Wall clock time and date at job start Wed Apr 1 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48502 * 109.46899 * 264.99927 * 3 2 1 5 5 H 1.48504 * 109.47322 * 24.99692 * 3 2 1 6 6 H 1.48498 * 109.47393 * 144.99679 * 3 2 1 7 7 C 1.37882 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99671 * 185.05881 * 7 2 1 9 9 C 1.50698 * 119.99885 * 5.06604 * 7 2 1 10 10 O 1.42895 * 110.87527 * 60.74520 * 9 7 2 11 11 C 1.55144 * 110.98846 * 296.90303 * 9 7 2 12 12 C 1.54322 * 103.01907 * 206.25866 * 11 9 7 13 13 N 1.47446 * 107.23109 * 22.28026 * 12 11 9 14 14 C 1.46899 * 110.99656 * 123.26400 * 13 12 11 15 15 C 1.50701 * 109.47411 * 69.87172 * 14 13 12 16 16 C 1.39866 * 125.89719 * 94.99815 * 15 14 13 17 17 C 1.35321 * 107.91834 * 179.97438 * 16 15 14 18 18 N 1.34944 * 107.74471 * 0.02562 * 17 16 15 19 19 C 1.46502 * 126.03719 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47102 * 124.99946 * 19 18 17 21 21 C 1.50697 * 109.46933 * 180.02562 * 20 19 18 22 22 C 1.38232 * 120.00228 * 269.72279 * 21 20 19 23 23 C 1.38233 * 120.00462 * 179.76455 * 22 21 20 24 24 C 1.38241 * 119.99507 * 0.52181 * 23 22 21 25 25 C 1.38240 * 120.00211 * 359.73508 * 24 23 22 26 26 C 1.38229 * 119.99561 * 0.02562 * 25 24 23 27 27 N 1.30838 * 125.89570 * 275.29755 * 15 14 13 28 28 C 1.47844 * 108.56804 * 0.99435 * 13 12 11 29 29 H 0.97007 * 119.99770 * 0.02562 * 1 2 3 30 30 H 0.96701 * 114.00637 * 290.76972 * 10 9 7 31 31 H 1.08999 * 110.70697 * 87.87030 * 11 9 7 32 32 H 1.09007 * 110.85476 * 324.70810 * 11 9 7 33 33 H 1.08999 * 109.88651 * 262.88017 * 12 11 9 34 34 H 1.08996 * 109.89085 * 141.69055 * 12 11 9 35 35 H 1.09008 * 109.46829 * 309.86746 * 14 13 12 36 36 H 1.08999 * 109.46873 * 189.87380 * 14 13 12 37 37 H 1.07997 * 126.03887 * 0.02562 * 16 15 14 38 38 H 1.08002 * 126.12417 * 179.97438 * 17 16 15 39 39 H 1.09005 * 109.46898 * 5.00738 * 19 18 17 40 40 H 1.08992 * 109.47237 * 245.00260 * 19 18 17 41 41 H 1.09000 * 109.47444 * 300.00521 * 20 19 18 42 42 H 1.08998 * 109.46831 * 59.99993 * 20 19 18 43 43 H 1.08003 * 120.00055 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.00788 * 180.23131 * 23 22 21 45 45 H 1.07998 * 119.99830 * 179.72466 * 24 23 22 46 46 H 1.07990 * 120.00099 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.99942 * 179.97438 * 26 25 24 48 48 H 1.08998 * 110.37415 * 94.73503 * 28 13 12 49 49 H 1.09006 * 110.36969 * 217.07325 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6023 1.9853 -1.3948 5 1 1.3978 2.6809 0.5916 6 1 3.4898 1.4730 0.8031 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1958 0.0830 9 6 1.2554 -2.4967 -0.1141 10 8 0.5275 -2.5590 -1.3422 11 6 0.3139 -2.7051 1.1012 12 6 0.1887 -4.2410 1.1846 13 7 1.3638 -4.8127 0.5017 14 6 2.1120 -5.7036 1.3986 15 6 1.3064 -6.9514 1.6540 16 6 1.4222 -8.1591 0.9581 17 6 0.5302 -9.0300 1.4844 18 7 -0.1269 -8.3958 2.4778 19 6 -1.1822 -8.9693 3.3167 20 6 -0.7999 -8.8197 4.7906 21 6 -1.8851 -9.4102 5.6535 22 6 -2.9302 -8.6171 6.0889 23 6 -3.9283 -9.1599 6.8764 24 6 -3.8755 -10.4933 7.2373 25 6 -2.8276 -11.2852 6.8063 26 6 -1.8322 -10.7435 6.0147 27 7 0.3742 -7.0903 2.5615 28 6 2.2166 -3.7035 0.0241 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2209 -1.9482 -1.3873 31 1 -0.6587 -2.2484 0.9181 32 1 0.7608 -2.3049 2.0114 33 1 -0.7245 -4.5661 0.6861 34 1 0.1764 -4.5559 2.2280 35 1 2.3008 -5.1932 2.3431 36 1 3.0610 -5.9724 0.9349 37 1 2.1036 -8.3610 0.1449 38 1 0.3721 -10.0498 1.1659 39 1 -1.3021 -10.0261 3.0779 40 1 -2.1198 -8.4459 3.1296 41 1 0.1378 -9.3431 4.9777 42 1 -0.6799 -7.7630 5.0294 43 1 -2.9692 -7.5744 5.8104 44 1 -4.7468 -8.5412 7.2135 45 1 -4.6530 -10.9163 7.8562 46 1 -2.7862 -12.3267 7.0886 47 1 -1.0133 -11.3620 5.6783 48 1 2.9979 -3.4851 0.7521 49 1 2.6558 -3.9515 -0.9423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:48 Heat of formation + Delta-G solvation = 39.740793 kcal Electronic energy + Delta-G solvation = -28580.125078 eV Core-core repulsion = 24700.769118 eV Total energy + Delta-G solvation = -3879.355960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09932 -40.22519 -39.99701 -36.77866 -35.75562 -34.18534 -33.25184 -31.79029 -31.52684 -30.92181 -29.87604 -29.14437 -27.38038 -25.88546 -24.38425 -23.48541 -22.27222 -21.94907 -21.63117 -21.40122 -20.35592 -18.96474 -17.99922 -17.55492 -17.03322 -16.85309 -16.59316 -16.37130 -16.11061 -15.90022 -15.59352 -15.33829 -14.83526 -14.53444 -14.38678 -14.27671 -14.16444 -13.92283 -13.86254 -13.72159 -13.60986 -13.22746 -13.03257 -12.91066 -12.78163 -12.69440 -12.52648 -12.35149 -12.22515 -12.17602 -11.96418 -11.83378 -11.73058 -11.34306 -11.10113 -10.61522 -10.25799 -10.04312 -9.84011 -9.69972 -9.38330 -9.16628 -8.19723 -6.34826 0.37752 0.48269 1.02340 1.41114 1.43035 1.51526 1.65208 1.87275 2.39419 2.84220 3.04120 3.29849 3.51414 3.79566 3.85879 3.93276 4.01006 4.05637 4.08403 4.15148 4.16992 4.20987 4.29313 4.32831 4.42264 4.45617 4.51640 4.59644 4.62438 4.75142 4.78865 4.87874 4.91750 4.97434 4.99930 5.08135 5.13531 5.15952 5.20870 5.26621 5.44953 5.53942 5.55775 5.62123 5.67276 5.73825 5.79733 5.96219 6.10098 6.23470 6.24403 6.26095 6.70472 6.85932 7.36027 7.42775 8.85655 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.002055 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.977914 B =13620.040025 C =14800.743953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.235 3.765 10 O -0.585 6.585 11 C -0.133 4.133 12 C 0.065 3.935 13 N -0.524 5.524 14 C 0.129 3.871 15 C 0.072 3.928 16 C -0.274 4.274 17 C 0.061 3.939 18 N -0.377 5.377 19 C 0.141 3.859 20 C -0.080 4.080 21 C -0.091 4.091 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.120 4.120 27 N -0.325 5.325 28 C 0.068 3.932 29 H 0.267 0.733 30 H 0.369 0.631 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.215 0.785 39 H 0.129 0.871 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.139 0.861 48 H 0.056 0.944 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -25.405 12.315 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.195 3.805 10 O -0.392 6.392 11 C -0.173 4.173 12 C -0.063 4.063 13 N -0.249 5.249 14 C -0.001 4.001 15 C -0.094 4.094 16 C -0.304 4.304 17 C -0.085 4.085 18 N -0.159 5.159 19 C 0.021 3.979 20 C -0.118 4.118 21 C -0.092 4.092 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.137 4.137 27 N -0.149 5.149 28 C -0.059 4.059 29 H 0.076 0.924 30 H 0.216 0.784 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.176 0.824 38 H 0.232 0.768 39 H 0.147 0.853 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.157 0.843 48 H 0.074 0.926 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.354 -25.583 12.801 29.103 hybrid contribution 0.407 1.970 0.154 2.018 sum -4.946 -23.613 12.955 27.383 Atomic orbital electron populations 1.69891 1.06940 1.27975 1.50192 1.25729 0.95827 1.02390 0.93323 0.85540 0.78636 0.78874 0.78342 1.20140 1.20782 1.19386 1.21795 0.93906 0.92143 1.51845 0.92401 1.19773 0.88076 0.91616 0.80993 1.86156 1.47724 1.65020 1.40277 1.23086 1.00914 0.93645 0.99613 1.22564 0.93537 0.93869 0.96329 1.63522 1.07387 1.17875 1.36082 1.20614 0.95369 0.88943 0.95132 1.22185 0.95936 0.96522 0.94754 1.21627 1.08001 0.93309 1.07447 1.23130 0.93923 1.00664 0.90755 1.48865 1.30778 1.08381 1.27894 1.21866 0.87401 1.00023 0.88595 1.20673 0.97223 1.01545 0.92328 1.19726 0.95866 0.94617 0.98991 1.21268 0.94853 1.00055 0.98762 1.21412 0.98888 0.96242 0.98109 1.21507 0.99132 0.93923 1.00075 1.21482 0.94120 1.01003 0.97529 1.21309 0.99738 0.94232 0.98462 1.77229 1.14908 0.97869 1.24907 1.22872 0.94666 0.89072 0.99323 0.92392 0.78364 0.92618 0.93877 0.93483 0.93040 0.94374 0.87458 0.82407 0.76796 0.85271 0.90549 0.90126 0.91913 0.86512 0.84859 0.84140 0.83782 0.84273 0.92616 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.45 10.85 21.45 0.23 -50.22 16 2 C 0.03 1.52 5.32 84.66 0.45 1.97 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.56 -30.85 8.26 25.60 0.21 -30.64 16 8 H 0.06 3.14 7.79 -2.91 -0.02 3.12 16 9 C 0.24 12.22 0.86 -10.15 -0.01 12.21 16 10 O -0.59 -32.10 13.14 -148.98 -1.96 -34.06 16 11 C -0.13 -6.63 5.33 31.78 0.17 -6.46 16 12 C 0.06 2.85 6.37 86.65 0.55 3.40 16 13 N -0.52 -21.55 5.15 -890.08 -4.58 -26.13 16 14 C 0.13 4.39 5.11 85.56 0.44 4.83 16 15 C 0.07 2.31 6.23 43.10 0.27 2.58 16 16 C -0.27 -7.09 10.74 21.99 0.24 -6.85 16 17 C 0.06 1.24 11.45 83.54 0.96 2.19 16 18 N -0.38 -9.01 3.68 -348.05 -1.28 -10.29 16 19 C 0.14 2.38 6.49 86.38 0.56 2.94 16 20 C -0.08 -1.39 5.54 29.85 0.17 -1.22 16 21 C -0.09 -1.46 5.13 -19.87 -0.10 -1.56 16 22 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 24 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 25 C -0.12 -1.41 10.05 22.27 0.22 -1.18 16 26 C -0.12 -1.52 9.70 22.27 0.22 -1.30 16 27 N -0.33 -10.55 11.74 -47.39 -0.56 -11.11 16 28 C 0.07 3.04 5.86 86.77 0.51 3.54 16 29 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 30 H 0.37 20.39 7.71 -74.06 -0.57 19.82 16 31 H 0.06 2.95 7.47 -2.39 -0.02 2.93 16 32 H 0.04 2.19 8.04 -2.38 -0.02 2.18 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 2.18 6.78 -2.39 -0.02 2.16 16 35 H 0.04 1.34 7.96 -2.38 -0.02 1.32 16 36 H 0.11 3.14 8.07 -2.39 -0.02 3.12 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.13 1.25 8.07 -2.38 -0.02 1.23 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 42 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 43 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.14 0.94 8.06 -2.92 -0.02 0.91 16 47 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 48 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 49 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -67.99 402.54 -0.24 -68.24 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.37 Total: 38.95 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.51 Total: -20.62 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -6.19 Total: -97.74 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.96 Total: -34.06 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.99 -0.24 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.978 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds