Wall clock time and date at job start Wed Apr 1 2020 00:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47218 * 271.55986 * 3 2 1 5 5 H 1.48506 * 109.47107 * 31.56183 * 3 2 1 6 6 H 1.48505 * 109.47040 * 151.55940 * 3 2 1 7 7 C 1.38807 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00217 * 338.57001 * 7 2 1 9 9 N 1.36939 * 120.00189 * 158.57333 * 7 2 1 10 10 C 1.46936 * 120.62553 * 332.11092 * 9 7 2 11 11 C 1.53192 * 108.77269 * 233.58570 * 10 9 7 12 12 C 1.53045 * 109.31478 * 305.36523 * 11 10 9 13 13 N 1.46895 * 109.46159 * 181.38691 * 12 11 10 14 14 C 1.46899 * 111.00281 * 154.99969 * 13 12 11 15 15 C 1.50694 * 109.47560 * 175.15393 * 14 13 12 16 16 C 1.35448 * 128.01319 * 256.33930 * 15 14 13 17 17 O 1.34037 * 106.44926 * 180.23093 * 16 15 14 18 18 N 1.20917 * 111.56886 * 359.75303 * 17 16 15 19 19 C 1.30177 * 111.60532 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.80735 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47176 * 275.57064 * 20 19 18 22 22 C 1.38236 * 120.00012 * 84.89381 * 21 20 19 23 23 C 1.38241 * 119.99759 * 180.27760 * 22 21 20 24 24 C 1.38238 * 119.99865 * 359.49095 * 23 22 21 25 25 C 1.38236 * 120.00181 * 0.50907 * 24 23 22 26 26 C 1.38232 * 119.99814 * 264.91514 * 21 20 19 27 27 C 1.53043 * 109.53686 * 61.36511 * 12 11 10 28 28 C 1.46923 * 120.63821 * 152.08719 * 9 7 2 29 29 H 0.97005 * 120.00030 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58620 * 113.80342 * 10 9 7 31 31 H 1.08997 * 109.70299 * 353.44258 * 10 9 7 32 32 H 1.08995 * 109.49628 * 185.41413 * 11 10 9 33 33 H 1.09002 * 109.52755 * 65.33432 * 11 10 9 34 34 H 1.09002 * 109.45572 * 301.35991 * 12 11 10 35 35 H 1.00902 * 111.00057 * 31.04302 * 13 12 11 36 36 H 1.09006 * 109.46919 * 55.15129 * 14 13 12 37 37 H 1.09003 * 109.46834 * 295.15737 * 14 13 12 38 38 H 1.08004 * 126.77260 * 359.96281 * 16 15 14 39 39 H 1.09001 * 109.47201 * 155.56583 * 20 19 18 40 40 H 1.09006 * 109.46468 * 35.56935 * 20 19 18 41 41 H 1.07995 * 119.99841 * 359.97438 * 22 21 20 42 42 H 1.07995 * 119.99483 * 179.72540 * 23 22 21 43 43 H 1.07998 * 119.99916 * 180.24164 * 24 23 22 44 44 H 1.07990 * 120.00182 * 179.72563 * 25 24 23 45 45 H 1.08002 * 119.99848 * 0.02562 * 26 21 20 46 46 H 1.09002 * 109.49614 * 58.58659 * 27 12 11 47 47 H 1.08996 * 109.49702 * 178.68426 * 27 12 11 48 48 H 1.08994 * 109.58847 * 246.20778 * 28 9 7 49 49 H 1.09010 * 109.57940 * 6.48359 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4647 2.0655 -1.3995 5 1 1.4645 2.6429 0.7329 6 1 3.5639 1.4309 0.6668 7 6 2.0102 -1.2021 0.0005 8 1 1.5262 -2.1050 0.3427 9 7 3.3086 -1.2434 -0.4327 10 6 3.7978 -0.2761 -1.4246 11 6 4.4309 -1.0426 -2.5901 12 6 5.5068 -1.9874 -2.0498 13 7 6.1390 -2.6999 -3.1680 14 6 7.4974 -3.1336 -2.8153 15 6 8.0681 -3.9608 -3.9382 16 6 8.2106 -5.3066 -3.9939 17 8 8.7675 -5.5805 -5.1819 18 7 8.9624 -4.5746 -5.8240 19 6 8.5756 -3.5119 -5.1792 20 6 8.6591 -2.0853 -5.6576 21 6 10.0295 -1.5345 -5.3585 22 6 11.0705 -1.7541 -6.2412 23 6 12.3290 -1.2537 -5.9639 24 6 12.5440 -0.5248 -4.8092 25 6 11.5030 -0.3052 -3.9265 26 6 10.2458 -0.8101 -4.2012 27 6 4.8672 -2.9996 -1.0966 28 6 4.2391 -2.2553 0.0858 29 1 -0.4850 0.8401 -0.0004 30 1 4.5441 0.3723 -0.9655 31 1 2.9667 0.3260 -1.7917 32 1 4.8831 -0.3368 -3.2868 33 1 3.6639 -1.6212 -3.1051 34 1 6.2607 -1.4105 -1.5140 35 1 6.1459 -2.1311 -4.0015 36 1 7.4629 -3.7317 -1.9047 37 1 8.1271 -2.2590 -2.6519 38 1 7.9343 -6.0182 -3.2298 39 1 7.9067 -1.4857 -5.1453 40 1 8.4805 -2.0515 -6.7324 41 1 10.9016 -2.3207 -7.1449 42 1 13.1432 -1.4291 -6.6514 43 1 13.5262 -0.1306 -4.5945 44 1 11.6720 0.2604 -3.0223 45 1 9.4326 -0.6392 -3.5113 46 1 4.0958 -3.5598 -1.6251 47 1 5.6299 -3.6867 -0.7303 48 1 5.0212 -1.7683 0.6682 49 1 3.6979 -2.9595 0.7178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590185526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:43 Heat of formation + Delta-G solvation = 108.292430 kcal Electronic energy + Delta-G solvation = -29328.865269 eV Core-core repulsion = 25452.481931 eV Total energy + Delta-G solvation = -3876.383338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.08662 -39.60887 -38.46962 -36.29037 -34.80889 -33.00465 -31.92721 -31.58802 -31.19464 -30.43436 -29.81897 -27.69192 -26.21455 -24.16611 -22.96664 -22.76533 -22.48646 -21.51368 -21.39776 -20.92648 -19.37023 -17.77283 -17.68518 -16.98776 -16.80497 -15.79322 -15.59055 -15.47881 -15.35135 -15.00443 -14.59777 -14.16359 -13.98241 -13.86935 -13.70461 -13.63555 -13.45113 -12.98355 -12.80725 -12.68163 -12.60513 -12.43240 -12.16408 -11.86392 -11.66922 -11.61034 -11.34900 -11.16633 -10.97311 -10.77815 -10.45087 -10.24730 -10.10651 -9.97871 -9.79413 -9.59814 -9.42223 -9.23467 -9.07459 -8.62448 -8.38796 -6.98242 -5.95890 -3.31095 0.97316 1.08930 1.36217 2.01655 3.09486 3.29850 3.43188 3.46745 3.49580 3.94757 4.26065 4.29260 4.47705 4.52065 4.54154 4.69950 4.74967 4.81599 4.83714 4.94776 5.08968 5.17001 5.18527 5.26740 5.29682 5.37601 5.38650 5.44134 5.51754 5.60118 5.65147 5.67027 5.74258 5.86128 5.88345 6.06419 6.13807 6.15532 6.19753 6.20296 6.27560 6.31918 6.37668 6.60540 6.63843 6.67461 6.74007 6.93718 7.15794 7.37820 7.96582 8.09736 8.32969 8.94058 9.71717 10.09868 11.20227 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.002613 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.242678 B =10711.482056 C =12014.685242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.130 3.870 11 C -0.134 4.134 12 C 0.096 3.904 13 N -0.681 5.681 14 C 0.134 3.866 15 C -0.185 4.185 16 C -0.046 4.046 17 O 0.096 5.904 18 N -0.363 5.363 19 C 0.031 3.969 20 C -0.002 4.002 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.109 4.109 27 C -0.118 4.118 28 C 0.147 3.853 29 H 0.262 0.738 30 H 0.021 0.979 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.337 0.663 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.216 0.784 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.019 0.981 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.505 -5.360 -10.340 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.328 5.328 10 C 0.003 3.997 11 C -0.174 4.174 12 C -0.013 4.013 13 N -0.313 5.313 14 C 0.005 3.995 15 C -0.189 4.189 16 C -0.128 4.128 17 O 0.031 5.969 18 N -0.067 5.067 19 C -0.129 4.129 20 C -0.040 4.040 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.158 4.158 28 C 0.021 3.979 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.155 0.845 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.037 0.963 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.594 -6.100 -11.347 27.763 hybrid contribution 0.558 2.103 0.714 2.290 sum 25.152 -3.997 -10.633 27.598 Atomic orbital electron populations 1.69851 1.05738 1.26537 1.52876 1.25293 0.95207 0.97535 0.99528 0.86974 0.80001 0.84830 0.77056 1.21604 1.23118 1.19738 1.18921 0.85425 0.94790 1.39572 0.89722 1.44356 1.08979 1.34733 1.44777 1.21286 0.97332 0.92049 0.89008 1.22224 0.98187 0.97955 0.99036 1.21478 0.94982 0.93806 0.91007 1.60592 1.17303 1.46548 1.06857 1.20144 0.88884 0.96595 0.93891 1.21181 1.05885 0.94119 0.97710 1.25783 0.99732 0.97136 0.90151 1.84806 1.59266 1.28997 1.23800 1.73801 1.19996 0.93513 1.19423 1.23188 1.00741 0.96129 0.92810 1.18917 0.94734 0.87765 1.02617 1.19640 0.94815 0.98374 0.95303 1.21069 0.92659 0.99342 0.99446 1.21149 0.96954 0.98243 0.97496 1.21183 0.99079 0.98968 0.94701 1.21167 0.92996 0.99961 0.99580 1.21095 0.97454 0.97767 0.96432 1.22010 0.99421 0.97312 0.97079 1.20952 0.92213 0.91435 0.93319 0.92778 0.96068 0.90721 0.93176 0.90729 0.94380 0.84483 0.89538 0.94067 0.76710 0.88903 0.88888 0.85998 0.86038 0.86096 0.85898 0.86020 0.91196 0.93116 0.96335 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 2 C 0.02 0.67 5.21 -17.43 -0.09 0.58 16 3 Si 0.88 22.13 24.38 -169.99 -4.14 17.99 16 4 H -0.29 -6.95 6.57 56.52 0.37 -6.58 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.73 6.81 56.52 0.38 -6.34 16 7 C -0.26 -7.16 10.02 -15.06 -0.15 -7.32 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.60 -14.08 2.76 -172.32 -0.48 -14.55 16 10 C 0.13 2.74 4.21 -3.71 -0.02 2.72 16 11 C -0.13 -2.25 5.36 -26.61 -0.14 -2.40 16 12 C 0.10 1.39 2.45 -67.67 -0.17 1.22 16 13 N -0.68 -8.24 6.27 -107.95 -0.68 -8.91 16 14 C 0.13 1.37 5.89 -4.98 -0.03 1.34 16 15 C -0.18 -1.89 5.88 -104.42 -0.61 -2.51 16 16 C -0.05 -0.42 12.26 29.74 0.36 -0.05 16 17 O 0.10 1.06 11.20 17.19 0.19 1.25 16 18 N -0.36 -4.40 12.07 33.42 0.40 -4.00 16 19 C 0.03 0.34 6.56 -82.09 -0.54 -0.20 16 20 C 0.00 -0.02 5.86 -29.03 -0.17 -0.19 16 21 C -0.08 -0.77 5.12 -104.63 -0.54 -1.31 16 22 C -0.11 -1.00 9.72 -39.58 -0.38 -1.39 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.11 -1.02 9.68 -39.58 -0.38 -1.40 16 27 C -0.12 -1.87 5.58 -26.61 -0.15 -2.01 16 28 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.02 0.45 7.18 -51.93 -0.37 0.07 16 31 H 0.07 1.75 4.59 -51.93 -0.24 1.51 16 32 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.04 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.34 3.86 7.61 -39.29 -0.30 3.56 16 36 H 0.09 0.85 7.32 -51.93 -0.38 0.47 16 37 H 0.04 0.40 7.58 -51.93 -0.39 0.01 16 38 H 0.22 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.09 0.78 7.22 -51.93 -0.38 0.40 16 40 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 1.03 7.50 -52.49 -0.39 0.63 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 1.24 7.93 -51.92 -0.41 0.82 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -32.05 391.04 -9.74 -41.79 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.48 Total: 1.81 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.22 Total: -14.36 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.03 Total: -54.38 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.19 Total: 1.25 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.05 -9.74 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590185526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.083 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds