643 -5.2981 -5.7592 42 1 10.9950 -5.4319 -8.1266 43 1 12.0960 -3.9889 -7.9860 44 1 9.0126 -4.0826 -7.6069 45 1 10.0092 -2.7181 -8.2715 46 1 9.6647 -2.5173 1.3673 47 1 9.1084 -2.3030 3.7516 48 1 6.7584 -2.2380 4.4757 49 1 4.9438 -2.3846 2.8315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346405190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:55 Heat of formation + Delta-G solvation = 55.241913 kcal Electronic energy + Delta-G solvation = -28489.861012 eV Core-core repulsion = 24611.177232 eV Total energy + Delta-G solvation = -3878.683781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33824 -40.45041 -39.03379 -36.98552 -35.12685 -34.17606 -32.49652 -31.53527 -30.66631 -29.11010 -28.86795 -26.93068 -26.20722 -25.22794 -23.02834 -22.61501 -21.89642 -21.53710 -20.45660 -20.28211 -19.58433 -17.64504 -16.98527 -16.74941 -16.40680 -16.20338 -15.68879 -15.41615 -15.32284 -15.15108 -14.92587 -14.45069 -14.19356 -13.95665 -13.71472 -13.66398 -13.16224 -13.13738 -12.99971 -12.81296 -12.52354 -12.41694 -12.02048 -11.86967 -11.73791 -11.51924 -11.37037 -11.25779 -11.21159 -10.98630 -10.77327 -10.45907 -10.32035 -10.02379 -9.79223 -9.52580 -9.37157 -9.36179 -9.12142 -8.75582 -8.05682 -7.45328 -6.26354 -4.28620 1.18076 1.77040 2.22014 2.94163 3.08566 3.17546 3.26784 3.31242 3.57927 3.73474 4.02337 4.17803 4.26967 4.38536 4.44887 4.68934 4.73796 4.88464 4.89143 4.91642 4.97928 5.07419 5.09371 5.20551 5.24530 5.31143 5.36067 5.38077 5.43088 5.53189 5.61885 5.68009 5.74070 5.76258 5.81765 5.86465 5.90383 5.93304 6.12214 6.27241 6.34341 6.59011 6.62888 6.78363 6.83840 6.85897 6.87752 7.05626 7.34110 7.38913 7.52584 7.57095 8.23438 8.37711 8.73833 9.34064 10.85886 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.002696 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.571471 B =10382.554690 C =12751.933354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.110 3.890 11 N -0.454 5.454 12 C 0.121 3.879 13 C -0.254 4.254 14 C 0.598 3.402 15 O -0.547 6.547 16 N -0.736 5.736 17 C 0.130 3.870 18 C 0.007 3.993 19 N -0.469 5.469 20 C -0.006 4.006 21 C -0.147 4.147 22 C -0.002 4.002 23 C -0.062 4.062 24 C -0.072 4.072 25 C -0.145 4.145 26 C -0.109 4.109 27 C -0.115 4.115 28 C 0.090 3.910 29 H 0.267 0.733 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.520 -9.506 -9.387 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.094 0.906 9 C -0.062 4.062 10 C -0.009 4.009 11 N -0.131 5.131 12 C -0.014 4.014 13 C -0.265 4.265 14 C 0.389 3.611 15 O -0.425 6.425 16 N -0.389 5.389 17 C 0.006 3.994 18 C -0.122 4.122 19 N -0.192 5.192 20 C -0.135 4.135 21 C -0.185 4.185 22 C -0.131 4.131 23 C -0.066 4.066 24 C -0.091 4.091 25 C -0.164 4.164 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.015 4.015 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.188 0.812 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.146 0.854 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.151 -8.731 -8.886 22.847 hybrid contribution -0.969 0.309 -0.359 1.078 sum 18.183 -8.422 -9.244 22.068 Atomic orbital electron populations 1.69884 1.06269 1.27332 1.49672 1.24946 0.94722 0.99166 0.93970 0.86817 0.80473 0.83543 0.78782 1.20087 1.21010 1.18920 1.20835 0.88278 0.94904 1.52864 0.90595 1.19935 0.97853 0.90784 0.97622 1.22243 0.72939 1.01816 1.03909 1.44377 1.07770 1.56698 1.04263 1.22060 0.89671 0.97595 0.92103 1.19755 0.91553 1.22498 0.92695 1.17200 0.88041 0.75080 0.80822 1.90742 1.24614 1.50957 1.76230 1.45727 1.09535 1.77164 1.06509 1.21068 0.88447 1.02926 0.87001 1.22859 0.93886 1.02122 0.93321 1.68911 1.19261 1.28552 1.02443 1.23842 1.01080 0.91399 0.97210 1.23111 0.99121 1.00052 0.96211 1.23795 0.97778 0.99188 0.92360 1.18689 0.92098 1.04372 0.91438 1.20573 0.98615 0.98294 0.91602 1.20902 0.96216 1.03837 0.95426 1.20776 0.92242 1.00990 0.98788 1.20168 1.00086 1.03990 0.89264 1.18289 0.89614 1.04900 0.88680 0.92342 0.96334 0.95676 0.89519 0.89276 0.81152 0.76921 0.90697 0.91676 0.93292 0.89679 0.89447 0.91094 0.90572 0.88810 0.91151 0.89513 0.85437 0.86202 0.85874 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -13.83 9.66 -34.44 -0.33 -14.17 16 8 H 0.08 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.02 -0.52 4.36 -27.88 -0.12 -0.64 16 10 C 0.11 1.91 5.89 -4.05 -0.02 1.88 16 11 N -0.45 -7.44 2.74 -114.23 -0.31 -7.75 16 12 C 0.12 1.71 10.75 -16.62 -0.18 1.54 16 13 C -0.25 -3.99 6.27 -103.31 -0.65 -4.64 16 14 C 0.60 9.11 7.80 -12.75 -0.10 9.01 16 15 O -0.55 -10.06 16.16 5.21 0.08 -9.97 16 16 N -0.74 -8.21 5.54 -61.55 -0.34 -8.55 16 17 C 0.13 1.33 5.78 -4.05 -0.02 1.31 16 18 C 0.01 0.06 4.94 -3.83 -0.02 0.04 16 19 N -0.47 -3.82 6.41 -244.67 -1.57 -5.39 16 20 C -0.01 -0.04 7.00 -7.55 -0.05 -0.10 16 21 C -0.15 -0.80 8.47 -26.20 -0.22 -1.02 16 22 C 0.00 -0.01 7.70 -7.54 -0.06 -0.07 16 23 C -0.06 -1.06 6.27 -104.95 -0.66 -1.72 16 24 C -0.07 -1.16 9.85 -39.37 -0.39 -1.54 16 25 C -0.14 -2.02 10.03 -39.57 -0.40 -2.42 16 26 C -0.11 -1.52 10.01 -39.56 -0.40 -1.91 16 27 C -0.11 -1.83 9.97 -39.42 -0.39 -2.23 16 28 C 0.09 1.55 6.79 -83.97 -0.57 0.98 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.02 0.40 7.58 -51.93 -0.39 0.01 16 31 H 0.02 0.58 7.19 -51.93 -0.37 0.20 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 34 H 0.17 1.70 7.38 -52.49 -0.39 1.31 16 35 H 0.40 3.36 7.35 -40.82 -0.30 3.06 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.71 7.67 -51.92 -0.40 0.32 16 38 H 0.05 0.33 7.56 -51.93 -0.39 -0.06 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.45 7.70 -51.93 -0.40 0.05 16 42 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.38 7.77 -51.93 -0.40 -0.02 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.13 2.03 7.45 -52.48 -0.39 1.64 16 47 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -32.86 403.28 -12.31 -45.17 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.67 Total: 3.24 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -4.68 Total: -13.74 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -1.45 Total: -47.01 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.86 -12.31 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346405190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.416 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds