Wall clock time and date at job start Wed Apr 1 2020 00:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46797 * 225.32249 * 3 2 1 5 5 N 1.46502 * 109.46722 * 177.48011 * 4 3 2 6 6 C 1.46500 * 120.00272 * 85.30297 * 5 4 3 7 7 C 1.50700 * 109.46963 * 89.99776 * 6 5 4 8 8 H 1.08003 * 120.00089 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99968 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99757 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99971 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47279 * 90.00197 * 11 9 7 13 13 H 1.48498 * 109.47043 * 210.00424 * 11 9 7 14 14 H 1.48509 * 109.47238 * 330.00316 * 11 9 7 15 15 C 1.34778 * 119.99466 * 265.30182 * 5 4 3 16 16 O 1.21276 * 120.00585 * 4.71062 * 15 5 4 17 17 C 1.50702 * 119.99560 * 184.71018 * 15 5 4 18 18 H 1.09000 * 110.29238 * 325.77693 * 17 15 5 19 19 C 1.54256 * 110.32517 * 87.90465 * 17 15 5 20 20 C 1.54386 * 105.05904 * 118.89433 * 19 17 15 21 21 N 1.48551 * 104.59362 * 23.85643 * 20 19 17 22 22 C 1.46904 * 110.99936 * 200.95635 * 21 20 19 23 23 C 1.50689 * 109.47433 * 290.12690 * 22 21 20 24 24 C 1.38237 * 120.00135 * 269.72954 * 23 22 21 25 25 C 1.38236 * 120.00089 * 179.76947 * 24 23 22 26 26 C 1.38236 * 119.99906 * 0.47180 * 25 24 23 27 27 C 1.38227 * 119.99977 * 359.80198 * 26 25 24 28 28 C 1.38233 * 120.00040 * 89.99699 * 23 22 21 29 29 C 1.48564 * 104.22463 * 320.51290 * 21 20 19 30 30 H 1.08998 * 109.46838 * 345.32454 * 3 2 1 31 31 H 1.08997 * 109.46762 * 105.32151 * 3 2 1 32 32 H 1.08997 * 109.47150 * 297.47819 * 4 3 2 33 33 H 1.08996 * 109.47068 * 57.48259 * 4 3 2 34 34 H 1.08995 * 109.47253 * 209.99562 * 6 5 4 35 35 H 1.09001 * 109.46998 * 330.00222 * 6 5 4 36 36 H 0.96998 * 120.00085 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.32611 * 237.79334 * 19 17 15 38 38 H 1.09004 * 110.32486 * 359.90187 * 19 17 15 39 39 H 1.09003 * 110.40518 * 142.63406 * 20 19 17 40 40 H 1.08997 * 110.41081 * 265.07631 * 20 19 17 41 41 H 1.09004 * 109.46677 * 50.12725 * 22 21 20 42 42 H 1.09009 * 109.47014 * 170.12496 * 22 21 20 43 43 H 1.07999 * 119.99904 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99812 * 180.25226 * 25 24 23 45 45 H 1.08003 * 119.99573 * 179.77127 * 26 25 24 46 46 H 1.08004 * 120.00119 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00292 * 0.02562 * 28 23 22 48 48 H 1.08997 * 110.41383 * 280.70666 * 29 21 20 49 49 H 1.09001 * 110.40894 * 158.26100 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0152 1.0258 5 7 4.5813 0.9729 1.0688 6 6 5.3652 1.7629 0.1161 7 6 5.6388 3.1255 0.6987 8 1 5.2663 3.3777 1.6806 9 6 6.3646 4.0504 -0.0217 10 7 6.6037 5.2393 0.4870 11 14 7.0094 3.6140 -1.7196 12 1 5.9973 3.9803 -2.7428 13 1 8.2671 4.3599 -1.9782 14 1 7.2764 2.1547 -1.7878 15 6 5.2066 0.2072 1.9848 16 8 4.5606 -0.5120 2.7170 17 6 6.7088 0.2448 2.0992 18 1 7.1591 0.3945 1.1179 19 6 7.1447 1.3657 3.0652 20 6 7.8934 0.6434 4.2060 21 7 8.3613 -0.6293 3.5996 22 6 8.6462 -1.6322 4.6346 23 6 9.8757 -1.2243 5.4044 24 6 11.1242 -1.6461 4.9868 25 6 12.2526 -1.2680 5.6903 26 6 12.1316 -0.4762 6.8169 27 6 10.8827 -0.0592 7.2378 28 6 9.7548 -0.4330 6.5314 29 6 7.2308 -1.0604 2.7375 30 1 2.9717 -0.9933 0.2604 31 1 2.9712 0.2724 -0.9911 32 1 2.7911 2.0153 0.7407 33 1 2.7179 0.7691 2.0095 34 1 6.3097 1.2574 -0.0846 35 1 4.8061 1.8708 -0.8133 36 1 7.1146 5.8898 -0.0197 37 1 7.8102 2.0646 2.5586 38 1 6.2722 1.8899 3.4554 39 1 8.7422 1.2397 4.5409 40 1 7.2172 0.4426 5.0370 41 1 7.7979 -1.7025 5.3155 42 1 8.8164 -2.6010 4.1648 43 1 11.2183 -2.2682 4.1091 44 1 13.2283 -1.5941 5.3616 45 1 13.0129 -0.1839 7.3686 46 1 10.7882 0.5591 8.1183 47 1 8.7790 -0.1074 6.8604 48 1 6.4510 -1.5278 3.3387 49 1 7.5808 -1.7470 1.9667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581080955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:05 Heat of formation + Delta-G solvation = 25.015629 kcal Electronic energy + Delta-G solvation = -29406.142936 eV Core-core repulsion = 25526.148445 eV Total energy + Delta-G solvation = -3879.994491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13195 -39.32789 -37.76963 -36.67279 -35.36132 -33.39708 -32.74409 -31.43991 -30.95788 -29.99639 -28.70458 -27.90943 -25.74834 -24.16778 -22.76053 -22.66001 -21.57859 -21.03942 -20.56531 -18.20584 -17.58408 -17.15369 -16.85447 -16.61257 -16.00879 -15.69263 -15.21762 -15.16667 -14.94350 -14.68990 -14.14888 -14.02637 -13.76832 -13.48791 -13.44144 -13.16002 -13.05091 -12.79982 -12.64610 -12.49733 -12.28797 -12.16202 -12.09852 -11.90228 -11.75079 -11.42057 -11.17258 -11.05090 -10.97998 -10.90309 -10.86331 -10.73530 -10.69222 -10.40775 -10.17300 -9.67769 -9.20882 -8.96473 -8.85956 -8.76141 -8.31957 -8.01085 -6.26689 -4.28833 1.28117 1.35871 2.76447 2.87372 3.13113 3.13779 3.20215 3.24221 3.49396 3.69220 4.21152 4.21936 4.35726 4.67296 4.79477 4.89448 4.93966 5.01804 5.04051 5.07272 5.16073 5.22864 5.27386 5.34209 5.43905 5.52692 5.56031 5.58186 5.60861 5.66801 5.82928 5.92987 5.94676 5.98436 5.98935 6.12488 6.15569 6.21636 6.33474 6.36988 6.44290 6.44824 6.58081 6.62403 6.74734 6.93216 6.99297 7.10293 7.13149 7.35836 7.63443 7.93069 8.30333 8.69046 8.79786 9.31892 10.85554 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.003090 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.442246 B = 9060.189339 C =10964.261638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.220 3.780 3 C -0.045 4.045 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.205 3.795 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.079 3.921 10 N -0.888 5.888 11 Si 0.867 3.133 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.263 1.263 15 C 0.528 3.472 16 O -0.567 6.567 17 C -0.105 4.105 18 H 0.105 0.895 19 C -0.092 4.092 20 C 0.034 3.966 21 N -0.503 5.503 22 C 0.082 3.918 23 C -0.071 4.071 24 C -0.100 4.100 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.112 4.112 29 C 0.042 3.958 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.065 0.935 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 -12.340 6.448 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.098 4.098 3 C -0.086 4.086 4 C -0.001 4.001 5 N -0.317 5.317 6 C 0.084 3.916 7 C -0.578 4.578 8 H 0.098 0.902 9 C -0.125 4.125 10 N -0.525 5.525 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.316 3.684 16 O -0.447 6.447 17 C -0.127 4.127 18 H 0.123 0.877 19 C -0.130 4.130 20 C -0.094 4.094 21 N -0.227 5.227 22 C -0.046 4.046 23 C -0.072 4.072 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.131 4.131 29 C -0.086 4.086 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.083 0.917 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.109 -12.454 6.463 15.729 hybrid contribution 0.192 0.087 -0.593 0.629 sum 7.300 -12.367 5.870 15.514 Atomic orbital electron populations 1.81187 1.13061 1.09124 1.09149 1.29086 0.95111 0.92832 0.92807 1.19771 0.81420 1.03784 1.03658 1.21159 0.81401 0.98666 0.98907 1.47873 1.05310 1.44692 1.33871 1.19944 0.91305 0.92024 0.88349 1.21294 1.35560 0.95608 1.05307 0.90211 1.24839 0.95337 0.94688 0.97605 1.69874 1.39259 1.05302 1.38035 0.86991 0.79185 0.79295 0.85117 1.20023 1.20916 1.18761 1.20414 0.90194 0.78614 0.79138 1.90600 1.67859 1.41713 1.44554 1.21931 0.92055 0.96293 1.02379 0.87701 1.22061 1.00468 0.96211 0.94269 1.23210 0.98312 0.91353 0.96538 1.65456 1.36827 1.03086 1.17303 1.21194 0.94380 0.96016 0.93041 1.19746 0.94796 0.97591 0.95020 1.21021 0.91828 0.99856 0.99142 1.21131 0.98456 0.98695 0.95826 1.21119 0.97371 0.98596 0.97200 1.21108 0.92668 1.00189 0.99995 1.21094 0.98727 0.97853 0.95398 1.23083 0.92265 0.96306 0.96898 0.87299 0.87144 0.89161 0.89721 0.94285 0.95058 0.92328 0.89158 0.90852 0.90132 0.94102 0.93636 0.90008 0.86040 0.86281 0.86414 0.86264 0.86343 0.91711 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.22 18.54 42.15 0.78 -6.44 16 2 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 3 C -0.04 -0.53 6.03 -29.52 -0.18 -0.71 16 4 C 0.12 1.84 5.38 -4.04 -0.02 1.82 16 5 N -0.59 -10.01 2.46 -175.06 -0.43 -10.44 16 6 C 0.20 3.85 4.02 -5.19 -0.02 3.83 16 7 C -0.54 -12.58 9.47 -34.44 -0.33 -12.90 16 8 H 0.08 2.11 8.06 -52.48 -0.42 1.68 16 9 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.89 -24.17 13.96 55.43 0.77 -23.39 16 11 Si 0.87 18.36 27.47 -169.99 -4.67 13.69 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.26 -5.15 6.54 56.52 0.37 -4.78 16 15 C 0.53 9.18 6.61 -10.98 -0.07 9.10 16 16 O -0.57 -10.78 15.14 5.56 0.08 -10.70 16 17 C -0.10 -1.68 2.82 -90.39 -0.25 -1.94 16 18 H 0.10 1.70 6.02 -51.93 -0.31 1.39 16 19 C -0.09 -1.53 6.16 -25.35 -0.16 -1.69 16 20 C 0.03 0.49 5.48 -2.18 -0.01 0.47 16 21 N -0.50 -6.87 5.36 -231.41 -1.24 -8.11 16 22 C 0.08 0.95 4.97 -4.98 -0.02 0.93 16 23 C -0.07 -0.82 5.10 -104.63 -0.53 -1.35 16 24 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.11 -1.24 8.73 -39.58 -0.35 -1.59 16 29 C 0.04 0.60 5.97 -2.18 -0.01 0.58 16 30 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.08 1.32 7.35 -51.93 -0.38 0.94 16 34 H 0.04 0.73 5.00 -51.93 -0.26 0.47 16 35 H 0.03 0.56 7.50 -51.93 -0.39 0.17 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 39 H 0.08 1.16 7.81 -51.93 -0.41 0.75 16 40 H 0.04 0.58 7.82 -51.93 -0.41 0.17 16 41 H 0.05 0.53 7.82 -51.93 -0.41 0.13 16 42 H 0.08 0.85 8.07 -51.92 -0.42 0.43 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 48 H 0.06 0.98 6.67 -51.93 -0.35 0.63 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -28.78 404.26 -10.11 -38.89 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.54 Total: 5.60 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -3.95 Total: -5.20 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.12 Total: -48.38 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.67 Total: 13.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.78 -10.11 -38.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581080955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.905 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds