Wall clock time and date at job start Wed Apr 1 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39650 * 120.14826 * 116.44771 * 3 2 1 5 5 C 1.37929 * 119.84334 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.15425 * 0.02562 * 5 4 3 7 7 C 1.38341 * 120.29954 * 359.70623 * 6 5 4 8 8 C 1.50707 * 119.92289 * 180.27827 * 7 6 5 9 9 N 1.46905 * 109.46893 * 270.27533 * 8 7 6 10 10 C 1.46854 * 111.00054 * 45.78956 * 9 8 7 11 11 C 1.53029 * 109.52110 * 185.84131 * 10 9 8 12 12 C 1.53123 * 109.27798 * 300.81611 * 11 10 9 13 13 N 1.46504 * 109.57409 * 177.59180 * 12 11 10 14 14 C 1.34782 * 119.99529 * 85.28862 * 13 12 11 15 15 O 1.21281 * 120.00109 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99607 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47231 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47560 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99294 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00066 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47182 * 59.99624 * 22 20 18 24 24 H 1.48500 * 109.46980 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47098 * 299.99550 * 22 20 18 26 26 C 1.53116 * 109.15980 * 57.65912 * 12 11 10 27 27 C 1.46845 * 110.99921 * 169.99861 * 9 8 7 28 28 C 1.37965 * 120.15708 * 0.55481 * 7 6 5 29 29 H 1.07996 * 120.07902 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.92132 * 179.97438 * 5 4 3 31 31 H 1.07989 * 119.85002 * 180.02562 * 6 5 4 32 32 H 1.09006 * 109.46877 * 30.27144 * 8 7 6 33 33 H 1.08995 * 109.47320 * 150.27676 * 8 7 6 34 34 H 1.08999 * 109.45783 * 305.85316 * 10 9 8 35 35 H 1.08999 * 109.46182 * 65.81756 * 10 9 8 36 36 H 1.09003 * 109.50003 * 180.88213 * 11 10 9 37 37 H 1.08992 * 109.54028 * 60.77971 * 11 10 9 38 38 H 1.08998 * 109.52697 * 297.75373 * 12 11 10 39 39 H 0.96998 * 120.00094 * 265.28430 * 13 12 11 40 40 H 1.08996 * 109.47646 * 300.00399 * 16 14 13 41 41 H 1.09002 * 109.47132 * 60.00233 * 16 14 13 42 42 H 1.09003 * 109.46919 * 300.00552 * 17 16 14 43 43 H 1.09002 * 109.46774 * 60.00134 * 17 16 14 44 44 H 0.96998 * 120.00467 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.50816 * 182.40502 * 26 12 11 46 46 H 1.09001 * 109.53873 * 62.30651 * 26 12 11 47 47 H 1.09002 * 109.46309 * 294.17484 * 27 9 8 48 48 H 1.08996 * 109.46216 * 54.15140 * 27 9 8 49 49 H 1.08002 * 120.08297 * 179.75061 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5388 -1.0812 5 6 4.6484 0.5366 -1.0744 6 6 5.3374 0.0024 0.0003 7 6 4.6491 -0.5273 1.0770 8 6 5.4080 -1.1013 2.2457 9 7 5.6611 -2.5293 2.0114 10 6 6.1484 -2.7603 0.6454 11 6 6.2618 -4.2649 0.3906 12 6 7.2281 -4.8785 1.4077 13 7 7.2976 -6.3279 1.2062 14 6 8.1464 -6.8415 0.2939 15 8 8.8529 -6.1038 -0.3599 16 6 8.2182 -8.3325 0.0871 17 6 9.2513 -8.6479 -0.9965 18 6 9.3227 -10.1389 -1.2039 19 1 8.6944 -10.7958 -0.6207 20 6 10.1909 -10.6643 -2.1372 21 7 10.9563 -9.8643 -2.8470 22 14 10.2800 -12.5125 -2.3937 23 1 8.9493 -13.0183 -2.8166 24 1 11.2826 -12.8186 -3.4455 25 1 10.6784 -13.1699 -1.1231 26 6 6.7233 -4.5822 2.8225 27 6 6.5964 -3.0683 3.0070 28 6 3.2695 -0.5366 1.0810 29 1 2.7327 0.9557 -1.9207 30 1 5.1919 0.9521 -1.9101 31 1 6.4173 0.0036 0.0006 32 1 6.3575 -0.5772 2.3550 33 1 4.8197 -0.9811 3.1553 34 1 5.4501 -2.3227 -0.0680 35 1 7.1276 -2.2967 0.5259 36 1 6.6384 -4.4357 -0.6180 37 1 5.2806 -4.7275 0.4959 38 1 8.2193 -4.4445 1.2763 39 1 6.7328 -6.9179 1.7295 40 1 8.5105 -8.8151 1.0196 41 1 7.2416 -8.7037 -0.2236 42 1 8.9585 -8.1653 -1.9291 43 1 10.2280 -8.2766 -0.6864 44 1 11.5668 -10.2339 -3.5039 45 1 7.4295 -4.9796 3.5516 46 1 5.7492 -5.0494 2.9674 47 1 7.5736 -2.6033 2.8764 48 1 6.2235 -2.8545 4.0086 49 1 2.7333 -0.9541 1.9205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593348288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:10 Heat of formation + Delta-G solvation = 6.839905 kcal Electronic energy + Delta-G solvation = -28170.382556 eV Core-core repulsion = 24289.599907 eV Total energy + Delta-G solvation = -3880.782649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54109 -39.59074 -38.37531 -36.84774 -35.21882 -33.43021 -32.84122 -31.84236 -31.29276 -30.93765 -30.25085 -26.71158 -25.47891 -24.39932 -23.52048 -23.28773 -21.91887 -21.28633 -20.17059 -19.39806 -18.74638 -16.94275 -16.79650 -16.62980 -16.17425 -15.65561 -15.47299 -15.41879 -14.90737 -14.63540 -14.54552 -14.42388 -14.37323 -13.86622 -13.67185 -13.51829 -13.30017 -13.20915 -13.02367 -12.68623 -12.58303 -12.29258 -12.20215 -12.12391 -11.91532 -11.56992 -11.47761 -11.34771 -11.14146 -10.92978 -10.83523 -10.66954 -10.58174 -9.93734 -9.64888 -9.47556 -9.37279 -9.16449 -8.98577 -8.73197 -8.62401 -8.30880 -5.95224 -3.99568 0.28193 0.77660 2.25880 2.47661 3.27694 3.30380 3.34957 3.39425 3.40954 3.42443 3.54417 3.70778 4.13918 4.33781 4.48039 4.51044 4.54882 4.67177 4.72089 4.75389 4.90159 4.98098 5.04513 5.11834 5.19740 5.30228 5.35649 5.36222 5.39575 5.43232 5.46418 5.58891 5.70354 5.73502 5.77698 5.80757 5.87299 5.96652 6.07402 6.23012 6.25691 6.27033 6.28124 6.67732 6.74824 6.80874 6.91793 7.06907 7.75056 7.87603 7.93492 8.08257 8.40023 8.81654 9.09019 9.63831 11.15663 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.001803 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.950196 B =15526.672201 C =16126.768453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.255 3.745 3 C -0.031 4.031 4 C -0.069 4.069 5 C -0.119 4.119 6 C -0.082 4.082 7 C -0.084 4.084 8 C 0.092 3.908 9 N -0.533 5.533 10 C 0.053 3.947 11 C -0.127 4.127 12 C 0.144 3.856 13 N -0.740 5.740 14 C 0.511 3.489 15 O -0.536 6.536 16 C -0.131 4.131 17 C 0.038 3.962 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.123 4.123 27 C 0.061 3.939 28 C -0.050 4.050 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.397 0.603 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.363 23.430 12.299 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.060 4.060 3 C -0.035 4.035 4 C -0.090 4.090 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.084 4.084 8 C -0.035 4.035 9 N -0.258 5.258 10 C -0.075 4.075 11 C -0.166 4.166 12 C 0.039 3.961 13 N -0.393 5.393 14 C 0.299 3.701 15 O -0.411 6.411 16 C -0.171 4.171 17 C 0.000 4.000 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.161 4.161 27 C -0.068 4.068 28 C -0.071 4.071 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.882 23.700 11.729 30.344 hybrid contribution 0.990 -0.900 -0.086 1.340 sum -13.893 22.800 11.643 29.128 Atomic orbital electron populations 1.81273 1.12095 1.08460 1.07456 1.25719 0.92675 0.93771 0.93874 1.15989 0.84302 1.05538 0.97634 1.21215 0.94461 0.96754 0.96587 1.21103 0.93583 1.00042 0.98957 1.21417 1.00604 0.95360 0.92730 1.19668 0.93264 0.99104 0.96401 1.21095 0.98568 0.87921 0.95888 1.62128 1.46475 1.13810 1.03405 1.22223 0.98649 0.96803 0.89789 1.21986 1.00232 0.94190 1.00151 1.20881 0.99528 0.81823 0.93906 1.46261 1.43834 1.06845 1.42362 1.21550 0.78065 0.92431 0.78032 1.90656 1.42339 1.61963 1.46169 1.21866 1.03423 0.88671 1.03129 1.18885 0.92962 0.95818 0.92326 1.21196 1.22320 0.92099 1.20974 0.92671 1.25024 0.95608 0.97865 0.95889 1.69982 1.24317 1.34618 1.23946 0.86653 0.77758 0.85712 0.77802 1.20256 1.21299 1.20266 1.21853 1.02275 0.95566 0.96408 1.22031 0.94135 0.94854 0.95744 1.21046 0.93501 0.95621 0.96894 0.84973 0.84687 0.85268 0.93349 0.89392 0.89908 0.94566 0.90700 0.91011 0.90067 0.76970 0.90322 0.90296 0.95871 0.95883 0.92914 0.90754 0.90480 0.94378 0.90226 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.70 18.54 41.84 0.78 -3.92 16 2 C 0.26 2.22 15.33 -22.47 -0.34 1.88 16 3 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 4 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 5 C -0.12 -0.56 10.03 -39.64 -0.40 -0.96 16 6 C -0.08 -0.42 7.76 -39.49 -0.31 -0.73 16 7 C -0.08 -0.47 4.13 -104.68 -0.43 -0.91 16 8 C 0.09 0.50 5.42 -4.97 -0.03 0.48 16 9 N -0.53 -3.93 4.80 -236.11 -1.13 -5.07 16 10 C 0.05 0.47 4.57 -3.83 -0.02 0.45 16 11 C -0.13 -1.43 5.68 -26.65 -0.15 -1.58 16 12 C 0.14 1.68 2.52 -67.80 -0.17 1.51 16 13 N -0.74 -9.93 5.08 -53.68 -0.27 -10.21 16 14 C 0.51 9.58 7.80 -10.99 -0.09 9.50 16 15 O -0.54 -12.34 15.64 5.56 0.09 -12.26 16 16 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16 17 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 18 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 22 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.12 -1.02 5.57 -26.65 -0.15 -1.17 16 27 C 0.06 0.43 5.42 -3.83 -0.02 0.41 16 28 C -0.05 -0.30 9.41 -39.17 -0.37 -0.66 16 29 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 30 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 31 H 0.13 0.56 8.05 -52.49 -0.42 0.13 16 32 H 0.05 0.24 8.02 -51.93 -0.42 -0.18 16 33 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.08 0.71 5.63 -51.93 -0.29 0.42 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 39 H 0.40 4.20 8.61 -40.82 -0.35 3.85 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 49 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -35.27 407.45 -10.59 -45.86 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.75 Total: -1.57 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.15 Total: -8.94 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.11 Total: -45.88 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.27 -10.59 -45.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593348288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.704 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds