Wall clock time and date at job start Wed Apr 1 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99878 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00312 * 3 2 1 5 5 H 1.48498 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46620 * 120.00602 * 3 2 1 7 7 C 1.37876 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.35036 * 125.92781 * 124.99754 * 10 9 7 12 12 C 1.35082 * 107.98287 * 179.74522 * 11 10 9 13 13 C 1.50698 * 126.08157 * 180.24726 * 12 11 10 14 14 N 1.46906 * 109.47076 * 256.70902 * 13 12 11 15 15 C 1.46899 * 110.99583 * 184.65319 * 14 13 12 16 16 C 1.53007 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.47369 * 305.00390 * 16 15 14 18 18 O 1.42904 * 109.46698 * 65.00122 * 16 15 14 19 19 C 1.52995 * 109.47187 * 185.00030 * 16 15 14 20 20 C 1.52997 * 117.50101 * 248.75087 * 19 16 15 21 21 C 1.52997 * 117.49857 * 180.08813 * 19 16 15 22 22 C 1.40856 * 107.84323 * 0.37382 * 12 11 10 23 23 C 1.48419 * 126.03498 * 179.88739 * 22 12 11 24 24 C 1.39328 * 120.12195 * 42.63760 * 23 22 12 25 25 C 1.38018 * 119.88052 * 179.97438 * 24 23 22 26 26 C 1.38325 * 120.11942 * 359.97438 * 25 24 23 27 27 C 1.38316 * 120.23951 * 0.02562 * 26 25 24 28 28 C 1.38024 * 120.12202 * 359.97438 * 27 26 25 29 29 N 1.31615 * 107.92478 * 359.62429 * 22 12 11 30 30 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47491 * 60.00556 * 9 7 2 32 32 H 1.09001 * 109.47371 * 300.00031 * 9 7 2 33 33 H 1.08004 * 126.01209 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47010 * 16.70820 * 13 12 11 35 35 H 1.09004 * 109.47022 * 136.71214 * 13 12 11 36 36 H 1.00899 * 111.00161 * 308.60707 * 14 13 12 37 37 H 1.08999 * 109.47259 * 299.99852 * 15 14 13 38 38 H 1.09001 * 109.47052 * 60.00671 * 15 14 13 39 39 H 0.96697 * 114.00075 * 60.00169 * 18 16 15 40 40 H 1.08997 * 115.54867 * 34.42034 * 19 16 15 41 41 H 1.09002 * 117.50008 * 359.97438 * 20 19 16 42 42 H 1.08998 * 117.50442 * 145.01999 * 20 19 16 43 43 H 1.09007 * 117.49900 * 214.97936 * 21 19 16 44 44 H 1.09004 * 117.50183 * 0.02562 * 21 19 16 45 45 H 1.08002 * 120.05679 * 359.95814 * 24 23 22 46 46 H 1.07995 * 119.94070 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.87886 * 179.74813 * 26 25 24 48 48 H 1.08005 * 119.93775 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.05845 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2420 -4.6228 0.8935 12 6 3.2547 -5.4473 0.5481 13 6 3.6573 -6.7085 1.2682 14 7 4.8648 -6.4532 2.0650 15 6 5.3509 -7.6883 2.6945 16 6 6.6061 -7.3829 3.5143 17 1 7.3469 -6.8986 2.8780 18 8 6.2679 -6.5142 4.5975 19 6 7.1836 -8.6871 4.0677 20 6 7.1030 -8.9102 5.5792 21 6 8.4489 -8.5928 4.9227 22 6 3.8694 -4.9173 -0.6030 23 6 5.0285 -5.5025 -1.3219 24 6 5.0906 -6.8760 -1.5473 25 6 6.1706 -7.4148 -2.2167 26 6 7.1900 -6.5938 -2.6641 27 6 7.1334 -5.2296 -2.4430 28 6 6.0580 -4.6802 -1.7746 29 7 3.2307 -3.8145 -0.9319 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5772 -4.7516 1.7349 34 1 2.8481 -7.0252 1.9261 35 1 3.8618 -7.4932 0.5398 36 1 5.5855 -6.0260 1.5027 37 1 4.5783 -8.0905 3.3498 38 1 5.5898 -8.4198 1.9225 39 1 5.6120 -6.8812 5.2059 40 1 7.0753 -9.5598 3.4237 41 1 6.6389 -8.1276 6.1794 42 1 6.9420 -9.9297 5.9297 43 1 9.1728 -9.4037 4.8415 44 1 8.8697 -7.6015 5.0913 45 1 4.2951 -7.5179 -1.1985 46 1 6.2195 -8.4793 -2.3923 47 1 8.0352 -7.0201 -3.1839 48 1 7.9323 -4.5931 -2.7941 49 1 6.0147 -3.6148 -1.6030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371658171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:04 Heat of formation + Delta-G solvation = 72.262015 kcal Electronic energy + Delta-G solvation = -28915.568034 eV Core-core repulsion = 25037.622301 eV Total energy + Delta-G solvation = -3877.945734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61921 -39.11877 -38.68452 -36.05293 -34.89539 -33.74701 -32.31906 -31.10350 -30.63680 -30.01494 -28.49031 -26.91111 -24.50922 -23.71743 -22.95246 -22.44476 -22.28502 -21.66612 -20.69149 -19.91588 -19.20229 -17.03530 -16.83149 -16.63140 -16.30717 -15.96410 -15.39693 -15.09338 -14.92726 -14.73359 -14.66199 -14.18664 -13.99712 -13.67289 -13.40715 -13.26215 -13.04480 -12.83524 -12.50333 -12.38579 -12.23674 -11.97897 -11.87477 -11.75515 -11.58408 -11.35047 -11.05250 -11.02026 -10.87758 -10.80519 -10.77419 -10.40769 -10.25567 -10.05977 -9.92298 -9.60562 -9.08246 -8.84410 -8.62473 -8.32788 -8.15269 -7.55929 -6.25392 -4.30415 1.29835 1.50776 2.73010 3.19166 3.26722 3.29464 3.33623 3.44943 3.49412 3.98262 4.09057 4.31581 4.40844 4.61495 4.66246 4.71516 4.88301 4.98878 5.00485 5.03210 5.06931 5.10473 5.19046 5.24845 5.28811 5.35939 5.49804 5.52887 5.58888 5.61915 5.66855 5.73514 5.82379 5.86000 5.87459 5.91884 6.04706 6.10459 6.24504 6.47454 6.59025 6.63669 6.71019 6.93678 7.01100 7.07752 7.12950 7.31656 7.47014 7.63470 7.68305 7.85090 7.96988 8.53069 8.77667 9.35416 10.83595 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.002968 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.573176 B = 9430.585099 C =11110.054864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.321 5.321 11 C 0.068 3.932 12 C -0.248 4.248 13 C 0.145 3.855 14 N -0.674 5.674 15 C 0.032 3.968 16 C 0.140 3.860 17 H 0.099 0.901 18 O -0.545 6.545 19 C -0.191 4.191 20 C -0.178 4.178 21 C -0.171 4.171 22 C 0.075 3.925 23 C 0.012 3.988 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.095 4.095 29 N -0.262 5.262 30 H 0.268 0.732 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.166 0.834 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.343 0.657 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.371 0.629 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.063 -20.396 4.568 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.101 5.101 11 C -0.082 4.082 12 C -0.260 4.260 13 C 0.016 3.984 14 N -0.306 5.306 15 C -0.098 4.098 16 C 0.080 3.920 17 H 0.116 0.884 18 O -0.350 6.350 19 C -0.210 4.210 20 C -0.215 4.215 21 C -0.208 4.208 22 C -0.088 4.088 23 C 0.010 3.990 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.115 4.115 29 N -0.086 5.086 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.218 0.782 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.722 -18.526 4.013 22.829 hybrid contribution 0.262 -0.576 0.062 0.636 sum 12.983 -19.102 4.074 23.453 Atomic orbital electron populations 1.69909 1.06055 1.27778 1.49626 1.24934 0.94982 0.99553 0.94495 0.86384 0.79408 0.81718 0.79017 1.19886 1.21022 1.19940 1.21188 0.93950 0.89294 1.52300 0.91329 1.19765 0.85713 0.81324 0.99271 1.49396 1.23475 1.19200 1.18011 1.22208 1.00017 0.89864 0.96144 1.19564 1.02707 1.02635 1.01124 1.20086 0.92284 0.92649 0.93364 1.60489 1.08316 1.24421 1.37362 1.22614 0.97160 0.92072 0.97995 1.21360 0.94950 0.87915 0.87743 0.88356 1.86641 1.63730 1.45222 1.39456 1.23143 1.03187 1.00385 0.94321 1.22956 1.01292 1.02577 0.94643 1.22915 0.90811 1.03168 1.03912 1.20432 0.97192 0.94870 0.96309 1.17879 0.91852 0.92498 0.96743 1.21180 0.98344 0.94096 0.99184 1.20983 0.94423 0.99515 0.99225 1.21123 0.98841 0.93837 1.00637 1.21079 0.98270 0.95161 0.99272 1.21334 0.93021 1.00242 0.96863 1.77642 1.01082 1.15774 1.14078 0.92247 0.93665 0.92634 0.81709 0.91163 0.95065 0.83864 0.90867 0.94821 0.78160 0.87418 0.88123 0.88968 0.89055 0.88357 0.85905 0.86283 0.86430 0.86077 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.77 9.23 -34.44 -0.32 -15.09 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.50 6.26 -5.19 -0.03 6.46 16 10 N -0.32 -7.32 3.67 -62.58 -0.23 -7.55 16 11 C 0.07 1.29 11.32 -17.26 -0.20 1.09 16 12 C -0.25 -4.28 5.55 -104.76 -0.58 -4.86 16 13 C 0.15 1.94 5.72 -4.97 -0.03 1.91 16 14 N -0.67 -8.75 6.47 -115.05 -0.74 -9.50 16 15 C 0.03 0.31 5.30 -3.82 -0.02 0.29 16 16 C 0.14 1.35 3.51 -26.73 -0.09 1.25 16 17 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 18 O -0.55 -6.10 12.44 -35.23 -0.44 -6.54 16 19 C -0.19 -1.48 5.70 -90.62 -0.52 -1.99 16 20 C -0.18 -1.24 9.74 -26.69 -0.26 -1.50 16 21 C -0.17 -1.31 10.19 -26.69 -0.27 -1.58 16 22 C 0.08 1.44 6.67 -82.78 -0.55 0.88 16 23 C 0.01 0.19 5.74 -104.90 -0.60 -0.41 16 24 C -0.11 -1.43 8.86 -39.26 -0.35 -1.78 16 25 C -0.12 -1.37 10.03 -39.63 -0.40 -1.77 16 26 C -0.13 -1.38 10.04 -39.52 -0.40 -1.77 16 27 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 28 C -0.10 -1.46 9.78 -39.26 -0.38 -1.84 16 29 N -0.26 -5.99 12.44 33.43 0.42 -5.58 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.17 2.64 8.06 -52.48 -0.42 2.21 16 34 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 35 H 0.03 0.38 5.63 -51.93 -0.29 0.09 16 36 H 0.34 4.86 8.66 -39.29 -0.34 4.52 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.37 3.10 7.56 45.56 0.34 3.45 16 40 H 0.11 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.10 0.69 6.38 -51.93 -0.33 0.36 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.12 1.50 6.19 -52.49 -0.33 1.18 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 49 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 410.46 15.07 6.19 6.19 Total: -1.00 -31.09 410.46 -11.42 -42.50 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.83 Total: 9.54 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -5.49 Total: -20.92 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.18 Total: -47.31 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.44 Total: -6.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.09 -11.42 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371658171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.764 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds