Wall clock time and date at job start Wed Apr 1 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99878 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00312 * 3 2 1 5 5 H 1.48498 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46620 * 120.00602 * 3 2 1 7 7 C 1.37876 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.35036 * 125.92781 * 124.99754 * 10 9 7 12 12 C 1.35082 * 107.98287 * 179.74522 * 11 10 9 13 13 C 1.50698 * 126.08157 * 180.24726 * 12 11 10 14 14 N 1.46906 * 109.47076 * 256.70902 * 13 12 11 15 15 C 1.46899 * 110.99583 * 184.65319 * 14 13 12 16 16 C 1.53007 * 109.46812 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.47369 * 305.00390 * 16 15 14 18 18 O 1.42904 * 109.46698 * 65.00122 * 16 15 14 19 19 C 1.52995 * 109.47187 * 185.00030 * 16 15 14 20 20 C 1.52997 * 117.50101 * 248.75087 * 19 16 15 21 21 C 1.52997 * 117.49857 * 180.08813 * 19 16 15 22 22 C 1.40856 * 107.84323 * 0.37382 * 12 11 10 23 23 C 1.48419 * 126.03498 * 179.88739 * 22 12 11 24 24 C 1.39328 * 120.12195 * 42.63760 * 23 22 12 25 25 C 1.38018 * 119.88052 * 179.97438 * 24 23 22 26 26 C 1.38325 * 120.11942 * 359.97438 * 25 24 23 27 27 C 1.38316 * 120.23951 * 0.02562 * 26 25 24 28 28 C 1.38024 * 120.12202 * 359.97438 * 27 26 25 29 29 N 1.31615 * 107.92478 * 359.62429 * 22 12 11 30 30 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47491 * 60.00556 * 9 7 2 32 32 H 1.09001 * 109.47371 * 300.00031 * 9 7 2 33 33 H 1.08004 * 126.01209 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47010 * 16.70820 * 13 12 11 35 35 H 1.09004 * 109.47022 * 136.71214 * 13 12 11 36 36 H 1.00899 * 111.00161 * 308.60707 * 14 13 12 37 37 H 1.08999 * 109.47259 * 299.99852 * 15 14 13 38 38 H 1.09001 * 109.47052 * 60.00671 * 15 14 13 39 39 H 0.96697 * 114.00075 * 60.00169 * 18 16 15 40 40 H 1.08997 * 115.54867 * 34.42034 * 19 16 15 41 41 H 1.09002 * 117.50008 * 359.97438 * 20 19 16 42 42 H 1.08998 * 117.50442 * 145.01999 * 20 19 16 43 43 H 1.09007 * 117.49900 * 214.97936 * 21 19 16 44 44 H 1.09004 * 117.50183 * 0.02562 * 21 19 16 45 45 H 1.08002 * 120.05679 * 359.95814 * 24 23 22 46 46 H 1.07995 * 119.94070 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.87886 * 179.74813 * 26 25 24 48 48 H 1.08005 * 119.93775 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.05845 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2420 -4.6228 0.8935 12 6 3.2547 -5.4473 0.5481 13 6 3.6573 -6.7085 1.2682 14 7 4.8648 -6.4532 2.0650 15 6 5.3509 -7.6883 2.6945 16 6 6.6061 -7.3829 3.5143 17 1 7.3469 -6.8986 2.8780 18 8 6.2679 -6.5142 4.5975 19 6 7.1836 -8.6871 4.0677 20 6 7.1030 -8.9102 5.5792 21 6 8.4489 -8.5928 4.9227 22 6 3.8694 -4.9173 -0.6030 23 6 5.0285 -5.5025 -1.3219 24 6 5.0906 -6.8760 -1.5473 25 6 6.1706 -7.4148 -2.2167 26 6 7.1900 -6.5938 -2.6641 27 6 7.1334 -5.2296 -2.4430 28 6 6.0580 -4.6802 -1.7746 29 7 3.2307 -3.8145 -0.9319 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5772 -4.7516 1.7349 34 1 2.8481 -7.0252 1.9261 35 1 3.8618 -7.4932 0.5398 36 1 5.5855 -6.0260 1.5027 37 1 4.5783 -8.0905 3.3498 38 1 5.5898 -8.4198 1.9225 39 1 5.6120 -6.8812 5.2059 40 1 7.0753 -9.5598 3.4237 41 1 6.6389 -8.1276 6.1794 42 1 6.9420 -9.9297 5.9297 43 1 9.1728 -9.4037 4.8415 44 1 8.8697 -7.6015 5.0913 45 1 4.2951 -7.5179 -1.1985 46 1 6.2195 -8.4793 -2.3923 47 1 8.0352 -7.0201 -3.1839 48 1 7.9323 -4.5931 -2.7941 49 1 6.0147 -3.6148 -1.6030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371658171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:03 Heat of formation + Delta-G solvation = 52.428887 kcal Electronic energy + Delta-G solvation = -28916.428063 eV Core-core repulsion = 25037.622301 eV Total energy + Delta-G solvation = -3878.805763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10132 -39.84705 -39.72947 -36.99247 -35.84567 -35.49297 -33.92328 -32.24309 -31.77529 -31.37993 -29.69624 -28.50634 -25.82451 -25.22855 -23.68827 -23.46680 -23.16657 -22.86139 -21.49524 -21.25597 -20.56509 -18.68368 -18.04774 -17.72244 -17.34599 -17.17595 -16.54480 -16.25717 -16.08564 -15.95274 -15.63993 -15.49263 -15.32965 -14.87857 -14.46702 -14.36011 -14.18675 -14.06261 -13.86718 -13.72006 -13.44948 -13.23728 -13.08587 -12.95089 -12.73748 -12.64341 -12.32296 -12.29482 -12.10206 -12.04640 -11.95044 -11.81913 -11.36754 -11.26372 -11.04393 -10.79741 -10.65865 -10.47589 -9.83806 -9.62357 -9.27667 -8.95454 -8.37466 -6.51697 0.21955 0.51221 1.20220 1.34210 1.36217 1.45142 1.83041 1.91481 2.31413 2.86648 2.93914 2.95161 3.26780 3.62015 3.70253 3.87292 3.91062 4.02704 4.05038 4.07202 4.13572 4.23624 4.30822 4.34919 4.39271 4.42563 4.56860 4.60236 4.60800 4.69047 4.78432 4.79943 4.83377 4.87737 5.03606 5.05738 5.10671 5.15064 5.19952 5.26881 5.27774 5.30931 5.50034 5.52034 5.61688 5.68839 5.78423 5.87726 6.10327 6.19747 6.27487 6.44689 6.59846 6.93384 6.99260 7.18271 8.70171 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.002968 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.573176 B = 9430.585099 C =11110.054864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.048 0.952 9 C 0.273 3.727 10 N -0.351 5.351 11 C 0.055 3.945 12 C -0.238 4.238 13 C 0.153 3.847 14 N -0.688 5.688 15 C 0.038 3.962 16 C 0.142 3.858 17 H 0.083 0.917 18 O -0.568 6.568 19 C -0.188 4.188 20 C -0.172 4.172 21 C -0.179 4.179 22 C 0.084 3.916 23 C -0.018 4.018 24 C -0.107 4.107 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.120 4.120 29 N -0.321 5.321 30 H 0.274 0.726 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.191 0.809 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.333 0.667 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.381 0.619 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.157 0.843 47 H 0.155 0.845 48 H 0.141 0.859 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -23.397 4.729 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.066 0.934 9 C 0.154 3.846 10 N -0.131 5.131 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.024 3.976 14 N -0.319 5.319 15 C -0.092 4.092 16 C 0.082 3.918 17 H 0.101 0.899 18 O -0.375 6.375 19 C -0.207 4.207 20 C -0.209 4.209 21 C -0.216 4.216 22 C -0.080 4.080 23 C -0.020 4.020 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.139 4.139 29 N -0.145 5.145 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.231 0.769 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.150 0.850 46 H 0.174 0.826 47 H 0.173 0.827 48 H 0.159 0.841 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.647 -21.558 4.193 26.398 hybrid contribution -0.209 0.219 -0.020 0.304 sum 14.438 -21.339 4.173 26.100 Atomic orbital electron populations 1.69984 1.07153 1.28883 1.49782 1.25728 0.95873 1.02679 0.93784 0.85436 0.78385 0.77955 0.78898 1.19989 1.19379 1.19457 1.21331 0.93178 0.91110 1.53061 0.93365 1.19259 0.85833 0.81742 0.97751 1.49087 1.24201 1.19973 1.19820 1.22809 1.01082 0.89142 0.96248 1.20036 1.01300 1.03405 1.00262 1.20108 0.93001 0.90708 0.93808 1.60463 1.08006 1.26377 1.37088 1.22633 0.97374 0.90914 0.98232 1.21316 0.94636 0.88520 0.87301 0.89941 1.86608 1.64327 1.46408 1.40164 1.23050 1.03078 0.99643 0.94933 1.23031 1.00430 1.03338 0.94058 1.22949 0.91351 1.02892 1.04409 1.21089 0.96995 0.93471 0.96453 1.17962 0.91302 0.93995 0.98747 1.21308 0.99473 0.92579 0.99273 1.21411 0.93059 1.01394 0.97285 1.21576 0.99596 0.92866 0.99140 1.21320 0.97579 0.96573 0.98377 1.21262 0.94760 0.99038 0.98856 1.77557 1.02559 1.18580 1.15786 0.91743 0.96374 0.92739 0.79252 0.89725 0.93273 0.84920 0.89799 0.93238 0.76933 0.86008 0.88292 0.87522 0.87799 0.89862 0.84957 0.82558 0.82726 0.84146 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.55 -32.28 9.23 25.60 0.24 -32.05 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.27 14.75 6.26 85.63 0.54 15.28 16 10 N -0.35 -16.99 3.67 -351.91 -1.29 -18.28 16 11 C 0.06 2.17 11.32 83.47 0.95 3.12 16 12 C -0.24 -8.30 5.55 -19.95 -0.11 -8.41 16 13 C 0.15 3.83 5.72 85.56 0.49 4.31 16 14 N -0.69 -16.98 6.47 -517.91 -3.35 -20.33 16 15 C 0.04 0.65 5.30 86.31 0.46 1.11 16 16 C 0.14 2.52 3.51 30.59 0.11 2.63 16 17 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 18 O -0.57 -12.28 12.44 -148.98 -1.85 -14.14 16 19 C -0.19 -2.47 5.70 -10.80 -0.06 -2.53 16 20 C -0.17 -2.02 9.74 30.62 0.30 -1.72 16 21 C -0.18 -2.43 10.19 30.62 0.31 -2.12 16 22 C 0.08 3.33 6.67 42.53 0.28 3.61 16 23 C -0.02 -0.59 5.74 -20.04 -0.12 -0.70 16 24 C -0.11 -2.59 8.86 22.48 0.20 -2.39 16 25 C -0.11 -2.06 10.03 22.24 0.22 -1.83 16 26 C -0.11 -2.04 10.04 22.31 0.22 -1.81 16 27 C -0.12 -2.79 10.03 22.24 0.22 -2.57 16 28 C -0.12 -3.77 9.78 22.48 0.22 -3.55 16 29 N -0.32 -15.71 12.44 -48.15 -0.60 -16.31 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 2.88 8.07 -2.39 -0.02 2.86 16 33 H 0.19 6.13 8.06 -2.91 -0.02 6.11 16 34 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 35 H 0.05 1.07 5.63 -2.38 -0.01 1.05 16 36 H 0.33 9.31 8.66 -89.69 -0.78 8.53 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.38 5.97 7.56 -74.06 -0.56 5.41 16 40 H 0.12 1.28 8.11 -2.39 -0.02 1.26 16 41 H 0.10 1.19 6.38 -2.39 -0.02 1.18 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.13 2.88 6.19 -2.91 -0.02 2.86 16 46 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 49 H 0.10 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -71.84 410.46 -0.22 -72.06 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.37 Total: 31.03 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.93 Total: -28.03 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.96 Total: -108.15 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.85 Total: -14.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.84 -0.22 -72.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371658171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.491 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds